Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1165800.v1.1 |
| prunus_persica | Prupe.2G018500_v2.0.a1 |
| pyrus_communis | pycom11g13880 |
| rosa_multiflora | Rmu_co8187766.1_g000001 |
| rosa_samantha | Rh1CG375500 Rh1DG393000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 855, 1068 |
| AatII | GACGTC | 1 cut(s) | 327 |
| Acc36I | ACCTGC | 1 cut(s) | 559 |
| AccB1I | GGYRCC | 2 cut(s) | 491, 910 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 68 |
| AccI | GTMKAC | 1 cut(s) | 348 |
| AccII | CGCG | 1 cut(s) | 44 |
| AciI | CCGC | 1 cut(s) | 270 |
| AclWI | GGATC | 5 cut(s) | 250, 599, 914, 927, 1122 |
| AcoI | YGGCCR | 1 cut(s) | 70 |
| AcsI | RAATTY | 4 cut(s) | 1073, 1211, 1299, 1331 |
| AcuI | CTGAAG | 1 cut(s) | 1188 |
| AcyI | GRCGYC | 1 cut(s) | 324 |
| AfaI | GTAC | 6 cut(s) | 98, 146, 239, 563, 929, 1141 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 68, 993, 1375, 1659 |
| AflIII | ACRYGT | 1 cut(s) | 141 |
| AgeI | ACCGGT | 1 cut(s) | 470 |
| AgsI | TTSAA | 5 cut(s) | 604, 742, 1207, 1331, 1550 |
| AjnI | CCWGG | 3 cut(s) | 923, 1187, 1413 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1343, 1375 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 497, 529 |
| AluBI | AGCT | 6 cut(s) | 115, 222, 499, 837, 981, 1477 |
| AluI | AGCT | 6 cut(s) | 115, 222, 499, 837, 981, 1477 |
| Alw21I | GWGCWC | 6 cut(s) | 123, 664, 839, 1128, 1479, 1603 |
| Alw26I | GTCTC | 5 cut(s) | 282, 527, 858, 1010, 1166 |
| AlwI | GGATC | 5 cut(s) | 250, 599, 914, 927, 1122 |
| Ama87I | CYCGRG | 1 cut(s) | 116 |
| AoxI | GGCC | 4 cut(s) | 70, 649, 1107, 1518 |
| ApoI | RAATTY | 4 cut(s) | 1073, 1211, 1299, 1331 |
| AsiGI | ACCGGT | 1 cut(s) | 470 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1299, 1490 |
| AspLEI | GCGC | 2 cut(s) | 44, 888 |
| AspS9I | GGNCC | 2 cut(s) | 1519, 1644 |
| AsuC2I | CCSGG | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 4 cut(s) | 307, 374, 911, 1310 |
| AvaI | CYCGRG | 1 cut(s) | 116 |
| AvaII | GGWCC | 1 cut(s) | 1644 |
| BaeGI | GKGCMC | 1 cut(s) | 372 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 1 cut(s) | 919 |
| BanI | GGYRCC | 2 cut(s) | 491, 910 |
| BanII | GRGCYC | 2 cut(s) | 839, 1479 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 230, 262 |
| BbsI | GAAGAC | 2 cut(s) | 470, 1517 |
| Bbv12I | GWGCWC | 6 cut(s) | 123, 664, 839, 1128, 1479, 1603 |
| BccI | CCATC | 5 cut(s) | 62, 196, 224, 743, 1369 |
| BceAI | ACGGC | 2 cut(s) | 499, 636 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 67, 101 |
| BciT130I | CCWGG | 3 cut(s) | 925, 1189, 1415 |
