Rorug01G0488400

PB1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013582
Physical Location & Seq
Reverse (-)
57377026 .. 57379096
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0488400.1

Sequence Viewer

Length: 495 bp
ATGGCGATCTGCTCGGCTCCTCTAACCACTTCATTCTCAGGCAGCGGATCTCAGCTGAAAGCGCGTGAGATTTGGTTGTCCGGCAAGTCGGAATCAGTAAAACTCACCGCACAGAGCCAGAGCCGGAGAAACTCGGTTCAATTGCGAAACAACCGTAATTTCTGTGTTCGTGCTGAGTATAGTGATGGTAATAGAGGTGGAGGTGCTGATTTTCTTGCTGGTTTCCTGGTCGGAGGTGCTGTGTTTGGAACTTTAGCTTATGTTTTTGCTCCACAGATCAGAAGATCTCTCCTCAATGAAGATGAATATGGATTTCGTAAGGCCAGGAGACCAATATATTATGACGAAGGTTTAGAGAAGACCAGGCAGACCTTGAATGCAAAAATAAGCCAGCTCAATTCAGCCATTGACAATGTCTCTTCCCGCTTGAGAGGTGGGAACAATGCGCCCGCGGCGCCAGTCCAAAGTGATCCCGAAGTAGAAGCTACCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
PB1 Pkinase_Tyr

Protein Analysis

164

Amino Acids

17.84

Weight (kDa)

