PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g03810 |
| malus_domestica | MD02G1036600.v1.1 MD15G1176700.v1.1 |
| prunus_persica | Prupe.7G238800_v2.0.a1 |
| pyrus_communis | pycom02g03010 pycom15g15820 |
| rosa_chinensis | RchiOBHm_Chr2g0089211 |
| rosa_laevigata | RLG00000016005 |
| rosa_multiflora | Rmu_sc0008322.1_g000024 Rmu_sc0030891.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00152140 |
| rosa_rugosa | Rorug01G0488400 Rorug01G0488500 |
| rosa_samantha | Rh2AG044100 Rh2BG042800 Rh2CG044300 Rh2DG043100 |
| rosa_wichuraiana | Rw2G003900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2225 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| AatII | GACGTC | 1 cut(s) | 324 |
| AccB1I | GGYRCC | 2 cut(s) | 284, 2720 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 381, 1299, 2730 |
| AccI | GTMKAC | 2 cut(s) | 174, 306 |
| AciI | CCGC | 9 cut(s) | 122, 139, 150, 288, 293, 372, 482, 485, 2981 |
| AclI | AACGTT | 1 cut(s) | 2400 |
| AclWI | GGATC | 7 cut(s) | 170, 280, 2346, 2630, 2643, 2918, 2960 |
| AcoI | YGGCCR | 2 cut(s) | 119, 543 |
| AcsI | RAATTY | 5 cut(s) | 694, 757, 1357, 2014, 2443 |
| AcuI | CTGAAG | 1 cut(s) | 1746 |
| AcyI | GRCGYC | 2 cut(s) | 285, 321 |
| AfaI | GTAC | 4 cut(s) | 254, 1613, 2465, 2715 |
| AflIII | ACRYGT | 1 cut(s) | 1817 |
| AgeI | ACCGGT | 1 cut(s) | 856 |
| AgsI | TTSAA | 8 cut(s) | 100, 208, 529, 694, 742, 1525, 2605, 2752 |
| AjnI | CCWGG | 1 cut(s) | 1432 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1457, 1489, 2859, 2891 |
| AleI | CACNNNNGTG | 1 cut(s) | 1452 |
| Alw21I | GWGCWC | 1 cut(s) | 281 |
| Alw26I | GTCTC | 6 cut(s) | 149, 224, 350, 446, 838, 1667 |
| AlwI | GGATC | 7 cut(s) | 170, 280, 2346, 2630, 2643, 2918, 2960 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 381 |
| Ama87I | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| AoxI | GGCC | 7 cut(s) | 119, 543, 1241, 1429, 2097, 2736, 2978 |
| ApeKI | GCWGC | 8 cut(s) | 67, 93, 532, 1080, 1635, 2159, 2552, 3023 |
| ApoI | RAATTY | 5 cut(s) | 694, 757, 1357, 2014, 2443 |
| AsiGI | ACCGGT | 1 cut(s) | 856 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1226, 1620, 2115, 2571 |
| AspLEI | GCGC | 3 cut(s) | 107, 287, 2859 |
| AsuC2I | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882 |
| AsuNHI | GCTAGC | 1 cut(s) | 1892 |
| AvaI | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| AvaII | GGWCC | 8 cut(s) | 428, 459, 1380, 1871, 1964, 2056, 2065, 2432 |
| BaeGI | GKGCMC | 1 cut(s) | 2246 |
