PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g03810 |
| malus_domestica | MD02G1036600.v1.1 MD15G1176700.v1.1 |
| prunus_persica | Prupe.7G238800_v2.0.a1 |
| pyrus_communis | pycom02g03010 pycom15g15820 |
| rosa_chinensis | RchiOBHm_Chr2g0089211 |
| rosa_laevigata | RLG00000016005 |
| rosa_multiflora | Rmu_sc0008322.1_g000024 Rmu_sc0030891.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00152140 |
| rosa_rugosa | Rorug01G0488400 Rorug01G0488500 |
| rosa_samantha | Rh2AG044100 Rh2BG042800 Rh2CG044300 Rh2DG043100 |
| rosa_wichuraiana | Rw2G003900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2219 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| AatII | GACGTC | 1 cut(s) | 324 |
| AccB1I | GGYRCC | 2 cut(s) | 284, 2714 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 381, 1293 |
| AccI | GTMKAC | 1 cut(s) | 306 |
| AccII | CGCG | 1 cut(s) | 303 |
| AclI | AACGTT | 1 cut(s) | 2394 |
| AclWI | GGATC | 7 cut(s) | 170, 280, 2340, 2624, 2637, 2912, 2954 |
| AcoI | YGGCCR | 2 cut(s) | 119, 543 |
| AcsI | RAATTY | 5 cut(s) | 694, 748, 1351, 2008, 2437 |
| AcuI | CTGAAG | 1 cut(s) | 1740 |
| AcyI | GRCGYC | 2 cut(s) | 285, 321 |
| AfaI | GTAC | 5 cut(s) | 254, 1607, 2459, 2709, 2721 |
| AflIII | ACRYGT | 1 cut(s) | 1811 |
| AgeI | ACCGGT | 1 cut(s) | 850 |
| AgsI | TTSAA | 7 cut(s) | 100, 529, 694, 733, 1519, 2599, 2746 |
| AjnI | CCWGG | 1 cut(s) | 1426 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2853, 2885 |
| Alw21I | GWGCWC | 1 cut(s) | 281 |
| Alw26I | GTCTC | 8 cut(s) | 149, 224, 446, 608, 832, 1661, 2701, 2894 |
| AlwI | GGATC | 7 cut(s) | 170, 280, 2340, 2624, 2637, 2912, 2954 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 381 |
| Ama87I | CYCGRG | 2 cut(s) | 462, 2178 |
| AoxI | GGCC | 7 cut(s) | 119, 543, 1235, 1423, 2091, 2730, 2972 |
| ApeKI | GCWGC | 8 cut(s) | 67, 93, 532, 1074, 1629, 2153, 2546, 3017 |
| ApoI | RAATTY | 5 cut(s) | 694, 748, 1351, 2008, 2437 |
| AsiGI | ACCGGT | 1 cut(s) | 850 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1220, 1614, 2565 |
| AspLEI | GCGC | 3 cut(s) | 107, 287, 2853 |
| AsuC2I | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876 |
| AsuNHI | GCTAGC | 1 cut(s) | 1886 |
| AvaI | CYCGRG | 2 cut(s) | 462, 2178 |
| AvaII | GGWCC | 9 cut(s) | 428, 459, 809, 1374, 1865, 1958, 2050, 2059, 2426 |
| BaeGI | GKGCMC | 1 cut(s) | 2240 |
| BalI | TGGCCA | 1 cut(s) | 545 |
| BamHI | GGATCC | 1 cut(s) | 2629 |
| BanI | GGYRCC | 2 cut(s) | 284, 2714 |
