pycom01g02380

Coiled-coil domain-containing protein 94 homolog

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
1923173 .. 1925095
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02380.14

Sequence Viewer

Length: 1251 bp
ATGGAGATGTGTTGTAATTTGTTTAAAAGTTCTTGTTCTGATAATCCATCTATTTTGGGTGTTTCTTTCCTCAAATTGAATATCCGGAGGTGTTGGCCTTGGATACTAATTTTTGGTAAGAGTTGTTGGGTTGATTCTTTTGTTTGTGATTCGTTTGAGTTCAAGGTTTTGAAAAGCTTCTTCTACTTTTTTGATGGAATTTGTTTCACTTTCTCATCTGGACATTTTGATCAATTTTTTGACTTGTGGAGATTGTTTTCAAACCTGTCGTGCTGGATAAGGCTTTTGAGAAAAAGTCTATCTATTTTGGTTTCAATTTTGTCTAACTGTTTTCCTATGGTGTGTAGACTTTGGTTTGTGAAATTGTTCTATTCGATGACTGGCTTGACTCCTACATCTTCTTTTGGAAGTTTGAAAGGAGTGGCTGATACTTGTGTTTTTGTAATTGTAATTAAAATTGTTTCTTGTGGAGGACTCGTAATATTTTTCAACGAAATTCAAGAAAATACTTCAAATCTGTGCTTTTTCATGAAATTGTTATTTCGAAAAATATTCCCTCTGGGAATATTCTCTGTTGCTTTGATGTCAGCATTGAGTTTCTTCTGCCGAGCTTTGAATGGTTTGAATGACTTGCTTCAAAGTCGGATTCTGTTGGAGAGGTTTGTTATCCTTGAGGCTGTTTCTATTGACTTTAGTTTTATGTTAATCAGGCCATTGATTAATTCTTGTTGGGTGACTGCTGAGCTAGTTTCTACTGTAGATCCAGAAAAAGAATTCCTACTTGGTTCTAAAGATTTGTATGACTGGGCTAACTCGTGTAAGTGGACACTAGATTTTCTGGTTGGACGGTCAAAGTTGATTTTAGCTGTTCTGTCAAAATATTGTTCTATGTTGTCTAGCAAACACCAATCTAAAGGCAAATTGATATTTGACCACCTAATGGTTATGGGTATTTTGATGTTGGTTCATTTTTGTTCCTGTGACTTTATAGTCAACTCTGAAAATTATATTTTGATGTTTAATGTGAGTGCTTTTAATATACTTGACTCAATCATTCCAAGAATGCTATTACTAAAGTCAGTGAATCTTGCATCTCAGAGACATAACAAAATAGTGGTATTGAGGCCTCTTCTTGTTAAGGGCTTGATTATTATTTGGACTAGACCTATTTTCATGTTCTTTACTAAGAGTATAAGCTTTTTCAATTGTTTTGACATGGTGACCATTTCTTTTTGTAAATGTTTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

47.96

Weight (kDa)

8.9

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021174)

