PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g03810 |
| malus_domestica | MD02G1036600.v1.1 MD15G1176700.v1.1 |
| prunus_persica | Prupe.7G238800_v2.0.a1 |
| pyrus_communis | pycom02g03010 pycom15g15820 |
| rosa_chinensis | RchiOBHm_Chr2g0089211 |
| rosa_laevigata | RLG00000016005 |
| rosa_multiflora | Rmu_sc0008322.1_g000024 Rmu_sc0030891.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00152140 |
| rosa_rugosa | Rorug01G0488400 Rorug01G0488500 |
| rosa_samantha | Rh2AG044100 Rh2BG042800 Rh2CG044300 Rh2DG043100 |
| rosa_wichuraiana | Rw2G003900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 3038 |
| AccB1I | GGYRCC | 2 cut(s) | 233, 3038 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 631, 3048 |
| AccI | GTMKAC | 2 cut(s) | 143, 303 |
| AccII | CGCG | 1 cut(s) | 506 |
| AciI | CCGC | 7 cut(s) | 414, 504, 636, 662, 1381, 2106, 2168 |
| AclI | AACGTT | 1 cut(s) | 1197 |
| AcoI | YGGCCR | 2 cut(s) | 2493, 3290 |
| AcuI | CTGAAG | 2 cut(s) | 2103, 2658 |
| AcyI | GRCGYC | 1 cut(s) | 234 |
| AfaI | GTAC | 7 cut(s) | 272, 476, 684, 1467, 2783, 3040, 3110 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 257, 401, 631, 968, 969, 1041, 1488, 1927, 3048 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 499 |
| AjnI | CCWGG | 3 cut(s) | 18, 58, 673 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1084, 1116 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1267, 1299 |
| Alw21I | GWGCWC | 2 cut(s) | 492, 1534 |
| Alw26I | GTCTC | 5 cut(s) | 445, 614, 871, 873, 945 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 680, 1070 |
| Ama87I | CYCGRG | 3 cut(s) | 485, 1481, 2499 |
| ApaI | GGGCCC | 1 cut(s) | 1802 |
| ApeKI | GCWGC | 7 cut(s) | 222, 1335, 1519, 2474, 2506, 2870, 3335 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 613, 645 |
| AseI | ATTAAT | 1 cut(s) | 363 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1893, 2889 |
| Asp718I | GGTACC | 1 cut(s) | 3038 |
| AspLEI | GCGC | 3 cut(s) | 236, 2964, 3171 |
| AspS9I | GGNCC | 8 cut(s) | 186, 851, 945, 1679, 1798, 1799, 1868, 2750 |
| AsuC2I | CCSGG | 5 cut(s) | 259, 396, 1482, 1483, 2625 |
| AsuHPI | GGTGA | 9 cut(s) | 293, 704, 1271, 1606, 2030, 2699, 2800, 2993, 3100 |
| AsuII | TTCGAA | 2 cut(s) | 1085, 1499 |
| AsuNHI | GCTAGC | 2 cut(s) | 733, 2195 |
| AvaI | CYCGRG | 3 cut(s) | 485, 1481, 2499 |
| AvaII | GGWCC | 3 cut(s) | 945, 1868, 2750 |
| AxyI | CCTNAGG | 2 cut(s) | 1713, 2275 |
| BaeGI | GKGCMC | 2 cut(s) | 1802, 1908 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 262, 295 |
| BalI | TGGCCA | 1 cut(s) | 2495 |