| BanII | GRGCYC | 1 cut(s) | 281 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 125, 157 |
| BauI | CACGAG | 2 cut(s) | 30, 2570 |
| Bbv12I | GWGCWC | 1 cut(s) | 281 |
| BbvCI | CCTCAGC | 2 cut(s) | 1869, 2634 |
| BbvI | GCAGC | 8 cut(s) | 79, 105, 544, 1086, 1641, 2140, 2558, 3004 |
| BceAI | ACGGC | 2 cut(s) | 118, 514 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2135, 2169, 2628, 2662 |
| BciT130I | CCWGG | 1 cut(s) | 1428 |
| BclI | TGATCA | 3 cut(s) | 760, 817, 1504 |
| BcnI | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876 |
| BcoDI | GTCTC | 8 cut(s) | 149, 224, 446, 608, 832, 1661, 2701, 2894 |
| BfmI | CTRYAG | 2 cut(s) | 91, 2186 |
| BfoI | RGCGCY | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 1927 |
| Bme1390I | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876, 1428 |
| Bme18I | GGWCC | 9 cut(s) | 428, 459, 809, 1374, 1865, 1958, 2050, 2059, 2426 |
| BmeT110I | CYCGRG | 2 cut(s) | 462, 2178 |
| BmrFI | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876, 1428 |
| BmrI | ACTGGG | 1 cut(s) | 2835 |
| BmsI | GCATC | 3 cut(s) | 1312, 1997, 2533 |
| BmtI | GCTAGC | 1 cut(s) | 1890 |
| BmuI | ACTGGG | 1 cut(s) | 2835 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2693 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2617, 2649 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1869, 2634 |
| BpuEI | CTTGAG | 5 cut(s) | 65, 1399, 1908, 1947, 2231 |
| BpuMI | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876 |
| Bsa29I | ATCGAT | 1 cut(s) | 2335 |
| BsaHI | GRCGYC | 2 cut(s) | 285, 321 |
| BsaI | GGTCTC | 3 cut(s) | 149, 224, 446 |
| BsaWI | WCCGGW | 3 cut(s) | 177, 201, 850 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 221, 251, 766, 796 |
| Bse118I | RCCGGY | 4 cut(s) | 215, 811, 850, 1043 |
| Bse1I | ACTGG | 5 cut(s) | 963, 1114, 2429, 2642, 2830 |
| Bse3DI | GCAATG | 5 cut(s) | 231, 412, 1248, 2544, 3015 |
| BseBI | CCWGG | 1 cut(s) | 1428 |
| BseCI | ATCGAT | 1 cut(s) | 2335 |
| BseMI | GCAATG | 5 cut(s) | 231, 412, 1248, 2544, 3015 |
| BseMII | CTCAG | 9 cut(s) | 503, 716, 1155, 1583, 1883, 1945, 2648, 2868, 2997 |
| BseNI | ACTGG | 5 cut(s) | 963, 1114, 2429, 2642, 2830 |
| BseRI | GAGGAG | 3 cut(s) | 2060, 2102, 2846 |
| BseSI | GKGCMC | 1 cut(s) | 2240 |
| BseX3I | CGGCCG | 1 cut(s) | 119 |
| BseXI | GCAGC | 8 cut(s) | 79, 105, 544, 1086, 1641, 2140, 2558, 3004 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BsgI | GTGCAG | 2 cut(s) | 857, 2139 |