| BalI | TGGCCA | 1 cut(s) | 545 |
| BamHI | GGATCC | 1 cut(s) | 2635 |
| BanI | GGYRCC | 2 cut(s) | 284, 2720 |
| BanII | GRGCYC | 1 cut(s) | 281 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 125, 157 |
| BauI | CACGAG | 2 cut(s) | 30, 2576 |
| BbsI | GAAGAC | 2 cut(s) | 2108, 2888 |
| Bbv12I | GWGCWC | 1 cut(s) | 281 |
| BbvCI | CCTCAGC | 3 cut(s) | 512, 1875, 2640 |
| BbvI | GCAGC | 8 cut(s) | 79, 105, 544, 1092, 1647, 2146, 2564, 3010 |
| BceAI | ACGGC | 2 cut(s) | 118, 514 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2141, 2175, 2634, 2668 |
| BciT130I | CCWGG | 1 cut(s) | 1434 |
| BclI | TGATCA | 3 cut(s) | 769, 823, 1510 |
| BcnI | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882 |
| BcoDI | GTCTC | 6 cut(s) | 149, 224, 350, 446, 838, 1667 |
| BfmI | CTRYAG | 2 cut(s) | 91, 2192 |
| BfoI | RGCGCY | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 1933 |
| Bme1390I | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882, 1434 |
| Bme18I | GGWCC | 8 cut(s) | 428, 459, 1380, 1871, 1964, 2056, 2065, 2432 |
| BmeT110I | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| BmrFI | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882, 1434 |
| BmrI | ACTGGG | 1 cut(s) | 2841 |
| BmsI | GCATC | 3 cut(s) | 1318, 2003, 2539 |
| BmtI | GCTAGC | 1 cut(s) | 1896 |
| BmuI | ACTGGG | 1 cut(s) | 2841 |
| BpiI | GAAGAC | 2 cut(s) | 2108, 2888 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2623, 2655 |
| Bpu10I | CCTNAGC | 3 cut(s) | 512, 1875, 2640 |
| BpuEI | CTTGAG | 5 cut(s) | 65, 1405, 1914, 1953, 2237 |
| BpuMI | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882 |
| Bsa29I | ATCGAT | 1 cut(s) | 2341 |
| BsaHI | GRCGYC | 2 cut(s) | 285, 321 |
| BsaI | GGTCTC | 4 cut(s) | 149, 224, 350, 446 |
| BsaWI | WCCGGW | 3 cut(s) | 177, 201, 856 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 221, 251, 775, 805, 869, 899 |
| Bse118I | RCCGGY | 3 cut(s) | 215, 856, 1049 |
| Bse1I | ACTGG | 4 cut(s) | 969, 2435, 2648, 2836 |
| Bse3DI | GCAATG | 6 cut(s) | 231, 412, 709, 1254, 2550, 3021 |
| BseBI | CCWGG | 1 cut(s) | 1434 |
| BseCI | ATCGAT | 1 cut(s) | 2341 |
| BseMI | GCAATG | 6 cut(s) | 231, 412, 709, 1254, 2550, 3021 |
| BseNI | ACTGG | 4 cut(s) | 969, 2435, 2648, 2836 |
| BseRI | GAGGAG | 3 cut(s) | 2066, 2108, 2852 |
| BseSI | GKGCMC | 1 cut(s) | 2246 |
| BseX3I | CGGCCG | 1 cut(s) | 119 |
| BseXI | GCAGC | 8 cut(s) | 79, 105, 544, 1092, 1647, 2146, 2564, 3010 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsgI | GTGCAG | 2 cut(s) | 863, 2145 |