| BamHI | GGATCC | 1 cut(s) | 2380 |
| BanI | GGYRCC | 2 cut(s) | 233, 3038 |
| BanII | GRGCYC | 6 cut(s) | 492, 611, 643, 1488, 1534, 1802 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 254, 286, 2676, 2708 |
| BauI | CACGAG | 1 cut(s) | 2939 |
| BbsI | GAAGAC | 2 cut(s) | 1287, 2202 |
| Bbv12I | GWGCWC | 2 cut(s) | 492, 1534 |
| BbvCI | CCTCAGC | 2 cut(s) | 704, 2178 |
| BbvI | GCAGC | 7 cut(s) | 234, 1347, 1531, 2461, 2493, 2882, 3322 |
| BceAI | ACGGC | 2 cut(s) | 741, 2092 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 726, 760 |
| BciT130I | CCWGG | 3 cut(s) | 20, 60, 675 |
| BciVI | GTATCC | 2 cut(s) | 307, 1293 |
| BclI | TGATCA | 1 cut(s) | 1759 |
| BcnI | CCSGG | 5 cut(s) | 259, 396, 1482, 1483, 2625 |
| BcoDI | GTCTC | 5 cut(s) | 445, 614, 871, 873, 945 |
| BfaI | CTAG | 7 cut(s) | 246, 734, 1371, 2196, 2285, 2391, 2696 |
| BfmI | CTRYAG | 3 cut(s) | 840, 2244, 2507 |
| BfoI | RGCGCY | 2 cut(s) | 237, 2965 |
| BfuI | GTATCC | 2 cut(s) | 307, 1293 |
| BglII | AGATCT | 2 cut(s) | 1831, 2248 |
| BisI | GCNGC | 7 cut(s) | 223, 1336, 1520, 2475, 2507, 2871, 3336 |
| BlsI | GCNGC | 7 cut(s) | 224, 1337, 1521, 2476, 2508, 2872, 3337 |
| Bme1390I | CCNGG | 8 cut(s) | 20, 60, 259, 396, 675, 1482, 1483, 2625 |
| Bme18I | GGWCC | 3 cut(s) | 945, 1868, 2750 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 499 |
| BmeT110I | CYCGRG | 3 cut(s) | 485, 1481, 2499 |
| BmgT120I | GGNCC | 8 cut(s) | 186, 851, 945, 1679, 1798, 1799, 1868, 2750 |
| BmrFI | CCNGG | 8 cut(s) | 20, 60, 259, 396, 675, 1482, 1483, 2625 |
| BmrI | ACTGGG | 5 cut(s) | 919, 1277, 1974, 2960, 3153 |
| BmsI | GCATC | 4 cut(s) | 1347, 1771, 2318, 2857 |
| BmtI | GCTAGC | 2 cut(s) | 737, 2199 |
| BmuI | ACTGGG | 5 cut(s) | 919, 1277, 1974, 2960, 3153 |
| BpiI | GAAGAC | 2 cut(s) | 1287, 2202 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2941, 2973 |
| BpmI | CTGGAG | 3 cut(s) | 1182, 2446, 3042 |
| Bpu10I | CCTNAGC | 3 cut(s) | 704, 1487, 2178 |
| Bpu14I | TTCGAA | 2 cut(s) | 1085, 1499 |
| BpuEI | CTTGAG | 2 cut(s) | 194, 2552 |
| BpuMI | CCSGG | 5 cut(s) | 259, 396, 1482, 1483, 2625 |
| Bsa29I | ATCGAT | 1 cut(s) | 2659 |
| BsaAI | YACGTR | 1 cut(s) | 3323 |
| BsaHI | GRCGYC | 1 cut(s) | 234 |
| BsaI | GGTCTC | 1 cut(s) | 614 |
| BsaJI | CCNNGG | 8 cut(s) | 58, 673, 674, 757, 1205, 1480, 1481, 3047 |
| BsaWI | WCCGGW | 2 cut(s) | 267, 3023 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1299, 1329, 1543, 1573, 2031, 2061 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 257, 401, 631, 968, 969, 1041, 1488, 1927, 3048 |
| Bse118I | RCCGGY | 1 cut(s) | 3188 |