| BclI | TGATCA | 1 cut(s) | 1132 |
| BcnI | CCSGG | 1 cut(s) | 231 |
| BcoDI | GTCTC | 5 cut(s) | 282, 527, 858, 1010, 1166 |
| BfmI | CTRYAG | 1 cut(s) | 1143 |
| BfoI | RGCGCY | 1 cut(s) | 889 |
| BfuAI | ACCTGC | 1 cut(s) | 559 |
| BglII | AGATCT | 1 cut(s) | 243 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| BmcAI | AGTACT | 1 cut(s) | 1141 |
| Bme1390I | CCNGG | 4 cut(s) | 231, 925, 1189, 1415 |
| Bme18I | GGWCC | 1 cut(s) | 1644 |
| BmeT110I | CYCGRG | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 2 cut(s) | 1519, 1644 |
| BmiI | GGNNCC | 4 cut(s) | 493, 912, 921, 1645 |
| BmrFI | CCNGG | 4 cut(s) | 231, 925, 1189, 1415 |
| BmsI | GCATC | 1 cut(s) | 616 |
| BpiI | GAAGAC | 2 cut(s) | 470, 1517 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1073, 1105 |
| BpmI | CTGGAG | 3 cut(s) | 11, 384, 1275 |
| BpuEI | CTTGAG | 6 cut(s) | 1044, 1077, 1100, 1325, 1391, 1493 |
| BpuMI | CCSGG | 1 cut(s) | 231 |
| BsaAI | YACGTR | 2 cut(s) | 144, 1604 |
| BsaHI | GRCGYC | 1 cut(s) | 324 |
| BsaI | GGTCTC | 1 cut(s) | 1166 |
| BsaJI | CCNNGG | 7 cut(s) | 73, 297, 372, 923, 1110, 1515, 1632 |
| BsaWI | WCCGGW | 1 cut(s) | 470 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 9, 39, 357, 383, 387, 413 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 68, 993, 1375, 1659 |
| Bse118I | RCCGGY | 1 cut(s) | 470 |
| Bse1I | ACTGG | 1 cut(s) | 1587 |
| Bse3DI | GCAATG | 3 cut(s) | 912, 1018, 1437 |
| BseBI | CCWGG | 3 cut(s) | 925, 1189, 1415 |
| BseDI | CCNNGG | 7 cut(s) | 73, 297, 372, 923, 1110, 1515, 1632 |
| BseGI | GGATG | 1 cut(s) | 721 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 68, 993, 1375, 1659 |
| BseMI | GCAATG | 3 cut(s) | 912, 1018, 1437 |
| BseMII | CTCAG | 2 cut(s) | 510, 1569 |
| BseNI | ACTGG | 1 cut(s) | 1587 |
| BseRI | GAGGAG | 3 cut(s) | 404, 1019, 1322 |
| BseSI | GKGCMC | 1 cut(s) | 372 |
| BseYI | CCCAGC | 2 cut(s) | 55, 1538 |
| Bsh1236I | CGCG | 1 cut(s) | 44 |
| Bsh1285I | CGRYCG | 3 cut(s) | 9, 87, 159 |
| BshFI | GGCC | 4 cut(s) | 72, 651, 1109, 1520 |
| BshNI | GGYRCC | 2 cut(s) | 491, 910 |
| BshTI | ACCGGT | 1 cut(s) | 470 |
| BsiEI | CGRYCG | 3 cut(s) | 9, 87, 159 |
| BsiHKAI | GWGCWC | 6 cut(s) | 123, 664, 839, 1128, 1479, 1603 |
| BsiHKCI | CYCGRG | 1 cut(s) | 116 |
| BsiSI | CCGG | 3 cut(s) | 231, 407, 471 |
| BslFI | GGGAC | 2 cut(s) | 838, 1657 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 68, 993, 1375, 1659 |
| BsmAI | GTCTC | 5 cut(s) | 282, 527, 858, 1010, 1166 |
| BsmFI | GGGAC | 2 cut(s) | 838, 1657 |
| BsnI | GGCC | 4 cut(s) | 72, 651, 1109, 1520 |
| Bso31I | GGTCTC | 1 cut(s) | 1166 |
