Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0022381

Physical Location & Seq

Genomic Coordinates Forward (+)

1736722 .. 1737503

Gene Structure 782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1023400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTATGTTCCCATTGAAACACGAGGTGAGTTTGTTGGTTATGTGAATACCATAGTTTCGGTCAGGGGACGCAACCACAAGCCTGAGAGCATAGAGAATAATTGCTCAGACAAAGATGGAGATGCGATGGTGGCGGTAGACGGGAAGAGGGAAAGCTGCAGGAGGCGGTACTCATATTCCGTTTGGGCCGTTCCACCGCCTGATGTTTCCCATAGAATCAAGAAGGTGAAGGAGGGCCTCCGGGCAGAGTTCGGTGCGTTTCCCTGTAAACAGTTCTATGCCATATTTGAGCCTCCTCTACGGGAAGCCGACGGAAGAAGAAGAAGAGGAAAAAAGCTCGAGAAATGGTTAATGCTCTGGATGAGGGCATTACTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase FBA_1

Protein Analysis

127

Amino Acids

14.62

Weight (kDa)

9.75

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022381)

Species	Orthologous Gene IDs
malus_domestica	MD02G1023400.v1.1 MD02G1024300.v1.1 MD02G1024700.v1.1
pyrus_communis	pycom02g02070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	3 cut(s)	134, 166, 197
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	17
AluBI	AGCT	3 cut(s)	156, 337, 377
AluI	AGCT	3 cut(s)	156, 337, 377
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	186, 235
ApeKI	GCWGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	186, 235
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	38, 238
AvaI	CYCGRG	1 cut(s)	338
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	110, 121
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	186, 235
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	75, 120
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	188, 237
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	2 cut(s)	188, 237
BsoBI	CYCGRG	1 cut(s)	338
BspACI	CCGC	3 cut(s)	134, 166, 197
BspANI	GGCC	2 cut(s)	188, 237
BspCNI	CTCAG	2 cut(s)	76, 119
BspMAI	CTGCAG	1 cut(s)	161
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	140, 319
BstDEI	CTNAG	2 cut(s)	84, 106
BstF5I	GGATG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 374
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	188, 237
BtgZI	GCGATG	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	186, 235
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	169
CviJI	RGCY	8 cut(s)	82, 156, 188, 237, 292, 308, 337, 377
CviKI_1	RGCY	8 cut(s)	82, 156, 188, 237, 292, 308, 337, 377
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	2 cut(s)	84, 106
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	140, 319
EarI	CTCTTC	2 cut(s)	140, 319
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	235
FaiI	YATR	8 cut(s)	6, 42, 53, 92, 175, 213, 279, 284
FaqI	GGGAC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	157
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	188, 237
HapII	CCGG	1 cut(s)	241
HgaI	GACGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	2 cut(s)	38, 238
Hpy166II	GTNNAC	2 cut(s)	139, 269
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	220, 340, 358
Hpy8I	GTNNAC	2 cut(s)	139, 269
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	217, 223
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 374
HpyF3I	CTNAG	2 cut(s)	84, 106
LpnPI	CCDG	7 cut(s)	49, 96, 145, 213, 254, 277, 343
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	374
MboII	GAAGA	5 cut(s)	157, 327, 330, 333, 336
MluCI	AATT	1 cut(s)	100
MnlI	CCTC	9 cut(s)	17, 141, 156, 226, 248, 303, 306, 320, 357
MseI	TTAA	1 cut(s)	350
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	131, 374
NciI	CCSGG	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	186, 235
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	186, 235
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	5 cut(s)	28, 158, 228, 339, 379
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	100
SsiI	CCGC	3 cut(s)	134, 166, 197
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	339
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseI	GCWGC	1 cut(s)	156
TspGWI	ACGGA	2 cut(s)	169, 327
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.