| Bsh1236I | CGCG | 1 cut(s) | 303 |
| Bsh1285I | CGRYCG | 2 cut(s) | 122, 206 |
| BshFI | GGCC | 7 cut(s) | 121, 545, 1237, 1425, 2093, 2732, 2974 |
| BshNI | GGYRCC | 2 cut(s) | 284, 2714 |
| BshTI | ACCGGT | 1 cut(s) | 850 |
| BshVI | ATCGAT | 1 cut(s) | 2335 |
| BsiEI | CGRYCG | 2 cut(s) | 122, 206 |
| BsiHKAI | GWGCWC | 1 cut(s) | 281 |
| BsiHKCI | CYCGRG | 2 cut(s) | 462, 2178 |
| BsiWI | CGTACG | 1 cut(s) | 2707 |
| BsmAI | GTCTC | 8 cut(s) | 149, 224, 446, 608, 832, 1661, 2701, 2894 |
| BsmBI | CGTCTC | 1 cut(s) | 2701 |
| BsmI | GAATGC | 2 cut(s) | 107, 2402 |
| BsnI | GGCC | 7 cut(s) | 121, 545, 1237, 1425, 2093, 2732, 2974 |
| Bso31I | GGTCTC | 3 cut(s) | 149, 224, 446 |
| BsoBI | CYCGRG | 2 cut(s) | 462, 2178 |
| Bsp1286I | GDGCHC | 2 cut(s) | 281, 2240 |
| Bsp19I | CCATGG | 3 cut(s) | 2098, 2257, 2723 |
| BspANI | GGCC | 7 cut(s) | 121, 545, 1237, 1425, 2093, 2732, 2974 |
| BspCNI | CTCAG | 9 cut(s) | 504, 715, 1156, 1582, 1882, 1944, 2647, 2867, 2996 |
| BspDI | ATCGAT | 1 cut(s) | 2335 |
| BspFNI | CGCG | 1 cut(s) | 303 |
| BspMAI | CTGCAG | 1 cut(s) | 95 |
| BspOI | GCTAGC | 1 cut(s) | 1890 |
| BspPI | GGATC | 7 cut(s) | 170, 280, 2340, 2624, 2637, 2912, 2954 |
| BspQI | GCTCTTC | 1 cut(s) | 2570 |
| BspT107I | GGYRCC | 2 cut(s) | 284, 2714 |
| BspTNI | GGTCTC | 3 cut(s) | 149, 224, 446 |
| BsrDI | GCAATG | 5 cut(s) | 231, 412, 1248, 2544, 3015 |
| BsrFI | RCCGGY | 4 cut(s) | 215, 811, 850, 1043 |
| BsrI | ACTGG | 5 cut(s) | 963, 1114, 2429, 2642, 2830 |
| BssAI | RCCGGY | 4 cut(s) | 215, 811, 850, 1043 |
| BssNI | GRCGYC | 2 cut(s) | 285, 321 |
| BssSI | CACGAG | 2 cut(s) | 30, 2570 |
| BssT1I | CCWWGG | 6 cut(s) | 953, 1225, 1458, 2098, 2257, 2723 |
| Bst2BI | CACGAG | 2 cut(s) | 30, 2570 |
| Bst2UI | CCWGG | 1 cut(s) | 1428 |
| Bst6I | CTCTTC | 3 cut(s) | 1882, 2516, 2570 |
| BstACI | GRCGYC | 2 cut(s) | 285, 321 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 538, 1635, 2543, 3014 |
| BstC8I | GCNNGC | 5 cut(s) | 543, 1640, 1888, 2343, 3006 |
| BstDSI | CCRYGG | 3 cut(s) | 2098, 2257, 2723 |
| BstFNI | CGCG | 1 cut(s) | 303 |
| BstH2I | RGCGCY | 1 cut(s) | 288 |
| BstHHI | GCGC | 3 cut(s) | 107, 287, 2853 |
| BstMAI | GTCTC | 8 cut(s) | 149, 224, 446, 608, 832, 1661, 2701, 2894 |
| BstMCI | CGRYCG | 2 cut(s) | 122, 206 |
| BstNI | CCWGG | 1 cut(s) | 1428 |
| BstNSI | RCATGY | 4 cut(s) | 1674, 1789, 1815, 2042 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2693 |