| BsoBI | CYCGRG | 1 cut(s) | 116 |
| Bsp1286I | GDGCHC | 7 cut(s) | 123, 372, 664, 839, 1128, 1479, 1603 |
| Bsp1407I | TGTACA | 1 cut(s) | 237 |
| Bsp19I | CCATGG | 2 cut(s) | 297, 1632 |
| BspACI | CCGC | 1 cut(s) | 270 |
| BspANI | GGCC | 4 cut(s) | 72, 651, 1109, 1520 |
| BspCNI | CTCAG | 2 cut(s) | 511, 1570 |
| BspFNI | CGCG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 4 cut(s) | 493, 912, 921, 1645 |
| BspMI | ACCTGC | 1 cut(s) | 559 |
| BspPI | GGATC | 5 cut(s) | 250, 599, 914, 927, 1122 |
| BspQI | GCTCTTC | 1 cut(s) | 101 |
| BspT107I | GGYRCC | 2 cut(s) | 491, 910 |
| BspTNI | GGTCTC | 1 cut(s) | 1166 |
| BsrDI | GCAATG | 3 cut(s) | 912, 1018, 1437 |
| BsrFI | RCCGGY | 1 cut(s) | 470 |
| BsrGI | TGTACA | 1 cut(s) | 237 |
| BsrI | ACTGG | 1 cut(s) | 1587 |
| BssAI | RCCGGY | 1 cut(s) | 470 |
| BssECI | CCNNGG | 7 cut(s) | 73, 297, 372, 923, 1110, 1515, 1632 |
| BssNI | GRCGYC | 1 cut(s) | 324 |
| BssT1I | CCWWGG | 5 cut(s) | 73, 297, 1110, 1515, 1632 |
| Bst2UI | CCWGG | 3 cut(s) | 925, 1189, 1415 |
| Bst6I | CTCTTC | 4 cut(s) | 84, 101, 1164, 1563 |
| BstACI | GRCGYC | 1 cut(s) | 324 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 127 |
| BstAUI | TGTACA | 1 cut(s) | 237 |
| BstBAI | YACGTR | 2 cut(s) | 144, 1604 |
| BstC8I | GCNNGC | 3 cut(s) | 113, 890, 1444 |
| BstDEI | CTNAG | 3 cut(s) | 519, 1322, 1578 |
| BstDSI | CCRYGG | 3 cut(s) | 297, 372, 1632 |
| BstF5I | GGATG | 1 cut(s) | 721 |
| BstFNI | CGCG | 1 cut(s) | 44 |
| BstH2I | RGCGCY | 1 cut(s) | 889 |
| BstHHI | GCGC | 2 cut(s) | 44, 888 |
| BstMAI | GTCTC | 5 cut(s) | 282, 527, 858, 1010, 1166 |
| BstMCI | CGRYCG | 3 cut(s) | 9, 87, 159 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 127 |
| BstNI | CCWGG | 3 cut(s) | 925, 1189, 1415 |
| BstSCI | CCNGG | 4 cut(s) | 229, 923, 1187, 1413 |
| BstSFI | CTRYAG | 1 cut(s) | 1143 |
| BstSLI | GKGCMC | 1 cut(s) | 372 |
| BstUI | CGCG | 1 cut(s) | 44 |
| BstV2I | GAAGAC | 2 cut(s) | 470, 1517 |
| BstX2I | RGATCY | 5 cut(s) | 243, 255, 591, 919, 1114 |
| BstYI | RGATCY | 5 cut(s) | 243, 255, 591, 919, 1114 |
| BsuRI | GGCC | 4 cut(s) | 72, 651, 1109, 1520 |
| BtgI | CCRYGG | 3 cut(s) | 297, 372, 1632 |
| BtsCI | GGATG | 1 cut(s) | 721 |
| BtsIMutI | CAGTG | 3 cut(s) | 516, 1135, 1594 |
| BveI | ACCTGC | 1 cut(s) | 559 |
| Cac8I | GCNNGC | 3 cut(s) | 113, 890, 1444 |
| CfoI | GCGC | 2 cut(s) | 44, 888 |
| Cfr10I | RCCGGY | 1 cut(s) | 470 |
| Cfr13I | GGNCC | 2 cut(s) | 1519, 1644 |
| Csp6I | GTAC | 6 cut(s) | 97, 145, 238, 562, 928, 1140 |
| CspAI | ACCGGT | 1 cut(s) | 470 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 592, 627 |
