Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0022386

Physical Location & Seq

Genomic Coordinates Forward (+)

30586986 .. 30588452

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1212400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAGGGAAGTGGGAGGTGTTTTCATGTTCTCCCCAACACAACAAGTGCTTCATTTGTGCTAAGGAAACACTACTCAACCCTTCTCTGCCTTTACGAGCAGGCTGATGCTGATGGCAACGGAACCGACCATGATGAGTTCATCGCAGCAACAATGCACTCGAACTGGATGGATAAACATCTCTACACTACCTTCCAACACTTCGATAAAAGGAGAGATGTGAGATTTTTGAAACCGTTTTCATTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

84

Amino Acids

9.65

Weight (kDa)

6.57

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022386)

Species	Orthologous Gene IDs
malus_domestica	MD01G1212400.v1.1 MD05G1032100.v1.1 MD05G1108200.v1.1
pyrus_communis	pycom04g02950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	107, 163
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	124
BmsI	GCATC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	177
BseGI	GGATG	1 cut(s)	174
BseJI	GATNNNNATC	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	102
CviAII	CATG	2 cut(s)	26, 131
CviJI	RGCY	1 cut(s)	104
CviKI_1	RGCY	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	62
FaeI	CATG	2 cut(s)	29, 134
FaiI	YATR	2 cut(s)	27, 132
FatI	CATG	2 cut(s)	25, 130
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	29, 134
HpyAV	CCTTC	2 cut(s)	92, 202
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	62
Hsp92II	CATG	2 cut(s)	29, 134
LpnPI	CCDG	2 cut(s)	86, 151
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	97
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	29, 134
NlaIV	GGNNCC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	124
SatI	GCNGC	1 cut(s)	147
SetI	ASST	2 cut(s)	20, 194
SfaNI	GCATC	1 cut(s)	97
SgeI	CNNG	7 cut(s)	38, 57, 109, 113, 143, 172, 178
TaaI	ACNGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	161, 204
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	4 cut(s)	14, 42, 130, 231
TspGWI	ACGGA	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.