| BstSCI | CCNGG | 9 cut(s) | 116, 128, 158, 430, 455, 461, 462, 874, 1426 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 2186 |
| BstSLI | GKGCMC | 1 cut(s) | 2240 |
| BstUI | CGCG | 1 cut(s) | 303 |
| BstV1I | GCAGC | 8 cut(s) | 79, 105, 544, 1086, 1641, 2140, 2558, 3004 |
| BstX2I | RGATCY | 2 cut(s) | 1927, 2629 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1094, 1858, 2149 |
| BstYI | RGATCY | 2 cut(s) | 1927, 2629 |
| BstZI | CGGCCG | 1 cut(s) | 119 |
| Bsu15I | ATCGAT | 1 cut(s) | 2335 |
| BsuRI | GGCC | 7 cut(s) | 121, 545, 1237, 1425, 2093, 2732, 2974 |
| BsuTUI | ATCGAT | 1 cut(s) | 2335 |
| BtgI | CCRYGG | 3 cut(s) | 2098, 2257, 2723 |
| BtgZI | GCGATG | 1 cut(s) | 516 |
| BtsI | GCAGTG | 2 cut(s) | 840, 2038 |
| BtsIMutI | CAGTG | 8 cut(s) | 509, 717, 840, 1824, 1844, 2038, 2436, 2649 |
| Cac8I | GCNNGC | 5 cut(s) | 543, 1640, 1888, 2343, 3006 |
| CaiI | CAGNNNCTG | 1 cut(s) | 381 |
| CfoI | GCGC | 3 cut(s) | 107, 287, 2853 |
| Cfr10I | RCCGGY | 4 cut(s) | 215, 811, 850, 1043 |
| Cfr9I | CCCGGG | 1 cut(s) | 462 |
| ClaI | ATCGAT | 1 cut(s) | 2335 |
| CpoI | CGGWCCG | 1 cut(s) | 428 |
| CseI | GACGC | 2 cut(s) | 292, 336 |
| Csp6I | GTAC | 5 cut(s) | 253, 1606, 2458, 2708, 2720 |
| CspAI | ACCGGT | 1 cut(s) | 850 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2379, 2414 |
| CspI | CGGWCCG | 1 cut(s) | 428 |
| CviQI | GTAC | 5 cut(s) | 253, 1606, 2458, 2708, 2720 |
| DinI | GGCGCC | 1 cut(s) | 286 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| EaeI | YGGCCR | 2 cut(s) | 119, 543 |
| EagI | CGGCCG | 1 cut(s) | 119 |
| Eam1104I | CTCTTC | 3 cut(s) | 1882, 2516, 2570 |
| EarI | CTCTTC | 3 cut(s) | 1882, 2516, 2570 |
| EciI | GGCGGA | 1 cut(s) | 361 |
| Ecl136II | GAGCTC | 1 cut(s) | 279 |
| EclXI | CGGCCG | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 6 cut(s) | 953, 1225, 1458, 2098, 2257, 2723 |
| Eco24I | GRGCYC | 1 cut(s) | 281 |
| Eco31I | GGTCTC | 3 cut(s) | 149, 224, 446 |
| Eco47I | GGWCC | 9 cut(s) | 428, 459, 809, 1374, 1865, 1958, 2050, 2059, 2426 |
| Eco52I | CGGCCG | 1 cut(s) | 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 279 |
| Eco57I | CTGAAG | 1 cut(s) | 1740 |
| Eco88I | CYCGRG | 2 cut(s) | 462, 2178 |
| EcoICRI | GAGCTC | 1 cut(s) | 279 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1374, 1865, 1958, 2059 |
| EcoRI | GAATTC | 3 cut(s) | 694, 1351, 2008 |
| EcoRII | CCWGG | 1 cut(s) | 1426 |
| EcoT14I | CCWWGG | 6 cut(s) | 953, 1225, 1458, 2098, 2257, 2723 |
| EcoT22I | ATGCAT | 1 cut(s) | 1327 |