| Bse21I | CCTNAGG | 2 cut(s) | 1713, 2275 |
| Bse3DI | GCAATG | 3 cut(s) | 538, 1503, 2868 |
| BseBI | CCWGG | 3 cut(s) | 20, 60, 675 |
| BseCI | ATCGAT | 1 cut(s) | 2659 |
| BseDI | CCNNGG | 8 cut(s) | 58, 673, 674, 757, 1205, 1480, 1481, 3047 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 257, 401, 631, 968, 969, 1041, 1488, 1927, 3048 |
| BseMI | GCAATG | 3 cut(s) | 538, 1503, 2868 |
| BseRI | GAGGAG | 3 cut(s) | 1825, 2166, 2381 |
| BseSI | GKGCMC | 2 cut(s) | 1802, 1908 |
| BseXI | GCAGC | 7 cut(s) | 234, 1347, 1531, 2461, 2493, 2882, 3322 |
| BsgI | GTGCAG | 3 cut(s) | 241, 947, 1668 |
| Bsh1236I | CGCG | 1 cut(s) | 506 |
| Bsh1285I | CGRYCG | 1 cut(s) | 307 |
| BshNI | GGYRCC | 2 cut(s) | 233, 3038 |
| BshVI | ATCGAT | 1 cut(s) | 2659 |
| BsiEI | CGRYCG | 1 cut(s) | 307 |
| BsiHKAI | GWGCWC | 2 cut(s) | 492, 1534 |
| BsiHKCI | CYCGRG | 3 cut(s) | 485, 1481, 2499 |
| BslFI | GGGAC | 2 cut(s) | 1052, 2966 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 257, 401, 631, 968, 969, 1041, 1488, 1927, 3048 |
| BsmAI | GTCTC | 5 cut(s) | 445, 614, 871, 873, 945 |
| BsmBI | CGTCTC | 1 cut(s) | 445 |
| BsmFI | GGGAC | 2 cut(s) | 1052, 2966 |
| BsmI | GAATGC | 3 cut(s) | 2088, 2441, 2726 |
| Bso31I | GGTCTC | 1 cut(s) | 614 |
| BsoBI | CYCGRG | 3 cut(s) | 485, 1481, 2499 |
| Bsp119I | TTCGAA | 2 cut(s) | 1085, 1499 |
| Bsp120I | GGGCCC | 1 cut(s) | 1798 |
| Bsp1286I | GDGCHC | 7 cut(s) | 492, 611, 643, 1488, 1534, 1802, 1908 |
| Bsp19I | CCATGG | 1 cut(s) | 3047 |
| BspACI | CCGC | 7 cut(s) | 414, 504, 636, 662, 1381, 2106, 2168 |
| BspDI | ATCGAT | 1 cut(s) | 2659 |
| BspFNI | CGCG | 1 cut(s) | 506 |
| BspHI | TCATGA | 1 cut(s) | 2893 |
| BspMAI | CTGCAG | 1 cut(s) | 2511 |
| BspOI | GCTAGC | 2 cut(s) | 737, 2199 |
| BspQI | GCTCTTC | 1 cut(s) | 2894 |
| BspT104I | TTCGAA | 2 cut(s) | 1085, 1499 |
| BspT107I | GGYRCC | 2 cut(s) | 233, 3038 |
| BspTNI | GGTCTC | 1 cut(s) | 614 |
| BsrDI | GCAATG | 3 cut(s) | 538, 1503, 2868 |
| BsrFI | RCCGGY | 1 cut(s) | 3188 |
| BssAI | RCCGGY | 1 cut(s) | 3188 |
| BssECI | CCNNGG | 8 cut(s) | 58, 673, 674, 757, 1205, 1480, 1481, 3047 |
| BssNI | GRCGYC | 1 cut(s) | 234 |
| BssSI | CACGAG | 1 cut(s) | 2939 |
| BssT1I | CCWWGG | 2 cut(s) | 1205, 3047 |
| Bst2BI | CACGAG | 1 cut(s) | 2939 |
| Bst2UI | CCWGG | 3 cut(s) | 20, 60, 675 |
| Bst6I | CTCTTC | 2 cut(s) | 2191, 2894 |
| BstACI | GRCGYC | 1 cut(s) | 234 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2867 |
| BstBAI | YACGTR | 1 cut(s) | 3323 |
| BstBI | TTCGAA | 2 cut(s) | 1085, 1499 |
| BstC8I | GCNNGC | 6 cut(s) | 735, 2197, 2357, 2667, 2689, 2702 |
