Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0022386

Physical Location & Seq

Genomic Coordinates Forward (+)

5229349 .. 5232874

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1032100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 138 bp

ATGTTCTCCCCAACATCAACAAGCGCTTTGTTTGTGCTGAGGAAGCACTACTCAACCCTTCTCTACCATTATGAACAGGAAACGGTTCTCAACTTTTTAAACCTATGTATATCTAATGGGAAGACAAAAAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ARID HMG_box

Protein Analysis

46

Amino Acids

5.29

Weight (kDa)

9.3

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022386)

Species	Orthologous Gene IDs
malus_domestica	MD01G1212400.v1.1 MD05G1032100.v1.1 MD05G1108200.v1.1
pyrus_communis	pycom04g02950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	25
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	38
DraI	TTTAAA	1 cut(s)	99
Eco47III	AGCGCT	1 cut(s)	25
FaiI	YATR	3 cut(s)	72, 106, 110
GlaI	GCGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	27
HhaI	GCGC	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	24
LpnPI	CCDG	1 cut(s)	62
MboII	GAAGA	1 cut(s)	133
MnlI	CCTC	1 cut(s)	33
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	2 cut(s)	98, 136
MwoI	GCNNNNNNNGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	98, 136
SetI	ASST	1 cut(s)	105
SgeI	CNNG	2 cut(s)	33, 89
SspI	AATATT	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	98, 136
Tru9I	TTAA	2 cut(s)	98, 136
TspDTI	ATGAA	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.