MD02G1036500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015970
Physical Location & Seq
Forward (+)
2765854 .. 2766832
979 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1036500.v1.1.491

Sequence Viewer

Length: 318 bp
ATGTTTCCGAAGCAACTCCGCACCGTTGGCACAGCCGCCGCCGTACTCCTCGGCGGATTCCTCACCCTCAACCTGGCTTCCACCGCCACAATCGGAGCGCTCCGGTTCGCCGCCGAATCCAAACGGAGAAGGGTTGCGCTGCCCTGTGTGGTTTGCAGAGGGAAAGGGTTTTATATATGCAAGCTTTGCAAAGGGAATGCCACCATTGAATGGTCGCCGCTGCACGATCCGATTGCCATCAACCCCTGCCTTTGCCCAACCTGTGATGGAAATAGGGTGCAACGCTGTCTCAACTGTCTAGGGAAGGGATACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.3

Weight (kDa)

9.53

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75125
fragaria_vesca FvH4_1g03790 FvH4_1g03790
malus_domestica MD02G1036500.v1.1
prunus_persica Prupe.7G238900_v2.0.a1 Prupe.7G238900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089201
rosa_laevigata RLG00000016004
rosa_multiflora Rmu_sc0008322.1_g000025 Rmu_sc0011300.1_g000001
rosa_roxburghii Rroxscaffold_2G00152150
rosa_rugosa Rorug01G0488400
rosa_samantha Rh2BG042700 Rh2CG044200
rosa_wichuraiana Rw2G003910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 7 cut(s) 19, 36, 39, 54, 84, 111, 218
AclWI GGATC 1 cut(s) 221
AfaI GTAC 1 cut(s) 45
AfeI AGCGCT 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 73, 210
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 139, 220
AspLEI GCGC 2 cut(s) 100, 139
AsuHPI GGTGA 1 cut(s) 55
BbvI GCAGC 2 cut(s) 126, 207
BccI CCATC 2 cut(s) 245, 260
BceAI ACGGC 1 cut(s) 26
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 101
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 6 cut(s) 36, 39, 111, 140, 218, 221
BlsI GCNGC 6 cut(s) 37, 40, 112, 141, 219, 222
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 210
Bse8I GATNNNNATC 1 cut(s) 236
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 73, 210
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 126, 207
BsgI GTGCAG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 73, 210
BsmAI GTCTC 1 cut(s) 293
BsmI GAATGC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 7 cut(s) 19, 36, 39, 54, 84, 111, 218
BspPI GGATC 1 cut(s) 221
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 25, 296
BstAPI GCANNNNNTGC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 100, 139
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 27, 83, 186
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 126, 207
BsuI GTATCC 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 2 cut(s) 100, 139
Csp6I GTAC 1 cut(s) 44
CviJI RGCY 3 cut(s) 35, 77, 184
CviKI_1 RGCY 3 cut(s) 35, 77, 184
CviQI GTAC 1 cut(s) 44
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 69
Eco47III AGCGCT 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 72
FaiI YATR 3 cut(s) 174, 176, 178
Fnu4HI GCNGC 6 cut(s) 36, 39, 111, 140, 218, 221
Fsp4HI GCNGC 6 cut(s) 36, 39, 111, 140, 218, 221
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 99, 138
GluI GCNGC 6 cut(s) 36, 39, 111, 140, 218, 221
HaeII RGCGCY 1 cut(s) 101
HapII CCGG 1 cut(s) 103
HhaI GCGC 2 cut(s) 100, 139
Hin6I GCGC 2 cut(s) 98, 137
HinP1I GCGC 2 cut(s) 98, 137
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 57, 116
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 9, 95, 231
HpyAV CCTTC 2 cut(s) 123, 298
HpyCH4III ACNGT 2 cut(s) 25, 296
HpyCH4V TGCA 5 cut(s) 156, 180, 189, 223, 280
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 83, 186
HspAI GCGC 2 cut(s) 98, 137
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 95, 105
LpnPI CCDG 6 cut(s) 59, 86, 116, 157, 259, 274
Lsp1109I GCAGC 2 cut(s) 126, 207
MaeI CTAG 1 cut(s) 299
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MfeI CAATTG 1 cut(s) 313
MluCI AATT 1 cut(s) 313
MnlI CCTC 4 cut(s) 59, 71, 77, 152
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 27, 83, 186
NdeII GATC 1 cut(s) 226
NmeAIII GCCGAG 1 cut(s) 30
PctI GAATGC 1 cut(s) 202
PfeI GAWTC 2 cut(s) 57, 116
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 6 cut(s) 37, 40, 112, 141, 219, 222
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SatI GCNGC 6 cut(s) 36, 39, 111, 140, 218, 221
Sau3AI GATC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 74
SetI ASST 3 cut(s) 75, 186, 263
Sse9I AATT 1 cut(s) 313
SsiI CCGC 7 cut(s) 19, 36, 39, 54, 84, 111, 218
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 25, 296
TasI AATT 1 cut(s) 313
TauI GCSGC 4 cut(s) 38, 41, 113, 220
TfiI GAWTC 2 cut(s) 57, 116
TseI GCWGC 2 cut(s) 139, 220
TspGWI ACGGA 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 210
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.