| EcoT38I | GRGCYC | 1 cut(s) | 281 |
| EgeI | GGCGCC | 1 cut(s) | 286 |
| EheI | GGCGCC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 6 cut(s) | 953, 1225, 1458, 2098, 2257, 2723 |
| Esp3I | CGTCTC | 1 cut(s) | 2701 |
| FauI | CCCGC | 1 cut(s) | 300 |
| FauNDI | CATATG | 2 cut(s) | 1242, 2242 |
| FbaI | TGATCA | 3 cut(s) | 760, 817, 1504 |
| FblI | GTMKAC | 1 cut(s) | 306 |
| FriOI | GRGCYC | 1 cut(s) | 281 |
| GlaI | GCGC | 3 cut(s) | 106, 286, 2852 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| HaeII | RGCGCY | 1 cut(s) | 288 |
| HaeIII | GGCC | 7 cut(s) | 121, 545, 1237, 1425, 2093, 2732, 2974 |
| HgaI | GACGC | 2 cut(s) | 292, 336 |
| HhaI | GCGC | 3 cut(s) | 107, 287, 2853 |
| Hin1I | GRCGYC | 2 cut(s) | 285, 321 |
| Hin6I | GCGC | 3 cut(s) | 105, 285, 2851 |
| HinP1I | GCGC | 3 cut(s) | 105, 285, 2851 |
| HincII | GTYRAC | 4 cut(s) | 175, 307, 2378, 2823 |
| HindII | GTYRAC | 4 cut(s) | 175, 307, 2378, 2823 |
| HindIII | AAGCTT | 2 cut(s) | 765, 2077 |
| Hpy166II | GTNNAC | 9 cut(s) | 175, 307, 934, 1436, 1491, 1690, 2254, 2378, 2823 |
| Hpy8I | GTNNAC | 9 cut(s) | 175, 307, 934, 1436, 1491, 1690, 2254, 2378, 2823 |
| Hpy99I | CGWCG | 6 cut(s) | 188, 308, 317, 320, 323, 330 |
| HpyCH4IV | ACGT | 6 cut(s) | 183, 321, 625, 930, 1432, 2394 |
| HpySE526I | ACGT | 6 cut(s) | 183, 321, 625, 930, 1432, 2394 |
| Hsp92I | GRCGYC | 2 cut(s) | 285, 321 |
| HspAI | GCGC | 3 cut(s) | 105, 285, 2851 |
| KasI | GGCGCC | 1 cut(s) | 284 |
| Ksp22I | TGATCA | 3 cut(s) | 760, 817, 1504 |
| LguI | GCTCTTC | 1 cut(s) | 2570 |
| LmnI | GCTCC | 6 cut(s) | 141, 204, 264, 959, 2477, 2833 |
| Lsp1109I | GCAGC | 8 cut(s) | 79, 105, 544, 1086, 1641, 2140, 2558, 3004 |
| LweI | GCATC | 3 cut(s) | 1312, 1997, 2533 |
| MaeII | ACGT | 6 cut(s) | 183, 321, 625, 930, 1432, 2394 |
| MboII | GAAGA | 8 cut(s) | 220, 529, 925, 1746, 1869, 2533, 2558, 2587 |
| MfeI | CAATTG | 1 cut(s) | 536 |
| MflI | RGATCY | 2 cut(s) | 1927, 2629 |
| MhlI | GDGCHC | 2 cut(s) | 281, 2240 |
| MlsI | TGGCCA | 1 cut(s) | 545 |
| MluNI | TGGCCA | 1 cut(s) | 545 |
| Mly113I | GGCGCC | 1 cut(s) | 285 |
| MlyI | GAGTC | 3 cut(s) | 302, 372, 432 |
| MmeI | TCCRAC | 8 cut(s) | 336, 349, 406, 787, 1414, 2077, 2166, 2945 |
| Mox20I | TGGCCA | 1 cut(s) | 545 |
| Mph1103I | ATGCAT | 1 cut(s) | 1327 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1220, 1614, 2565 |
| MscI | TGGCCA | 1 cut(s) | 545 |
| MseI | TTAA | 7 cut(s) | 489, 897, 1067, 1413, 2075, 2112, 2477 |