| BstDSI | CCRYGG | 2 cut(s) | 757, 3047 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1925 |
| BstFNI | CGCG | 1 cut(s) | 506 |
| BstH2I | RGCGCY | 2 cut(s) | 237, 2965 |
| BstHHI | GCGC | 3 cut(s) | 236, 2964, 3171 |
| BstMAI | GTCTC | 5 cut(s) | 445, 614, 871, 873, 945 |
| BstMCI | CGRYCG | 1 cut(s) | 307 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 205, 231, 739, 1332, 1519, 2085, 2697, 2867, 3332 |
| BstNI | CCWGG | 3 cut(s) | 20, 60, 675 |
| BstSCI | CCNGG | 8 cut(s) | 18, 58, 257, 394, 673, 1480, 1481, 2623 |
| BstSFI | CTRYAG | 3 cut(s) | 840, 2244, 2507 |
| BstSLI | GKGCMC | 2 cut(s) | 1802, 1908 |
| BstUI | CGCG | 1 cut(s) | 506 |
| BstV1I | GCAGC | 7 cut(s) | 234, 1347, 1531, 2461, 2493, 2882, 3322 |
| BstV2I | GAAGAC | 2 cut(s) | 1287, 2202 |
| BstX2I | RGATCY | 5 cut(s) | 346, 1831, 2248, 2380, 2594 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1987 |
| BstYI | RGATCY | 5 cut(s) | 346, 1831, 2248, 2380, 2594 |
| Bsu15I | ATCGAT | 1 cut(s) | 2659 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1713, 2275 |
| BsuI | GTATCC | 2 cut(s) | 307, 1293 |
| BsuTUI | ATCGAT | 1 cut(s) | 2659 |
| BtgI | CCRYGG | 2 cut(s) | 757, 3047 |
| BtsI | GCAGTG | 3 cut(s) | 1010, 1908, 2206 |
| Cac8I | GCNNGC | 6 cut(s) | 735, 2197, 2357, 2667, 2689, 2702 |
| CaiI | CAGNNNCTG | 2 cut(s) | 680, 1070 |
| CciI | TCATGA | 1 cut(s) | 2893 |
| CfoI | GCGC | 3 cut(s) | 236, 2964, 3171 |
| Cfr10I | RCCGGY | 1 cut(s) | 3188 |
| Cfr13I | GGNCC | 8 cut(s) | 186, 851, 945, 1679, 1798, 1799, 1868, 2750 |
| Cfr9I | CCCGGG | 1 cut(s) | 1481 |
| ClaI | ATCGAT | 1 cut(s) | 2659 |
| CseI | GACGC | 1 cut(s) | 1925 |
| Csp6I | GTAC | 7 cut(s) | 271, 475, 683, 1466, 2782, 3039, 3109 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2703, 2738 |
| CviQI | GTAC | 7 cut(s) | 271, 475, 683, 1466, 2782, 3039, 3109 |
| DinI | GGCGCC | 1 cut(s) | 235 |
| DraI | TTTAAA | 2 cut(s) | 2443, 2802 |
| DriI | GACNNNNNGTC | 1 cut(s) | 499 |
| EaeI | YGGCCR | 2 cut(s) | 2493, 3290 |
| Eam1104I | CTCTTC | 2 cut(s) | 2191, 2894 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 499 |
| EarI | CTCTTC | 2 cut(s) | 2191, 2894 |
| Ecl136II | GAGCTC | 2 cut(s) | 490, 1532 |
| Eco130I | CCWWGG | 2 cut(s) | 1205, 3047 |
| Eco24I | GRGCYC | 6 cut(s) | 492, 611, 643, 1488, 1534, 1802 |
| Eco31I | GGTCTC | 1 cut(s) | 614 |
| Eco47I | GGWCC | 3 cut(s) | 945, 1868, 2750 |
| Eco53kI | GAGCTC | 2 cut(s) | 490, 1532 |
| Eco57I | CTGAAG | 2 cut(s) | 2103, 2658 |
| Eco81I | CCTNAGG | 2 cut(s) | 1713, 2275 |
| Eco88I | CYCGRG | 3 cut(s) | 485, 1481, 2499 |