Species Orthologous Gene IDs
malus_domestica MD01G1096800.v1.1 MD01G1098100.v1.1
pyrus_communis pycom01g02380 pycom01g12210 pycom13g25000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 989
AccB7I CCANNNNNTGG 1 cut(s) 940
AccI GTMKAC 1 cut(s) 346
AccIII TCCGGA 1 cut(s) 84
AclWI GGATC 1 cut(s) 755
AcsI RAATTY 3 cut(s) 198, 495, 773
AfiI CCNNNNNNNGG 1 cut(s) 940
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 5 cut(s) 177, 611, 745, 866, 1197
AluI AGCT 5 cut(s) 177, 611, 745, 866, 1197
Alw26I GTCTC 1 cut(s) 1093
AlwI GGATC 1 cut(s) 755
Aor13HI TCCGGA 1 cut(s) 84
AoxI GGCC 3 cut(s) 95, 710, 1124
ApoI RAATTY 3 cut(s) 198, 495, 773
AseI ATTAAT 1 cut(s) 720
Asp700I GAANNNNTTC 2 cut(s) 176, 365
AsuHPI GGTGA 2 cut(s) 745, 1231
AsuII TTCGAA 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BauI CACGAG 1 cut(s) 814
BccI CCATC 2 cut(s) 55, 188
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 1093
BfaI CTAG 5 cut(s) 746, 830, 897, 1161, 1249
BfmI CTRYAG 1 cut(s) 756
BfuI GTATCC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 741
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 1 cut(s) 1100
BmuI ACTGGG 1 cut(s) 814
Bpu1102I GCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 692
BsaJI CCNNGG 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 940
Bse1I ACTGG 2 cut(s) 385, 809
BseAI TCCGGA 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 940
BseMII CTCAG 2 cut(s) 732, 1109
BseNI ACTGG 2 cut(s) 385, 809
BshFI GGCC 3 cut(s) 97, 712, 1126
BsiSI CCGG 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 940
BsmAI GTCTC 1 cut(s) 1093
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 3 cut(s) 97, 712, 1126
Bsp119I TTCGAA 1 cut(s) 544
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 2 cut(s) 229, 760
Bsp1720I GCTNAGC 1 cut(s) 741
BspANI GGCC 3 cut(s) 97, 712, 1126
BspCNI CTCAG 2 cut(s) 733, 1108
BspEI TCCGGA 1 cut(s) 84
BspHI TCATGA 1 cut(s) 528
BspPI GGATC 1 cut(s) 755
BspT104I TTCGAA 1 cut(s) 544
BsrI ACTGG 2 cut(s) 385, 809
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 229, 760
BssSI CACGAG 1 cut(s) 814
BssT1I CCWWGG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 814
Bst4CI ACNGT 3 cut(s) 329, 757, 849
Bst6I CTCTTC 1 cut(s) 1134
BstBI TTCGAA 1 cut(s) 544
BstDEI CTNAG 3 cut(s) 741, 1095, 1185
BstEII GGTNACC 1 cut(s) 1219
BstKTI GATC 2 cut(s) 232, 763
BstMAI GTCTC 1 cut(s) 1093
BstMBI GATC 2 cut(s) 229, 760
BstPI GGTNACC 1 cut(s) 1219
BstSFI CTRYAG 1 cut(s) 756
BstX2I RGATCY 1 cut(s) 760
BstYI RGATCY 1 cut(s) 760
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 3 cut(s) 97, 712, 1126
BtsIMutI CAGTG 1 cut(s) 1086
CciI TCATGA 1 cut(s) 528
CviAII CATG 3 cut(s) 529, 1174, 1216
DdeI CTNAG 3 cut(s) 741, 1095, 1185
DpnI GATC 2 cut(s) 231, 762
DpnII GATC 2 cut(s) 229, 760
DraI TTTAAA 1 cut(s) 25
DrdI GACNNNNNNGTC 1 cut(s) 989
DseDI GACNNNNNNGTC 1 cut(s) 989
Eam1104I CTCTTC 1 cut(s) 1134
EarI CTCTTC 1 cut(s) 1134
Eco130I CCWWGG 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 1126
Eco91I GGTNACC 1 cut(s) 1219
EcoO65I GGTNACC 1 cut(s) 1219