| MslI | CAYNNNNRTG | 4 cut(s) | 501, 1002, 1446, 1448 |
| Msp20I | TGGCCA | 1 cut(s) | 545 |
| MspA1I | CMGCKG | 3 cut(s) | 1018, 1120, 1163 |
| MspR9I | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876, 1428 |
| MunI | CAATTG | 1 cut(s) | 536 |
| Mva1269I | GAATGC | 2 cut(s) | 107, 2402 |
| MvaI | CCWGG | 1 cut(s) | 1428 |
| MvnI | CGCG | 1 cut(s) | 303 |
| NarI | GGCGCC | 1 cut(s) | 285 |
| NciI | CCSGG | 8 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876 |
| NcoI | CCATGG | 3 cut(s) | 2098, 2257, 2723 |
| NdeI | CATATG | 2 cut(s) | 1242, 2242 |
| NheI | GCTAGC | 1 cut(s) | 1886 |
| NmeAIII | GCCGAG | 1 cut(s) | 809 |
| NmuCI | GTSAC | 5 cut(s) | 1897, 2416, 2431, 2449, 2770 |
| NsiI | ATGCAT | 1 cut(s) | 1327 |
| NspI | RCATGY | 4 cut(s) | 1674, 1789, 1815, 2042 |
| PaeR7I | CTCGAG | 1 cut(s) | 2178 |
| PciI | ACATGT | 1 cut(s) | 1811 |
| PciSI | GCTCTTC | 1 cut(s) | 2570 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 312, 351 |
| PctI | GAATGC | 2 cut(s) | 107, 2402 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1220, 1614, 2565 |
| PfeI | GAWTC | 7 cut(s) | 506, 1010, 1030, 1453, 1793, 1973, 2966 |
| Pfl23II | CGTACG | 1 cut(s) | 2707 |
| PflFI | GACNNNGTC | 2 cut(s) | 320, 432 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 381, 1293 |
| PfoI | TCCNGGA | 1 cut(s) | 128 |
| PinAI | ACCGGT | 1 cut(s) | 850 |
| PleI | GAGTC | 3 cut(s) | 302, 372, 431 |
| PluTI | GGCGCC | 1 cut(s) | 288 |
| PpsI | GAGTC | 3 cut(s) | 302, 372, 431 |
| PpuMI | RGGWCCY | 4 cut(s) | 1374, 1865, 1958, 2059 |
| PscI | ACATGT | 1 cut(s) | 1811 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2693 |
| PsiI | TTATAA | 1 cut(s) | 2219 |
| Psp124BI | GAGCTC | 1 cut(s) | 281 |
| Psp1406I | AACGTT | 1 cut(s) | 2394 |
| Psp5II | RGGWCCY | 4 cut(s) | 1374, 1865, 1958, 2059 |
| Psp6I | CCWGG | 1 cut(s) | 1426 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 1426 |
| PspLI | CGTACG | 1 cut(s) | 2707 |
| PspPPI | RGGWCCY | 4 cut(s) | 1374, 1865, 1958, 2059 |
| PstI | CTGCAG | 1 cut(s) | 95 |
| PstNI | CAGNNNCTG | 1 cut(s) | 381 |
| PsuI | RGATCY | 2 cut(s) | 1927, 2629 |
| PsyI | GACNNNGTC | 2 cut(s) | 320, 432 |
| PvuII | CAGCTG | 1 cut(s) | 1163 |
| RsaI | GTAC | 5 cut(s) | 254, 1607, 2459, 2709, 2721 |
| RsaNI | GTAC | 5 cut(s) | 253, 1606, 2458, 2708, 2720 |
| RseI | CAYNNNNRTG | 4 cut(s) | 501, 1002, 1446, 1448 |
| Rsr2I | CGGWCCG | 1 cut(s) | 428 |
| RsrII | CGGWCCG | 1 cut(s) | 428 |
| SacI | GAGCTC | 1 cut(s) | 281 |