| EcoICRI | GAGCTC | 2 cut(s) | 490, 1532 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1925 |
| EcoO109I | RGGNCCY | 2 cut(s) | 851, 1679 |
| EcoRI | GAATTC | 2 cut(s) | 1374, 2329 |
| EcoRII | CCWGG | 3 cut(s) | 18, 58, 673 |
| EcoT14I | CCWWGG | 2 cut(s) | 1205, 3047 |
| EcoT38I | GRGCYC | 6 cut(s) | 492, 611, 643, 1488, 1534, 1802 |
| EgeI | GGCGCC | 1 cut(s) | 235 |
| EheI | GGCGCC | 1 cut(s) | 235 |
| ErhI | CCWWGG | 2 cut(s) | 1205, 3047 |
| Esp3I | CGTCTC | 1 cut(s) | 445 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 175, 207 |
| FaqI | GGGAC | 2 cut(s) | 1052, 2966 |
| FauI | CCCGC | 1 cut(s) | 629 |
| FauNDI | CATATG | 2 cut(s) | 826, 1885 |
| FbaI | TGATCA | 1 cut(s) | 1759 |
| FblI | GTMKAC | 2 cut(s) | 143, 303 |
| Fnu4HI | GCNGC | 7 cut(s) | 223, 1336, 1520, 2475, 2507, 2871, 3336 |
| FriOI | GRGCYC | 6 cut(s) | 492, 611, 643, 1488, 1534, 1802 |
| Fsp4HI | GCNGC | 7 cut(s) | 223, 1336, 1520, 2475, 2507, 2871, 3336 |
| FspBI | CTAG | 7 cut(s) | 246, 734, 1371, 2196, 2285, 2391, 2696 |
| GlaI | GCGC | 3 cut(s) | 235, 2963, 3170 |
| GluI | GCNGC | 7 cut(s) | 223, 1336, 1520, 2475, 2507, 2871, 3336 |
| GsuI | CTGGAG | 3 cut(s) | 1182, 2446, 3042 |
| HaeII | RGCGCY | 2 cut(s) | 237, 2965 |
| HgaI | GACGC | 1 cut(s) | 1925 |
| HhaI | GCGC | 3 cut(s) | 236, 2964, 3171 |
| Hin1I | GRCGYC | 1 cut(s) | 234 |
| Hin6I | GCGC | 3 cut(s) | 234, 2962, 3169 |
| HinP1I | GCGC | 3 cut(s) | 234, 2962, 3169 |
| HincII | GTYRAC | 1 cut(s) | 304 |
| HindII | GTYRAC | 1 cut(s) | 304 |
| HphI | GGTGA | 9 cut(s) | 293, 704, 1271, 1606, 2030, 2699, 2800, 2993, 3100 |
| Hpy166II | GTNNAC | 5 cut(s) | 144, 304, 836, 2575, 3109 |
| Hpy8I | GTNNAC | 5 cut(s) | 144, 304, 836, 2575, 3109 |
| Hpy99I | CGWCG | 9 cut(s) | 180, 278, 305, 449, 452, 455, 473, 497, 2844 |
| HpyCH4IV | ACGT | 5 cut(s) | 273, 453, 832, 1197, 3322 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 205, 231, 739, 1332, 1519, 2085, 2697, 2867, 3332 |
| HpySE526I | ACGT | 5 cut(s) | 273, 453, 832, 1197, 3322 |
| Hsp92I | GRCGYC | 1 cut(s) | 234 |
| HspAI | GCGC | 3 cut(s) | 234, 2962, 3169 |
| KasI | GGCGCC | 1 cut(s) | 233 |
| KpnI | GGTACC | 1 cut(s) | 3042 |
| Ksp22I | TGATCA | 1 cut(s) | 1759 |
| LguI | GCTCTTC | 1 cut(s) | 2894 |
| LmnI | GCTCC | 7 cut(s) | 270, 333, 410, 646, 2179, 3061, 3316 |
| Lsp1109I | GCAGC | 7 cut(s) | 234, 1347, 1531, 2461, 2493, 2882, 3322 |
| LweI | GCATC | 4 cut(s) | 1347, 1771, 2318, 2857 |
| MaeI | CTAG | 7 cut(s) | 246, 734, 1371, 2196, 2285, 2391, 2696 |
| MaeII | ACGT | 5 cut(s) | 273, 453, 832, 1197, 3322 |