| CviAII | CATG | 2 cut(s) | 298, 1633 |
| CviQI | GTAC | 6 cut(s) | 97, 145, 238, 562, 928, 1140 |
| DdeI | CTNAG | 3 cut(s) | 519, 1322, 1578 |
| DraI | TTTAAA | 1 cut(s) | 1216 |
| EaeI | YGGCCR | 1 cut(s) | 70 |
| Eam1104I | CTCTTC | 4 cut(s) | 84, 101, 1164, 1563 |
| EarI | CTCTTC | 4 cut(s) | 84, 101, 1164, 1563 |
| Ecl136II | GAGCTC | 2 cut(s) | 837, 1477 |
| Eco130I | CCWWGG | 5 cut(s) | 73, 297, 1110, 1515, 1632 |
| Eco24I | GRGCYC | 2 cut(s) | 839, 1479 |
| Eco31I | GGTCTC | 1 cut(s) | 1166 |
| Eco32I | GATATC | 1 cut(s) | 1150 |
| Eco47I | GGWCC | 1 cut(s) | 1644 |
| Eco53kI | GAGCTC | 2 cut(s) | 837, 1477 |
| Eco57I | CTGAAG | 1 cut(s) | 1188 |
| Eco88I | CYCGRG | 1 cut(s) | 116 |
| EcoICRI | GAGCTC | 2 cut(s) | 837, 1477 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1644 |
| EcoRI | GAATTC | 2 cut(s) | 1073, 1331 |
| EcoRII | CCWGG | 3 cut(s) | 923, 1187, 1413 |
| EcoRV | GATATC | 1 cut(s) | 1150 |
| EcoT14I | CCWWGG | 5 cut(s) | 73, 297, 1110, 1515, 1632 |
| EcoT38I | GRGCYC | 2 cut(s) | 839, 1479 |
| ErhI | CCWWGG | 5 cut(s) | 73, 297, 1110, 1515, 1632 |
| FaeI | CATG | 2 cut(s) | 301, 1636 |
| FaqI | GGGAC | 2 cut(s) | 838, 1657 |
| FatI | CATG | 2 cut(s) | 297, 1632 |
| FbaI | TGATCA | 1 cut(s) | 1132 |
| FblI | GTMKAC | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| FokI | GGATG | 1 cut(s) | 728 |
| FriOI | GRGCYC | 2 cut(s) | 839, 1479 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| GlaI | GCGC | 2 cut(s) | 43, 887 |
| GluI | GCNGC | 1 cut(s) | 270 |
| GsaI | CCCAGC | 2 cut(s) | 59, 1542 |
| GsuI | CTGGAG | 3 cut(s) | 11, 384, 1275 |
| HaeII | RGCGCY | 1 cut(s) | 889 |
| HaeIII | GGCC | 4 cut(s) | 72, 651, 1109, 1520 |
| HapII | CCGG | 3 cut(s) | 231, 407, 471 |
| HhaI | GCGC | 2 cut(s) | 44, 888 |
| Hin1I | GRCGYC | 1 cut(s) | 324 |
| Hin1II | CATG | 2 cut(s) | 301, 1636 |
| Hin6I | GCGC | 2 cut(s) | 42, 886 |
| HinP1I | GCGC | 2 cut(s) | 42, 886 |
| HincII | GTYRAC | 2 cut(s) | 208, 265 |
| HindII | GTYRAC | 2 cut(s) | 208, 265 |
| HindIII | AAGCTT | 1 cut(s) | 497 |
| HinfI | GANTC | 8 cut(s) | 290, 302, 379, 699, 968, 1057, 1082, 1580 |
| HpaI | GTTAAC | 1 cut(s) | 208 |
| HpaII | CCGG | 3 cut(s) | 231, 407, 471 |
| HphI | GGTGA | 4 cut(s) | 307, 374, 911, 1310 |
| Hpy166II | GTNNAC | 5 cut(s) | 208, 265, 349, 1056, 1159 |
| Hpy188I | TCNGA | 8 cut(s) | 134, 422, 581, 591, 625, 1036, 1579, 1668 |
| Hpy8I | GTNNAC | 5 cut(s) | 208, 265, 349, 1056, 1159 |
| Hpy99I | CGWCG | 3 cut(s) | 200, 329, 452 |
| HpyAV | CCTTC | 4 cut(s) | 388, 706, 809, 1446 |