| Bsh1285I | CGRYCG | 3 cut(s) | 122, 178, 1702 |
| BshFI | GGCC | 7 cut(s) | 121, 545, 1243, 1431, 2099, 2738, 2980 |
| BshNI | GGYRCC | 2 cut(s) | 284, 2720 |
| BshTI | ACCGGT | 1 cut(s) | 856 |
| BshVI | ATCGAT | 1 cut(s) | 2341 |
| BsiEI | CGRYCG | 3 cut(s) | 122, 178, 1702 |
| BsiHKAI | GWGCWC | 1 cut(s) | 281 |
| BsiHKCI | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| BsiWI | CGTACG | 1 cut(s) | 2713 |
| BsmAI | GTCTC | 6 cut(s) | 149, 224, 350, 446, 838, 1667 |
| BsmI | GAATGC | 2 cut(s) | 107, 2408 |
| BsnI | GGCC | 7 cut(s) | 121, 545, 1243, 1431, 2099, 2738, 2980 |
| Bso31I | GGTCTC | 4 cut(s) | 149, 224, 350, 446 |
| BsoBI | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| Bsp1286I | GDGCHC | 2 cut(s) | 281, 2246 |
| Bsp19I | CCATGG | 2 cut(s) | 2263, 2729 |
| BspACI | CCGC | 9 cut(s) | 122, 139, 150, 288, 293, 372, 482, 485, 2981 |
| BspANI | GGCC | 7 cut(s) | 121, 545, 1243, 1431, 2099, 2738, 2980 |
| BspDI | ATCGAT | 1 cut(s) | 2341 |
| BspMAI | CTGCAG | 1 cut(s) | 95 |
| BspOI | GCTAGC | 1 cut(s) | 1896 |
| BspPI | GGATC | 7 cut(s) | 170, 280, 2346, 2630, 2643, 2918, 2960 |
| BspQI | GCTCTTC | 1 cut(s) | 2576 |
| BspT107I | GGYRCC | 2 cut(s) | 284, 2720 |
| BspTNI | GGTCTC | 4 cut(s) | 149, 224, 350, 446 |
| BsrDI | GCAATG | 6 cut(s) | 231, 412, 709, 1254, 2550, 3021 |
| BsrFI | RCCGGY | 3 cut(s) | 215, 856, 1049 |
| BsrI | ACTGG | 4 cut(s) | 969, 2435, 2648, 2836 |
| BssAI | RCCGGY | 3 cut(s) | 215, 856, 1049 |
| BssNI | GRCGYC | 2 cut(s) | 285, 321 |
| BssSI | CACGAG | 2 cut(s) | 30, 2576 |
| BssT1I | CCWWGG | 6 cut(s) | 959, 1231, 1464, 2104, 2263, 2729 |
| Bst2BI | CACGAG | 2 cut(s) | 30, 2576 |
| Bst2UI | CCWGG | 1 cut(s) | 1434 |
| Bst6I | CTCTTC | 3 cut(s) | 1888, 2522, 2576 |
| BstACI | GRCGYC | 2 cut(s) | 285, 321 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 538, 1641, 2549, 3020 |
| BstC8I | GCNNGC | 5 cut(s) | 543, 1646, 1894, 2349, 3012 |
| BstDSI | CCRYGG | 2 cut(s) | 2263, 2729 |
| BstH2I | RGCGCY | 1 cut(s) | 288 |
| BstHHI | GCGC | 3 cut(s) | 107, 287, 2859 |
| BstMAI | GTCTC | 6 cut(s) | 149, 224, 350, 446, 838, 1667 |
| BstMCI | CGRYCG | 3 cut(s) | 122, 178, 1702 |
| BstNI | CCWGG | 1 cut(s) | 1434 |
| BstNSI | RCATGY | 4 cut(s) | 1680, 1795, 1821, 2048 |
| BstSCI | CCNGG | 9 cut(s) | 116, 128, 158, 430, 455, 461, 462, 880, 1432 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 2192 |
| BstSLI | GKGCMC | 1 cut(s) | 2246 |