9.63

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013582)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03810
malus_domestica MD02G1036600.v1.1 MD15G1176700.v1.1
prunus_persica Prupe.7G238800_v2.0.a1
pyrus_communis pycom02g03010 pycom15g15820
rosa_chinensis RchiOBHm_Chr2g0089211
rosa_laevigata RLG00000016005
rosa_multiflora Rmu_sc0008322.1_g000024 Rmu_sc0030891.1_g000001
rosa_roxburghii Rroxscaffold_2G00152140
rosa_rugosa Rorug01G0488400 Rorug01G0488500
rosa_samantha Rh2AG044100 Rh2BG042800 Rh2CG044300 Rh2DG043100
rosa_wichuraiana Rw2G003900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 454
AccII CGCG 2 cut(s) 64, 452
AciI CCGC 5 cut(s) 45, 108, 424, 450, 452
AclWI GGATC 2 cut(s) 55, 464
AcyI GRCGYC 1 cut(s) 455
AgsI TTSAA 2 cut(s) 140, 376
AjnI CCWGG 3 cut(s) 225, 323, 362
AluBI AGCT 4 cut(s) 55, 257, 394, 485
AluI AGCT 4 cut(s) 55, 257, 394, 485
Alw26I GTCTC 2 cut(s) 322, 421
AlwI GGATC 2 cut(s) 55, 464
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 3 cut(s) 64, 448, 457
AsuHPI GGTGA 1 cut(s) 97
BanI GGYRCC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 54
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 3 cut(s) 227, 325, 364
BcoDI GTCTC 2 cut(s) 322, 421
BfoI RGCGCY 1 cut(s) 458
BglII AGATCT 1 cut(s) 284
BisI GCNGC 2 cut(s) 43, 453
BlsI GCNGC 2 cut(s) 44, 454
Bme1390I CCNGG 3 cut(s) 227, 325, 364
BmiI GGNNCC 2 cut(s) 18, 456
BmrFI CCNGG 3 cut(s) 227, 325, 364
BpiI GAAGAC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 455
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 450
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bse1I ACTGG 1 cut(s) 458
BseBI CCWGG 3 cut(s) 227, 325, 364
BseDI CCNNGG 1 cut(s) 450
BseMII CTCAG 3 cut(s) 51, 65, 165
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 9, 281
BseXI GCAGC 1 cut(s) 54
Bsh1236I CGCG 2 cut(s) 64, 452
BshFI GGCC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 454
BsiSI CCGG 2 cut(s) 81, 124
BsmAI GTCTC 2 cut(s) 322, 421
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 322
Bsp143I GATC 5 cut(s) 6, 47, 276, 284, 469
BspACI CCGC 5 cut(s) 45, 108, 424, 450, 452
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 3 cut(s) 50, 64, 166
BspFNI CGCG 2 cut(s) 64, 452
BspLI GGNNCC 2 cut(s) 18, 456
BspPI GGATC 2 cut(s) 55, 464
BspT107I GGYRCC 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 5 cut(s) 6, 47, 276, 284, 469
BssNI GRCGYC 1 cut(s) 455
Bst2UI CCWGG 3 cut(s) 227, 325, 364
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 424
BstACI GRCGYC 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 392, 450
BstDEI CTNAG 3 cut(s) 37, 51, 174
BstDSI CCRYGG 1 cut(s) 450
BstFNI CGCG 2 cut(s) 64, 452
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 3 cut(s) 64, 448, 457
BstKTI GATC 5 cut(s) 9, 50, 279, 287, 472
BstMAI GTCTC 2 cut(s) 322, 421
BstMBI GATC 5 cut(s) 6, 47, 276, 284, 469
BstMWI GCNNNNNNNGC 3 cut(s) 61, 452, 454
BstNI CCWGG 3 cut(s) 227, 325, 364
BstSCI CCNGG 3 cut(s) 225, 323, 362
BstUI CGCG 2 cut(s) 64, 452
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 365
BstX2I RGATCY 2 cut(s) 47, 284
BstYI RGATCY 2 cut(s) 47, 284
BsuRI GGCC 1 cut(s) 323
BtgI CCRYGG 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 392, 450
CfoI GCGC 3 cut(s) 64, 448, 457
Cfr42I CCGCGG 1 cut(s) 453
CviAII CATG 1 cut(s) 490
DdeI CTNAG 3 cut(s) 37, 51, 174
DinI GGCGCC 1 cut(s) 456
DpnI GATC 5 cut(s) 8, 49, 278, 286, 471
DpnII GATC 5 cut(s) 6, 47, 276, 284, 469
Eam1104I CTCTTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 322
EcoRII CCWGG 3 cut(s) 225, 323, 362
EgeI GGCGCC 1 cut(s) 456
EheI GGCGCC 1 cut(s) 456
FaeI CATG 1 cut(s) 493
FaiI YATR 6 cut(s) 180, 261, 309, 337, 342, 491
FatI CATG 1 cut(s) 489
FauI CCCGC 2 cut(s) 431, 457
Fnu4HI GCNGC 2 cut(s) 43, 453
Fsp4HI GCNGC 2 cut(s) 43, 453
GlaI GCGC 3 cut(s) 63, 447, 456
GluI GCNGC 2 cut(s) 43, 453
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 81, 124
HhaI GCGC 3 cut(s) 64, 448, 457
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 1 cut(s) 493
Hin6I GCGC 3 cut(s) 62, 446, 455
HinP1I GCGC 3 cut(s) 62, 446, 455
HinfI GANTC 1 cut(s) 92
HpaII CCGG 2 cut(s) 81, 124
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 91, 233, 281
Hpy188III TCNNGA 1 cut(s) 473
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 452, 454
HpyF3I CTNAG 3 cut(s) 37, 51, 174
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 1 cut(s) 493
HspAI GCGC 3 cut(s) 62, 446, 455
KasI GGCGCC 1 cut(s) 454
KspI CCGCGG 1 cut(s) 453
Kzo9I GATC 5 cut(s) 6, 47, 276, 284, 469
LmnI GCTCC 2 cut(s) 22, 274
Lsp1109I GCAGC 1 cut(s) 54
MalI GATC 5 cut(s) 8, 49, 278, 286, 471
MboI GATC 5 cut(s) 6, 47, 276, 284, 469
MboII GAAGA 4 cut(s) 294, 311, 370, 411
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 2 cut(s) 47, 284
MluCI AATT 3 cut(s) 140, 157, 397
Mly113I GGCGCC 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 69, 211
MnlI CCTC 6 cut(s) 30, 188, 194, 227, 302, 425
MspA1I CMGCKG 3 cut(s) 45, 55, 452
MspI CCGG 2 cut(s) 81, 124
MspR9I CCNGG 3 cut(s) 227, 325, 364
MunI CAATTG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 3 cut(s) 227, 325, 364
MvnI CGCG 2 cut(s) 64, 452
MwoI GCNNNNNNNGC 3 cut(s) 61, 452, 454
NarI GGCGCC 1 cut(s) 455
NdeII GATC 5 cut(s) 6, 47, 276, 284, 469
NlaIII CATG 1 cut(s) 493
NlaIV GGNNCC 2 cut(s) 18, 456
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 92
PflFI GACNNNGTC 1 cut(s) 413
PkrI GCNGC 2 cut(s) 44, 454
PluTI GGCGCC 1 cut(s) 458
Psp6I CCWGG 3 cut(s) 225, 323, 362
PspGI CCWGG 3 cut(s) 225, 323, 362
PspN4I GGNNCC 2 cut(s) 18, 456
PsuI RGATCY 2 cut(s) 47, 284
PsyI GACNNNGTC 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 55
SacII CCGCGG 1 cut(s) 453
SatI GCNGC 2 cut(s) 43, 453
Sau3AI GATC 5 cut(s) 6, 47, 276, 284, 469
ScrFI CCNGG 3 cut(s) 227, 325, 364
SfoI GGCGCC 1 cut(s) 456
Sfr303I CCGCGG 1 cut(s) 453
SgrBI CCGCGG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 3 cut(s) 140, 157, 397
SsiI CCGC 5 cut(s) 45, 108, 424, 450, 452
SspDI GGCGCC 1 cut(s) 454
StyD4I CCNGG 3 cut(s) 225, 323, 362
TaaI ACNGT 1 cut(s) 155
TasI AATT 3 cut(s) 140, 157, 397
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 1 cut(s) 92
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 21, 312, 318
Tth111I GACNNNGTC 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.