| HpyCH4IV | ACGT | 4 cut(s) | 143, 225, 324, 1603 |
| HpyCH4V | TGCA | 3 cut(s) | 656, 875, 1249 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 127 |
| HpyF3I | CTNAG | 3 cut(s) | 519, 1322, 1578 |
| HpySE526I | ACGT | 4 cut(s) | 143, 225, 324, 1603 |
| Hsp92I | GRCGYC | 1 cut(s) | 324 |
| Hsp92II | CATG | 2 cut(s) | 301, 1636 |
| HspAI | GCGC | 2 cut(s) | 42, 886 |
| Ksp22I | TGATCA | 1 cut(s) | 1132 |
| KspAI | GTTAAC | 1 cut(s) | 208 |
| LguI | GCTCTTC | 1 cut(s) | 101 |
| LmnI | GCTCC | 4 cut(s) | 135, 834, 1482, 1598 |
| LweI | GCATC | 1 cut(s) | 616 |
| MaeII | ACGT | 4 cut(s) | 143, 225, 324, 1603 |
| MaeIII | GTNAC | 1 cut(s) | 313 |
| MfeI | CAATTG | 2 cut(s) | 1545, 1638 |
| MflI | RGATCY | 5 cut(s) | 243, 255, 591, 919, 1114 |
| MhlI | GDGCHC | 7 cut(s) | 123, 372, 664, 839, 1128, 1479, 1603 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 5 cut(s) | 284, 296, 1051, 1091, 1589 |
| MmeI | TCCRAC | 2 cut(s) | 157, 1504 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1299, 1490 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MseI | TTAA | 7 cut(s) | 207, 524, 633, 804, 894, 1215, 1385 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1631 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspI | CCGG | 3 cut(s) | 231, 407, 471 |
| MspR9I | CCNGG | 4 cut(s) | 231, 925, 1189, 1415 |
| MunI | CAATTG | 2 cut(s) | 1545, 1638 |
| MvaI | CCWGG | 3 cut(s) | 925, 1189, 1415 |
| MvnI | CGCG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 127 |
| NciI | CCSGG | 1 cut(s) | 231 |
| NcoI | CCATGG | 2 cut(s) | 297, 1632 |
| NlaIII | CATG | 2 cut(s) | 301, 1636 |
| NlaIV | GGNNCC | 4 cut(s) | 493, 912, 921, 1645 |
| NmeAIII | GCCGAG | 1 cut(s) | 658 |
| NmuCI | GTSAC | 1 cut(s) | 313 |
| PaeR7I | CTCGAG | 1 cut(s) | 116 |
| PciSI | GCTCTTC | 1 cut(s) | 101 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 156 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1299, 1490 |
| PfeI | GAWTC | 3 cut(s) | 379, 699, 968 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 68 |
| PfoI | TCCNGGA | 1 cut(s) | 229 |
| PinAI | ACCGGT | 1 cut(s) | 470 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| Ple19I | CGATCG | 3 cut(s) | 9, 87, 159 |
| PleI | GAGTC | 5 cut(s) | 284, 296, 1051, 1090, 1588 |
| PpsI | GAGTC | 5 cut(s) | 284, 296, 1051, 1090, 1588 |
| Ppu21I | YACGTR | 2 cut(s) | 144, 1604 |
| PpuMI | RGGWCCY | 1 cut(s) | 1644 |
| PsiI | TTATAA | 2 cut(s) | 855, 1068 |
| Psp124BI | GAGCTC | 2 cut(s) | 839, 1479 |
| Psp5II | RGGWCCY | 1 cut(s) | 1644 |
| Psp6I | CCWGG | 3 cut(s) | 923, 1187, 1413 |
| PspFI | CCCAGC | 2 cut(s) | 55, 1538 |