| BstV1I | GCAGC | 8 cut(s) | 79, 105, 544, 1092, 1647, 2146, 2564, 3010 |
| BstV2I | GAAGAC | 2 cut(s) | 2108, 2888 |
| BstX2I | RGATCY | 2 cut(s) | 1933, 2635 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1100, 1864, 2155 |
| BstYI | RGATCY | 2 cut(s) | 1933, 2635 |
| BstZI | CGGCCG | 1 cut(s) | 119 |
| Bsu15I | ATCGAT | 1 cut(s) | 2341 |
| BsuRI | GGCC | 7 cut(s) | 121, 545, 1243, 1431, 2099, 2738, 2980 |
| BsuTUI | ATCGAT | 1 cut(s) | 2341 |
| BtgI | CCRYGG | 2 cut(s) | 2263, 2729 |
| BtgZI | GCGATG | 1 cut(s) | 516 |
| BtsI | GCAGTG | 2 cut(s) | 846, 2044 |
| BtsIMutI | CAGTG | 7 cut(s) | 726, 846, 1830, 1850, 2044, 2442, 2655 |
| Cac8I | GCNNGC | 5 cut(s) | 543, 1646, 1894, 2349, 3012 |
| CaiI | CAGNNNCTG | 1 cut(s) | 381 |
| CfoI | GCGC | 3 cut(s) | 107, 287, 2859 |
| Cfr10I | RCCGGY | 3 cut(s) | 215, 856, 1049 |
| Cfr9I | CCCGGG | 1 cut(s) | 462 |
| ClaI | ATCGAT | 1 cut(s) | 2341 |
| CpoI | CGGWCCG | 1 cut(s) | 428 |
| CseI | GACGC | 2 cut(s) | 292, 336 |
| Csp6I | GTAC | 4 cut(s) | 253, 1612, 2464, 2714 |
| CspAI | ACCGGT | 1 cut(s) | 856 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2385, 2420 |
| CspI | CGGWCCG | 1 cut(s) | 428 |
| CviQI | GTAC | 4 cut(s) | 253, 1612, 2464, 2714 |
| DinI | GGCGCC | 1 cut(s) | 286 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| EaeI | YGGCCR | 2 cut(s) | 119, 543 |
| EagI | CGGCCG | 1 cut(s) | 119 |
| Eam1104I | CTCTTC | 3 cut(s) | 1888, 2522, 2576 |
| EarI | CTCTTC | 3 cut(s) | 1888, 2522, 2576 |
| EciI | GGCGGA | 1 cut(s) | 361 |
| Ecl136II | GAGCTC | 1 cut(s) | 279 |
| EclXI | CGGCCG | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 6 cut(s) | 959, 1231, 1464, 2104, 2263, 2729 |
| Eco24I | GRGCYC | 1 cut(s) | 281 |
| Eco31I | GGTCTC | 4 cut(s) | 149, 224, 350, 446 |
| Eco47I | GGWCC | 8 cut(s) | 428, 459, 1380, 1871, 1964, 2056, 2065, 2432 |
| Eco52I | CGGCCG | 1 cut(s) | 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 279 |
| Eco57I | CTGAAG | 1 cut(s) | 1746 |
| Eco88I | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| EcoICRI | GAGCTC | 1 cut(s) | 279 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1380, 1871, 1964, 2065 |
| EcoRI | GAATTC | 3 cut(s) | 694, 1357, 2014 |
| EcoRII | CCWGG | 1 cut(s) | 1432 |
| EcoT14I | CCWWGG | 6 cut(s) | 959, 1231, 1464, 2104, 2263, 2729 |
| EcoT22I | ATGCAT | 1 cut(s) | 1333 |
| EcoT38I | GRGCYC | 1 cut(s) | 281 |
| EgeI | GGCGCC | 1 cut(s) | 286 |