| SalI | GTCGAC | 1 cut(s) | 305 |
| SapI | GCTCTTC | 1 cut(s) | 2570 |
| SaqAI | TTAA | 7 cut(s) | 489, 897, 1067, 1413, 2075, 2112, 2477 |
| SchI | GAGTC | 3 cut(s) | 302, 372, 432 |
| ScrFI | CCNGG | 9 cut(s) | 118, 130, 160, 432, 457, 463, 464, 876, 1428 |
| SduI | GDGCHC | 2 cut(s) | 281, 2240 |
| SfaNI | GCATC | 3 cut(s) | 1312, 1997, 2533 |
| SfcI | CTRYAG | 2 cut(s) | 91, 2186 |
| SfoI | GGCGCC | 1 cut(s) | 286 |
| Sfr274I | CTCGAG | 1 cut(s) | 2178 |
| SinI | GGWCC | 9 cut(s) | 428, 459, 809, 1374, 1865, 1958, 2050, 2059, 2426 |
| SlaI | CTCGAG | 1 cut(s) | 2178 |
| SmaI | CCCGGG | 1 cut(s) | 464 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 501, 1002, 1446, 1448 |
| SmlI | CTYRAG | 6 cut(s) | 80, 1378, 1923, 1962, 2178, 2210 |
| SmoI | CTYRAG | 6 cut(s) | 80, 1378, 1923, 1962, 2178, 2210 |
| SspDI | GGCGCC | 1 cut(s) | 284 |
| SspI | AATATT | 2 cut(s) | 1466, 1825 |
| SstI | GAGCTC | 1 cut(s) | 281 |
| StyD4I | CCNGG | 9 cut(s) | 116, 128, 158, 430, 455, 461, 462, 874, 1426 |
| StyI | CCWWGG | 6 cut(s) | 953, 1225, 1458, 2098, 2257, 2723 |
| TaiI | ACGT | 6 cut(s) | 186, 324, 628, 933, 1435, 2397 |
| TaqI | TCGA | 8 cut(s) | 206, 275, 306, 345, 354, 1208, 2179, 2335 |
| TatI | WGTACW | 1 cut(s) | 2457 |
| TauI | GCSGC | 5 cut(s) | 124, 153, 290, 485, 2977 |
| TfiI | GAWTC | 7 cut(s) | 506, 1010, 1030, 1453, 1793, 1973, 2966 |
| Tru1I | TTAA | 7 cut(s) | 489, 897, 1067, 1413, 2075, 2112, 2477 |
| Tru9I | TTAA | 7 cut(s) | 489, 897, 1067, 1413, 2075, 2112, 2477 |
| TscAI | CASTG | 8 cut(s) | 516, 717, 840, 1824, 1851, 2038, 2436, 2649 |
| TseFI | GTSAC | 5 cut(s) | 1897, 2416, 2431, 2449, 2770 |
| TseI | GCWGC | 8 cut(s) | 67, 93, 532, 1074, 1629, 2153, 2546, 3017 |
| Tsp45I | GTSAC | 5 cut(s) | 1897, 2416, 2431, 2449, 2770 |
| TspGWI | ACGGA | 5 cut(s) | 160, 435, 1023, 2789, 2882 |
| TspMI | CCCGGG | 1 cut(s) | 462 |
| TspRI | CASTG | 8 cut(s) | 516, 717, 840, 1824, 1851, 2038, 2436, 2649 |
| Tth111I | GACNNNGTC | 2 cut(s) | 320, 432 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 381, 1293 |
| VpaK11BI | GGWCC | 9 cut(s) | 428, 459, 809, 1374, 1865, 1958, 2050, 2059, 2426 |
| XapI | RAATTY | 5 cut(s) | 694, 748, 1351, 2008, 2437 |
| XceI | RCATGY | 4 cut(s) | 1674, 1789, 1815, 2042 |
| XhoI | CTCGAG | 1 cut(s) | 2178 |
| XmaI | CCCGGG | 1 cut(s) | 462 |
| XmiI | GTMKAC | 1 cut(s) | 306 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1220, 1614, 2565 |
| ZraI | GACGTC | 1 cut(s) | 322 |
| Zsp2I | ATGCAT | 1 cut(s) | 1327 |