| PspGI | CCWGG | 3 cut(s) | 923, 1187, 1413 |
| PspN4I | GGNNCC | 4 cut(s) | 493, 912, 921, 1645 |
| PspPI | GGNCC | 2 cut(s) | 1519, 1644 |
| PspPPI | RGGWCCY | 1 cut(s) | 1644 |
| PspXI | VCTCGAGB | 1 cut(s) | 116 |
| PsuI | RGATCY | 5 cut(s) | 243, 255, 591, 919, 1114 |
| PvuI | CGATCG | 3 cut(s) | 9, 87, 159 |
| RsaI | GTAC | 6 cut(s) | 98, 146, 239, 563, 929, 1141 |
| RsaNI | GTAC | 6 cut(s) | 97, 145, 238, 562, 928, 1140 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1631 |
| SacI | GAGCTC | 2 cut(s) | 839, 1479 |
| SapI | GCTCTTC | 1 cut(s) | 101 |
| SaqAI | TTAA | 7 cut(s) | 207, 524, 633, 804, 894, 1215, 1385 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau96I | GGNCC | 2 cut(s) | 1519, 1644 |
| ScaI | AGTACT | 1 cut(s) | 1141 |
| SchI | GAGTC | 5 cut(s) | 284, 296, 1051, 1091, 1589 |
| ScrFI | CCNGG | 4 cut(s) | 231, 925, 1189, 1415 |
| SduI | GDGCHC | 7 cut(s) | 123, 372, 664, 839, 1128, 1479, 1603 |
| SfaNI | GCATC | 1 cut(s) | 616 |
| SfcI | CTRYAG | 1 cut(s) | 1143 |
| Sfr274I | CTCGAG | 1 cut(s) | 116 |
| SgrAI | CRCCGGYG | 1 cut(s) | 470 |
| SinI | GGWCC | 1 cut(s) | 1644 |
| SlaI | CTCGAG | 1 cut(s) | 116 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1631 |
| SmlI | CTYRAG | 7 cut(s) | 116, 1059, 1079, 1092, 1304, 1370, 1472 |
| SmoI | CTYRAG | 7 cut(s) | 116, 1059, 1079, 1092, 1304, 1370, 1472 |
| SsiI | CCGC | 1 cut(s) | 270 |
| SstI | GAGCTC | 2 cut(s) | 839, 1479 |
| StyD4I | CCNGG | 4 cut(s) | 229, 923, 1187, 1413 |
| StyI | CCWWGG | 5 cut(s) | 73, 297, 1110, 1515, 1632 |
| TaiI | ACGT | 4 cut(s) | 146, 228, 327, 1606 |
| TaqI | TCGA | 8 cut(s) | 9, 87, 117, 155, 159, 249, 327, 531 |
| TatI | WGTACW | 3 cut(s) | 237, 561, 1139 |
| TauI | GCSGC | 1 cut(s) | 272 |
| TfiI | GAWTC | 3 cut(s) | 379, 699, 968 |
| Tru1I | TTAA | 7 cut(s) | 207, 524, 633, 804, 894, 1215, 1385 |
| Tru9I | TTAA | 7 cut(s) | 207, 524, 633, 804, 894, 1215, 1385 |
| TscAI | CASTG | 3 cut(s) | 523, 1135, 1594 |
| TseFI | GTSAC | 1 cut(s) | 313 |
| Tsp45I | GTSAC | 1 cut(s) | 313 |
| TspDTI | ATGAA | 1 cut(s) | 759 |
| TspGWI | ACGGA | 5 cut(s) | 295, 470, 558, 1037, 1580 |
| TspRI | CASTG | 3 cut(s) | 523, 1135, 1594 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 68 |
| VpaK11BI | GGWCC | 1 cut(s) | 1644 |
| XapI | RAATTY | 4 cut(s) | 1073, 1211, 1299, 1331 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 921, 1050 |
| XhoI | CTCGAG | 1 cut(s) | 116 |
| XmiI | GTMKAC | 1 cut(s) | 348 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1299, 1490 |
| ZraI | GACGTC | 1 cut(s) | 325 |
| ZrmI | AGTACT | 1 cut(s) | 1141 |