| EheI | GGCGCC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 6 cut(s) | 959, 1231, 1464, 2104, 2263, 2729 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2880, 2912 |
| FauI | CCCGC | 1 cut(s) | 300 |
| FauNDI | CATATG | 1 cut(s) | 2248 |
| FbaI | TGATCA | 3 cut(s) | 769, 823, 1510 |
| FblI | GTMKAC | 2 cut(s) | 174, 306 |
| FriOI | GRGCYC | 1 cut(s) | 281 |
| GlaI | GCGC | 3 cut(s) | 106, 286, 2858 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| HaeII | RGCGCY | 1 cut(s) | 288 |
| HaeIII | GGCC | 7 cut(s) | 121, 545, 1243, 1431, 2099, 2738, 2980 |
| HgaI | GACGC | 2 cut(s) | 292, 336 |
| HhaI | GCGC | 3 cut(s) | 107, 287, 2859 |
| Hin1I | GRCGYC | 2 cut(s) | 285, 321 |
| Hin6I | GCGC | 3 cut(s) | 105, 285, 2857 |
| HinP1I | GCGC | 3 cut(s) | 105, 285, 2857 |
| HincII | GTYRAC | 4 cut(s) | 175, 307, 2384, 2829 |
| HindII | GTYRAC | 4 cut(s) | 175, 307, 2384, 2829 |
| HindIII | AAGCTT | 2 cut(s) | 774, 2083 |
| HinfI | GANTC | 9 cut(s) | 308, 378, 423, 506, 1016, 1036, 1459, 1799, 2972 |
| Hpy166II | GTNNAC | 8 cut(s) | 175, 307, 940, 1497, 1696, 2260, 2384, 2829 |
| Hpy8I | GTNNAC | 8 cut(s) | 175, 307, 940, 1497, 1696, 2260, 2384, 2829 |
| Hpy99I | CGWCG | 7 cut(s) | 176, 188, 308, 317, 320, 323, 330 |
| HpyCH4IV | ACGT | 5 cut(s) | 183, 321, 625, 936, 2400 |
| HpySE526I | ACGT | 5 cut(s) | 183, 321, 625, 936, 2400 |
| Hsp92I | GRCGYC | 2 cut(s) | 285, 321 |
| HspAI | GCGC | 3 cut(s) | 105, 285, 2857 |
| KasI | GGCGCC | 1 cut(s) | 284 |
| Ksp22I | TGATCA | 3 cut(s) | 769, 823, 1510 |
| LguI | GCTCTTC | 1 cut(s) | 2576 |
| LmnI | GCTCC | 8 cut(s) | 141, 204, 264, 284, 877, 965, 2483, 2839 |
| Lsp1109I | GCAGC | 8 cut(s) | 79, 105, 544, 1092, 1647, 2146, 2564, 3010 |
| LweI | GCATC | 3 cut(s) | 1318, 2003, 2539 |
| MaeII | ACGT | 5 cut(s) | 183, 321, 625, 936, 2400 |
| MfeI | CAATTG | 1 cut(s) | 536 |
| MflI | RGATCY | 2 cut(s) | 1933, 2635 |
| MhlI | GDGCHC | 2 cut(s) | 281, 2246 |
| MlsI | TGGCCA | 1 cut(s) | 545 |
| MluNI | TGGCCA | 1 cut(s) | 545 |
| Mly113I | GGCGCC | 1 cut(s) | 285 |
| MlyI | GAGTC | 3 cut(s) | 302, 372, 432 |
| MmeI | TCCRAC | 7 cut(s) | 336, 349, 406, 1420, 2083, 2172, 2951 |
| Mox20I | TGGCCA | 1 cut(s) | 545 |
| Mph1103I | ATGCAT | 1 cut(s) | 1333 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1226, 1620, 2115, 2571 |
| MscI | TGGCCA | 1 cut(s) | 545 |
| MseI | TTAA | 6 cut(s) | 489, 903, 1073, 1419, 2081, 2483 |
| MslI | CAYNNNNRTG | 4 cut(s) | 501, 1008, 1452, 1454 |
| Msp20I | TGGCCA | 1 cut(s) | 545 |
| MspA1I | CMGCKG | 2 cut(s) | 1024, 1169 |