| MaeIII | GTNAC | 9 cut(s) | 905, 1343, 1628, 1916, 2110, 2269, 2755, 2773, 3088 |
| MfeI | CAATTG | 5 cut(s) | 728, 1216, 1238, 1912, 2065 |
| MflI | RGATCY | 5 cut(s) | 346, 1831, 2248, 2380, 2594 |
| MhlI | GDGCHC | 7 cut(s) | 492, 611, 643, 1488, 1534, 1802, 1908 |
| MlsI | TGGCCA | 1 cut(s) | 2495 |
| MluNI | TGGCCA | 1 cut(s) | 2495 |
| Mly113I | GGCGCC | 1 cut(s) | 234 |
| MlyI | GAGTC | 5 cut(s) | 404, 608, 707, 1940, 3278 |
| MmeI | TCCRAC | 2 cut(s) | 432, 468 |
| Mox20I | TGGCCA | 1 cut(s) | 2495 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1893, 2889 |
| MscI | TGGCCA | 1 cut(s) | 2495 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1254, 1560 |
| Msp20I | TGGCCA | 1 cut(s) | 2495 |
| MspA1I | CMGCKG | 2 cut(s) | 1381, 3335 |
| MspR9I | CCNGG | 8 cut(s) | 20, 60, 259, 396, 675, 1482, 1483, 2625 |
| MunI | CAATTG | 5 cut(s) | 728, 1216, 1238, 1912, 2065 |
| Mva1269I | GAATGC | 3 cut(s) | 2088, 2441, 2726 |
| MvaI | CCWGG | 3 cut(s) | 20, 60, 675 |
| MvnI | CGCG | 1 cut(s) | 506 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 205, 231, 739, 1332, 1519, 2085, 2697, 2867, 3332 |
| NarI | GGCGCC | 1 cut(s) | 234 |
| NciI | CCSGG | 5 cut(s) | 259, 396, 1482, 1483, 2625 |
| NcoI | CCATGG | 1 cut(s) | 3047 |
| NdeI | CATATG | 2 cut(s) | 826, 1885 |
| NheI | GCTAGC | 2 cut(s) | 733, 2195 |
| NmeAIII | GCCGAG | 1 cut(s) | 3268 |
| NmuCI | GTSAC | 4 cut(s) | 1916, 2755, 2773, 3088 |
| NspV | TTCGAA | 2 cut(s) | 1085, 1499 |
| PaeR7I | CTCGAG | 2 cut(s) | 485, 2499 |
| PagI | TCATGA | 1 cut(s) | 2893 |
| PasI | CCCWGGG | 1 cut(s) | 674 |
| PciSI | GCTCTTC | 1 cut(s) | 2894 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 300, 435, 444, 474, 483 |
| PctI | GAATGC | 3 cut(s) | 2088, 2441, 2726 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1893, 2889 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 631, 3048 |
| PfoI | TCCNGGA | 1 cut(s) | 257 |
| PkrI | GCNGC | 7 cut(s) | 224, 1337, 1521, 2476, 2508, 2872, 3337 |
| PleI | GAGTC | 5 cut(s) | 404, 607, 706, 1940, 3278 |
| PluTI | GGCGCC | 1 cut(s) | 237 |
| PpsI | GAGTC | 5 cut(s) | 404, 607, 706, 1940, 3278 |
| Ppu21I | YACGTR | 1 cut(s) | 3323 |
| PshBI | ATTAAT | 1 cut(s) | 363 |
| Psp124BI | GAGCTC | 2 cut(s) | 492, 1534 |
| Psp1406I | AACGTT | 1 cut(s) | 1197 |
| Psp6I | CCWGG | 3 cut(s) | 18, 58, 673 |
| PspGI | CCWGG | 3 cut(s) | 18, 58, 673 |
| PspOMI | GGGCCC | 1 cut(s) | 1798 |
| PspPI | GGNCC | 8 cut(s) | 186, 851, 945, 1679, 1798, 1799, 1868, 2750 |
| PspXI | VCTCGAGB | 1 cut(s) | 485 |
| PstI | CTGCAG | 1 cut(s) | 2511 |
| PstNI | CAGNNNCTG | 2 cut(s) | 680, 1070 |
