Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1165800.v1.1 |
| prunus_persica | Prupe.2G018500_v2.0.a1 |
| pyrus_communis | pycom11g13880 |
| rosa_multiflora | Rmu_co8187766.1_g000001 |
| rosa_samantha | Rh1CG375500 Rh1DG393000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 30 |
| AccB1I | GGYRCC | 1 cut(s) | 194 |
| AccI | GTMKAC | 1 cut(s) | 102 |
| AcyI | GRCGYC | 1 cut(s) | 27 |
| AjnI | CCWGG | 1 cut(s) | 87 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 200, 232 |
| AluBI | AGCT | 1 cut(s) | 202 |
| AluI | AGCT | 1 cut(s) | 202 |
| Alw26I | GTCTC | 2 cut(s) | 112, 230 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 212 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| BanI | GGYRCC | 1 cut(s) | 194 |
| BbsI | GAAGAC | 2 cut(s) | 6, 173 |
| BceAI | ACGGC | 2 cut(s) | 208, 255 |
| BciT130I | CCWGG | 1 cut(s) | 89 |
| BcoDI | GTCTC | 2 cut(s) | 112, 230 |
| BfaI | CTAG | 1 cut(s) | 65 |
| Bme1390I | CCNGG | 1 cut(s) | 89 |
| BmiI | GGNNCC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 1 cut(s) | 89 |
| BpiI | GAAGAC | 2 cut(s) | 6, 173 |
| BsaHI | GRCGYC | 1 cut(s) | 27 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 200, 230 |
| Bse1I | ACTGG | 2 cut(s) | 138, 174 |
| BseBI | CCWGG | 1 cut(s) | 89 |
| BseMII | CTCAG | 1 cut(s) | 58 |
| BseNI | ACTGG | 2 cut(s) | 138, 174 |
| BseRI | GAGGAG | 1 cut(s) | 107 |
| BshNI | GGYRCC | 1 cut(s) | 194 |
| BsmAI | GTCTC | 2 cut(s) | 112, 230 |
| BsmBI | CGTCTC | 2 cut(s) | 112, 230 |
| BspCNI | CTCAG | 1 cut(s) | 57 |
| BspHI | TCATGA | 1 cut(s) | 132 |
| BspLI | GGNNCC | 1 cut(s) | 196 |
| BspT107I | GGYRCC | 1 cut(s) | 194 |
| BsrI | ACTGG | 2 cut(s) | 138, 174 |
| BssNI | GRCGYC | 1 cut(s) | 27 |
| Bst2UI | CCWGG | 1 cut(s) | 89 |
| BstACI | GRCGYC | 1 cut(s) | 27 |
| BstDEI | CTNAG | 1 cut(s) | 44 |
| BstMAI | GTCTC | 2 cut(s) | 112, 230 |
| BstNI | CCWGG | 1 cut(s) | 89 |
| BstSCI | CCNGG | 1 cut(s) | 87 |
| BstV2I | GAAGAC | 2 cut(s) | 6, 173 |
| BtsIMutI | CAGTG | 2 cut(s) | 52, 181 |
| CciI | TCATGA | 1 cut(s) | 132 |
| CseI | GACGC | 1 cut(s) | 189 |
| CviAII | CATG | 1 cut(s) | 133 |
| CviJI | RGCY | 2 cut(s) | 189, 202 |
| CviKI_1 | RGCY | 2 cut(s) | 189, 202 |
| DdeI | CTNAG | 1 cut(s) | 44 |
| EcoRII | CCWGG | 1 cut(s) | 87 |
| Esp3I | CGTCTC | 2 cut(s) | 112, 230 |
| FaeI | CATG | 1 cut(s) | 136 |
| FaiI | YATR | 3 cut(s) | 134, 150, 248 |
| FatI | CATG | 1 cut(s) | 132 |
| FblI | GTMKAC | 1 cut(s) | 102 |
| FspBI | CTAG | 1 cut(s) | 65 |
| HgaI | GACGC | 1 cut(s) | 189 |
| Hin1I | GRCGYC | 1 cut(s) | 27 |
| Hin1II | CATG | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 200 |
| HinfI | GANTC | 1 cut(s) | 82 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 2 cut(s) | 103, 179 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 125 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 133, 235 |
| Hpy8I | GTNNAC | 2 cut(s) | 103, 179 |
| Hpy99I | CGWCG | 2 cut(s) | 32, 80 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 105 |
| HpyF3I | CTNAG | 1 cut(s) | 44 |
| HpySE526I | ACGT | 2 cut(s) | 27, 105 |
| Hsp92I | GRCGYC | 1 cut(s) | 27 |
| Hsp92II | CATG | 1 cut(s) | 136 |
| LpnPI | CCDG | 4 cut(s) | 74, 101, 151, 187 |
| MaeI | CTAG | 1 cut(s) | 65 |
| MaeII | ACGT | 2 cut(s) | 27, 105 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MboII | GAAGA | 4 cut(s) | 6, 175, 178, 205 |
| MnlI | CCTC | 5 cut(s) | 16, 53, 85, 90, 140 |
| MroXI | GAANNNNTTC | 1 cut(s) | 212 |
| MspR9I | CCNGG | 1 cut(s) | 89 |
| MvaI | CCWGG | 1 cut(s) | 89 |
| NlaIII | CATG | 1 cut(s) | 136 |
| NlaIV | GGNNCC | 1 cut(s) | 196 |
| PagI | TCATGA | 1 cut(s) | 132 |
| PdmI | GAANNNNTTC | 1 cut(s) | 212 |
| PfeI | GAWTC | 1 cut(s) | 82 |
| Psp6I | CCWGG | 1 cut(s) | 87 |
| PspGI | CCWGG | 1 cut(s) | 87 |
| PspN4I | GGNNCC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 1 cut(s) | 89 |
| SetI | ASST | 4 cut(s) | 30, 108, 132, 204 |
| SspMI | CTAG | 1 cut(s) | 65 |
| StyD4I | CCNGG | 1 cut(s) | 87 |
| TaiI | ACGT | 2 cut(s) | 30, 108 |
| TaqI | TCGA | 3 cut(s) | 30, 78, 234 |
| TfiI | GAWTC | 1 cut(s) | 82 |
| TscAI | CASTG | 2 cut(s) | 52, 181 |
| TspDTI | ATGAA | 2 cut(s) | 176, 217 |
| TspRI | CASTG | 2 cut(s) | 52, 181 |
| XmiI | GTMKAC | 1 cut(s) | 102 |
| XmnI | GAANNNNTTC | 1 cut(s) | 212 |
| XspI | CTAG | 1 cut(s) | 65 |
| ZraI | GACGTC | 1 cut(s) | 28 |