| MspR9I | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882, 1434 |
| MunI | CAATTG | 1 cut(s) | 536 |
| Mva1269I | GAATGC | 2 cut(s) | 107, 2408 |
| MvaI | CCWGG | 1 cut(s) | 1434 |
| NarI | GGCGCC | 1 cut(s) | 285 |
| NciI | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882 |
| NcoI | CCATGG | 2 cut(s) | 2263, 2729 |
| NdeI | CATATG | 1 cut(s) | 2248 |
| NheI | GCTAGC | 1 cut(s) | 1892 |
| NmeAIII | GCCGAG | 1 cut(s) | 815 |
| NmuCI | GTSAC | 5 cut(s) | 1903, 2422, 2437, 2455, 2776 |
| NsiI | ATGCAT | 1 cut(s) | 1333 |
| NspI | RCATGY | 4 cut(s) | 1680, 1795, 1821, 2048 |
| OliI | CACNNNNGTG | 1 cut(s) | 1452 |
| PaeR7I | CTCGAG | 2 cut(s) | 353, 2184 |
| PciI | ACATGT | 1 cut(s) | 1817 |
| PciSI | GCTCTTC | 1 cut(s) | 2576 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 180, 312, 351 |
| PctI | GAATGC | 2 cut(s) | 107, 2408 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1226, 1620, 2115, 2571 |
| PfeI | GAWTC | 6 cut(s) | 506, 1016, 1036, 1459, 1799, 2972 |
| Pfl23II | CGTACG | 1 cut(s) | 2713 |
| PflFI | GACNNNGTC | 2 cut(s) | 320, 432 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 381, 1299, 2730 |
| PfoI | TCCNGGA | 1 cut(s) | 128 |
| PinAI | ACCGGT | 1 cut(s) | 856 |
| Ple19I | CGATCG | 1 cut(s) | 1702 |
| PleI | GAGTC | 3 cut(s) | 302, 372, 431 |
| PluTI | GGCGCC | 1 cut(s) | 288 |
| PpsI | GAGTC | 3 cut(s) | 302, 372, 431 |
| PpuMI | RGGWCCY | 4 cut(s) | 1380, 1871, 1964, 2065 |
| PscI | ACATGT | 1 cut(s) | 1817 |
| PsiI | TTATAA | 1 cut(s) | 2225 |
| Psp124BI | GAGCTC | 1 cut(s) | 281 |
| Psp1406I | AACGTT | 1 cut(s) | 2400 |
| Psp5II | RGGWCCY | 4 cut(s) | 1380, 1871, 1964, 2065 |
| Psp6I | CCWGG | 1 cut(s) | 1432 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 1432 |
| PspLI | CGTACG | 1 cut(s) | 2713 |
| PspPPI | RGGWCCY | 4 cut(s) | 1380, 1871, 1964, 2065 |
| PstI | CTGCAG | 1 cut(s) | 95 |
| PstNI | CAGNNNCTG | 1 cut(s) | 381 |
| PsuI | RGATCY | 2 cut(s) | 1933, 2635 |
| PsyI | GACNNNGTC | 2 cut(s) | 320, 432 |
| PvuI | CGATCG | 1 cut(s) | 1702 |
| PvuII | CAGCTG | 2 cut(s) | 1024, 1169 |
| RsaI | GTAC | 4 cut(s) | 254, 1613, 2465, 2715 |
| RsaNI | GTAC | 4 cut(s) | 253, 1612, 2464, 2714 |
| RseI | CAYNNNNRTG | 4 cut(s) | 501, 1008, 1452, 1454 |
| Rsr2I | CGGWCCG | 1 cut(s) | 428 |
| RsrII | CGGWCCG | 1 cut(s) | 428 |
| SacI | GAGCTC | 1 cut(s) | 281 |
| SalI | GTCGAC | 2 cut(s) | 173, 305 |
| SapI | GCTCTTC | 1 cut(s) | 2576 |
| SaqAI | TTAA | 6 cut(s) | 489, 903, 1073, 1419, 2081, 2483 |