| PsuI | RGATCY | 5 cut(s) | 346, 1831, 2248, 2380, 2594 |
| PvuII | CAGCTG | 1 cut(s) | 3335 |
| RsaI | GTAC | 7 cut(s) | 272, 476, 684, 1467, 2783, 3040, 3110 |
| RsaNI | GTAC | 7 cut(s) | 271, 475, 683, 1466, 2782, 3039, 3109 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1254, 1560 |
| SacI | GAGCTC | 2 cut(s) | 492, 1534 |
| SalI | GTCGAC | 1 cut(s) | 302 |
| SapI | GCTCTTC | 1 cut(s) | 2894 |
| SatI | GCNGC | 7 cut(s) | 223, 1336, 1520, 2475, 2507, 2871, 3336 |
| Sau96I | GGNCC | 8 cut(s) | 186, 851, 945, 1679, 1798, 1799, 1868, 2750 |
| SchI | GAGTC | 5 cut(s) | 404, 608, 707, 1940, 3278 |
| ScrFI | CCNGG | 8 cut(s) | 20, 60, 259, 396, 675, 1482, 1483, 2625 |
| SduI | GDGCHC | 7 cut(s) | 492, 611, 643, 1488, 1534, 1802, 1908 |
| SfaNI | GCATC | 4 cut(s) | 1347, 1771, 2318, 2857 |
| SfcI | CTRYAG | 3 cut(s) | 840, 2244, 2507 |
| SfoI | GGCGCC | 1 cut(s) | 235 |
| Sfr274I | CTCGAG | 2 cut(s) | 485, 2499 |
| SfuI | TTCGAA | 2 cut(s) | 1085, 1499 |
| SinI | GGWCC | 3 cut(s) | 945, 1868, 2750 |
| SlaI | CTCGAG | 2 cut(s) | 485, 2499 |
| SmaI | CCCGGG | 1 cut(s) | 1483 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1254, 1560 |
| SmlI | CTYRAG | 4 cut(s) | 209, 485, 2499, 2531 |
| SmoI | CTYRAG | 4 cut(s) | 209, 485, 2499, 2531 |
| SsiI | CCGC | 7 cut(s) | 414, 504, 636, 662, 1381, 2106, 2168 |
| SspDI | GGCGCC | 1 cut(s) | 233 |
| SspI | AATATT | 3 cut(s) | 361, 616, 2719 |
| SspMI | CTAG | 7 cut(s) | 246, 734, 1371, 2196, 2285, 2391, 2696 |
| SstI | GAGCTC | 2 cut(s) | 492, 1534 |
| StyD4I | CCNGG | 8 cut(s) | 18, 58, 257, 394, 673, 1480, 1481, 2623 |
| StyI | CCWWGG | 2 cut(s) | 1205, 3047 |
| TaiI | ACGT | 5 cut(s) | 276, 456, 835, 1200, 3325 |
| TaqII | GACCGA | 2 cut(s) | 321, 933 |
| TatI | WGTACW | 2 cut(s) | 2781, 3108 |
| TseFI | GTSAC | 4 cut(s) | 1916, 2755, 2773, 3088 |
| TseI | GCWGC | 7 cut(s) | 222, 1335, 1519, 2474, 2506, 2870, 3335 |
| Tsp45I | GTSAC | 4 cut(s) | 1916, 2755, 2773, 3088 |
| TspGWI | ACGGA | 4 cut(s) | 289, 1331, 1483, 2580 |
| TspMI | CCCGGG | 1 cut(s) | 1481 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 631, 3048 |
| VpaK11BI | GGWCC | 3 cut(s) | 945, 1868, 2750 |
| VspI | ATTAAT | 1 cut(s) | 363 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1925 |
| XbaI | TCTAGA | 1 cut(s) | 1370 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2288, 3049 |
| XhoI | CTCGAG | 2 cut(s) | 485, 2499 |
| XmaI | CCCGGG | 1 cut(s) | 1481 |
| XmiI | GTMKAC | 2 cut(s) | 143, 303 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1893, 2889 |
| XspI | CTAG | 7 cut(s) | 246, 734, 1371, 2196, 2285, 2391, 2696 |