EcoRI GAATTC 1 cut(s) 773
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 532, 1177, 1219
FatI CATG 3 cut(s) 528, 1173, 1215
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 346
FspBI CTAG 5 cut(s) 746, 830, 897, 1161, 1249
HaeIII GGCC 3 cut(s) 97, 712, 1126
HapII CCGG 1 cut(s) 85
Hin1II CATG 3 cut(s) 532, 1177, 1219
HincII GTYRAC 1 cut(s) 994
HindII GTYRAC 1 cut(s) 994
HindIII AAGCTT 2 cut(s) 175, 1195
HinfI GANTC 7 cut(s) 134, 149, 388, 474, 646, 1046, 1084
HpaII CCGG 1 cut(s) 85
HphI GGTGA 2 cut(s) 745, 1231
Hpy166II GTNNAC 3 cut(s) 347, 825, 994
Hpy188I TCNGA 4 cut(s) 40, 645, 1000, 1098
Hpy188III TCNNGA 5 cut(s) 85, 219, 500, 529, 764
Hpy8I GTNNAC 3 cut(s) 347, 825, 994
HpyCH4III ACNGT 3 cut(s) 329, 757, 849
HpyCH4V TGCA 1 cut(s) 1091
HpyF3I CTNAG 3 cut(s) 741, 1095, 1185
Hsp92II CATG 3 cut(s) 532, 1177, 1219
Kpn2I TCCGGA 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 2 cut(s) 229, 760
LweI GCATC 1 cut(s) 1100
MaeI CTAG 5 cut(s) 746, 830, 897, 1161, 1249
MaeIII GTNAC 3 cut(s) 733, 980, 1219
MalI GATC 2 cut(s) 231, 762
MboI GATC 2 cut(s) 229, 760
MboII GAAGA 4 cut(s) 172, 390, 592, 1121
MfeI CAATTG 1 cut(s) 1204
MflI RGATCY 1 cut(s) 760
MlyI GAGTC 3 cut(s) 382, 468, 1040
MmeI TCCRAC 3 cut(s) 623, 633, 823
MnlI CCTC 8 cut(s) 80, 81, 464, 567, 651, 667, 1116, 1137
MroI TCCGGA 1 cut(s) 84
MroXI GAANNNNTTC 2 cut(s) 176, 365
MseI TTAA 7 cut(s) 24, 453, 704, 720, 1020, 1035, 1137
MspI CCGG 1 cut(s) 85
MunI CAATTG 1 cut(s) 1204
Mva1269I GAATGC 1 cut(s) 1068
NdeII GATC 2 cut(s) 229, 760
NlaIII CATG 3 cut(s) 532, 1177, 1219
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 3 cut(s) 733, 980, 1219
NspV TTCGAA 1 cut(s) 544
PagI TCATGA 1 cut(s) 528
PceI AGGCCT 1 cut(s) 1126
PctI GAATGC 1 cut(s) 1068
PdmI GAANNNNTTC 2 cut(s) 176, 365
PfeI GAWTC 4 cut(s) 134, 149, 646, 1084
PflMI CCANNNNNTGG 1 cut(s) 940
PleI GAGTC 3 cut(s) 382, 468, 1040
PpsI GAGTC 3 cut(s) 382, 468, 1040
PshBI ATTAAT 1 cut(s) 720
PspEI GGTNACC 1 cut(s) 1219
PsuI RGATCY 1 cut(s) 760
SaqAI TTAA 7 cut(s) 24, 453, 704, 720, 1020, 1035, 1137
Sau3AI GATC 2 cut(s) 229, 760
SchI GAGTC 3 cut(s) 382, 468, 1040
SfaNI GCATC 1 cut(s) 1100
SfcI CTRYAG 1 cut(s) 756
SfuI TTCGAA 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SseBI AGGCCT 1 cut(s) 1126
SspI AATATT 4 cut(s) 483, 552, 567, 881
SspMI CTAG 5 cut(s) 746, 830, 897, 1161, 1249
StuI AGGCCT 1 cut(s) 1126
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 329, 757, 849
TaqI TCGA 2 cut(s) 374, 544
TfiI GAWTC 4 cut(s) 134, 149, 646, 1084
Tru1I TTAA 7 cut(s) 24, 453, 704, 720, 1020, 1035, 1137
Tru9I TTAA 7 cut(s) 24, 453, 704, 720, 1020, 1035, 1137
TscAI CASTG 1 cut(s) 1086
TseFI GTSAC 3 cut(s) 733, 980, 1219
Tsp45I GTSAC 3 cut(s) 733, 980, 1219
TspDTI ATGAA 4 cut(s) 517, 545, 956, 1162
TspRI CASTG 1 cut(s) 1086
Van91I CCANNNNNTGG 1 cut(s) 940
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 3 cut(s) 198, 495, 773
XmiI GTMKAC 1 cut(s) 346
XmnI GAANNNNTTC 2 cut(s) 176, 365
XspI CTAG 5 cut(s) 746, 830, 897, 1161, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.