| SchI | GAGTC | 3 cut(s) | 302, 372, 432 |
| ScrFI | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 882, 1434 |
| SduI | GDGCHC | 2 cut(s) | 281, 2246 |
| SfaNI | GCATC | 3 cut(s) | 1318, 2003, 2539 |
| SfcI | CTRYAG | 2 cut(s) | 91, 2192 |
| SfoI | GGCGCC | 1 cut(s) | 286 |
| Sfr274I | CTCGAG | 2 cut(s) | 353, 2184 |
| SinI | GGWCC | 8 cut(s) | 428, 459, 1380, 1871, 1964, 2056, 2065, 2432 |
| SlaI | CTCGAG | 2 cut(s) | 353, 2184 |
| SmaI | CCCGGG | 1 cut(s) | 464 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 501, 1008, 1452, 1454 |
| SmlI | CTYRAG | 7 cut(s) | 80, 353, 1384, 1929, 1968, 2184, 2216 |
| SmoI | CTYRAG | 7 cut(s) | 80, 353, 1384, 1929, 1968, 2184, 2216 |
| SsiI | CCGC | 9 cut(s) | 122, 139, 150, 288, 293, 372, 482, 485, 2981 |
| SspDI | GGCGCC | 1 cut(s) | 284 |
| SspI | AATATT | 2 cut(s) | 1472, 1831 |
| SstI | GAGCTC | 1 cut(s) | 281 |
| StyD4I | CCNGG | 9 cut(s) | 116, 128, 158, 430, 455, 461, 462, 880, 1432 |
| StyI | CCWWGG | 6 cut(s) | 959, 1231, 1464, 2104, 2263, 2729 |
| TaiI | ACGT | 5 cut(s) | 186, 324, 628, 939, 2403 |
| TaqI | TCGA | 8 cut(s) | 174, 275, 306, 345, 354, 1214, 2185, 2341 |
| TatI | WGTACW | 1 cut(s) | 2463 |
| TauI | GCSGC | 5 cut(s) | 124, 153, 290, 485, 2983 |
| TfiI | GAWTC | 6 cut(s) | 506, 1016, 1036, 1459, 1799, 2972 |
| Tru1I | TTAA | 6 cut(s) | 489, 903, 1073, 1419, 2081, 2483 |
| Tru9I | TTAA | 6 cut(s) | 489, 903, 1073, 1419, 2081, 2483 |
| TscAI | CASTG | 7 cut(s) | 726, 846, 1830, 1857, 2044, 2442, 2655 |
| TseFI | GTSAC | 5 cut(s) | 1903, 2422, 2437, 2455, 2776 |
| TseI | GCWGC | 8 cut(s) | 67, 93, 532, 1080, 1635, 2159, 2552, 3023 |
| Tsp45I | GTSAC | 5 cut(s) | 1903, 2422, 2437, 2455, 2776 |
| TspGWI | ACGGA | 4 cut(s) | 160, 435, 1029, 2795 |
| TspMI | CCCGGG | 1 cut(s) | 462 |
| TspRI | CASTG | 7 cut(s) | 726, 846, 1830, 1857, 2044, 2442, 2655 |
| Tth111I | GACNNNGTC | 2 cut(s) | 320, 432 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 381, 1299, 2730 |
| VpaK11BI | GGWCC | 8 cut(s) | 428, 459, 1380, 1871, 1964, 2056, 2065, 2432 |
| XapI | RAATTY | 5 cut(s) | 694, 757, 1357, 2014, 2443 |
| XceI | RCATGY | 4 cut(s) | 1680, 1795, 1821, 2048 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2731 |
| XhoI | CTCGAG | 2 cut(s) | 353, 2184 |
| XmaI | CCCGGG | 1 cut(s) | 462 |
| XmiI | GTMKAC | 2 cut(s) | 174, 306 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1226, 1620, 2115, 2571 |
| ZraI | GACGTC | 1 cut(s) | 322 |
| Zsp2I | ATGCAT | 1 cut(s) | 1333 |