PB1 domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g03810 |
| malus_domestica | MD02G1036600.v1.1 MD15G1176700.v1.1 |
| prunus_persica | Prupe.7G238800_v2.0.a1 |
| pyrus_communis | pycom02g03010 pycom15g15820 |
| rosa_chinensis | RchiOBHm_Chr2g0089211 |
| rosa_laevigata | RLG00000016005 |
| rosa_multiflora | Rmu_sc0008322.1_g000024 Rmu_sc0030891.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00152140 |
| rosa_rugosa | Rorug01G0488400 Rorug01G0488500 |
| rosa_samantha | Rh2AG044100 Rh2BG042800 Rh2CG044300 Rh2DG043100 |
| rosa_wichuraiana | Rw2G003900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2225 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| AatII | GACGTC | 1 cut(s) | 324 |
| AccB1I | GGYRCC | 1 cut(s) | 284 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 381, 1299 |
| AccBSI | CCGCTC | 1 cut(s) | 295 |
| AccI | GTMKAC | 2 cut(s) | 174, 306 |
| AclI | AACGTT | 1 cut(s) | 2466 |
| AclWI | GGATC | 9 cut(s) | 170, 280, 436, 2287, 2346, 2696, 2709, 2984, 3026 |
| AcoI | YGGCCR | 2 cut(s) | 119, 543 |
| AcsI | RAATTY | 5 cut(s) | 694, 1357, 2014, 2405, 2509 |
| AcuI | CTGAAG | 1 cut(s) | 1746 |
| AcyI | GRCGYC | 2 cut(s) | 285, 321 |
| AfaI | GTAC | 4 cut(s) | 254, 1613, 2531, 2781 |
| AflIII | ACRYGT | 2 cut(s) | 705, 1817 |
| AgsI | TTSAA | 8 cut(s) | 100, 529, 694, 742, 1075, 2410, 2671, 2818 |
| AjiI | CACGTC | 1 cut(s) | 304 |
| AjnI | CCWGG | 1 cut(s) | 1432 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2925, 2957 |
| Alw21I | GWGCWC | 1 cut(s) | 281 |
| Alw26I | GTCTC | 7 cut(s) | 149, 446, 608, 714, 838, 1667, 2773 |
| AlwI | GGATC | 9 cut(s) | 170, 280, 436, 2287, 2346, 2696, 2709, 2984, 3026 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 381 |
| Ama87I | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| AoxI | GGCC | 5 cut(s) | 119, 543, 1241, 2097, 3044 |
| ApeKI | GCWGC | 7 cut(s) | 67, 93, 532, 1080, 2159, 2618, 3089 |
| ApoI | RAATTY | 5 cut(s) | 694, 1357, 2014, 2405, 2509 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1226, 1620, 2637 |
| AspLEI | GCGC | 2 cut(s) | 287, 2925 |
| AspS9I | GGNCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| AsuC2I | CCSGG | 7 cut(s) | 118, 130, 160, 457, 463, 464, 882 |
| AsuNHI | GCTAGC | 1 cut(s) | 1892 |
| AvaI | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| AvaII | GGWCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| BaeGI | GKGCMC | 1 cut(s) | 2246 |
| BalI | TGGCCA | 1 cut(s) | 545 |
| BamHI | GGATCC | 1 cut(s) | 2701 |
| BanI | GGYRCC | 1 cut(s) | 284 |
| BanII | GRGCYC | 1 cut(s) | 281 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 125, 157 |
| BauI | CACGAG | 1 cut(s) | 2642 |
| Bbv12I | GWGCWC | 1 cut(s) | 281 |
| BbvCI | CCTCAGC | 3 cut(s) | 512, 1875, 2706 |
| BbvI | GCAGC | 7 cut(s) | 79, 105, 544, 1092, 2146, 2630, 3076 |
| BceAI | ACGGC | 1 cut(s) | 514 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2141, 2175, 2700, 2734 |
| BciT130I | CCWGG | 1 cut(s) | 1434 |
| BclI | TGATCA | 3 cut(s) | 763, 823, 1510 |
| BcnI | CCSGG | 7 cut(s) | 118, 130, 160, 457, 463, 464, 882 |
| BcoDI | GTCTC | 7 cut(s) | 149, 446, 608, 714, 838, 1667, 2773 |
| BfmI | CTRYAG | 2 cut(s) | 91, 2192 |
| BfoI | RGCGCY | 1 cut(s) | 288 |
| BglII | AGATCT | 1 cut(s) | 1933 |
| Bme1390I | CCNGG | 8 cut(s) | 118, 130, 160, 457, 463, 464, 882, 1434 |
| Bme18I | GGWCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| BmeT110I | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| BmgBI | CACGTC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| BmrFI | CCNGG | 8 cut(s) | 118, 130, 160, 457, 463, 464, 882, 1434 |
| BmrI | ACTGGG | 1 cut(s) | 2907 |
| BmsI | GCATC | 3 cut(s) | 1318, 2003, 2605 |
| BmtI | GCTAGC | 1 cut(s) | 1896 |
| BmuI | ACTGGG | 1 cut(s) | 2907 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2765 |
| BpmI | CTGGAG | 1 cut(s) | 2790 |
| Bpu10I | CCTNAGC | 4 cut(s) | 512, 1477, 1875, 2706 |
| BpuEI | CTTGAG | 3 cut(s) | 65, 1953, 2237 |
| BpuMI | CCSGG | 7 cut(s) | 118, 130, 160, 457, 463, 464, 882 |
| Bsa29I | ATCGAT | 1 cut(s) | 2341 |
| BsaHI | GRCGYC | 2 cut(s) | 285, 321 |
| BsaI | GGTCTC | 2 cut(s) | 149, 446 |
| BsaJI | CCNNGG | 8 cut(s) | 116, 462, 881, 959, 1231, 1464, 2263, 2795 |
| BsaWI | WCCGGW | 1 cut(s) | 869 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 221, 251, 293, 323, 769, 799 |
| Bse118I | RCCGGY | 1 cut(s) | 1313 |
| Bse1I | ACTGG | 5 cut(s) | 861, 969, 2501, 2714, 2902 |
| Bse3DI | GCAATG | 5 cut(s) | 231, 412, 1254, 2616, 3087 |
| BseBI | CCWGG | 1 cut(s) | 1434 |
| BseCI | ATCGAT | 1 cut(s) | 2341 |
| BseDI | CCNNGG | 8 cut(s) | 116, 462, 881, 959, 1231, 1464, 2263, 2795 |
| BseMI | GCAATG | 5 cut(s) | 231, 412, 1254, 2616, 3087 |
| BseNI | ACTGG | 5 cut(s) | 861, 969, 2501, 2714, 2902 |
| BseRI | GAGGAG | 2 cut(s) | 2066, 2918 |
| BseSI | GKGCMC | 1 cut(s) | 2246 |
| BseX3I | CGGCCG | 1 cut(s) | 119 |
| BseXI | GCAGC | 7 cut(s) | 79, 105, 544, 1092, 2146, 2630, 3076 |
| BseYI | CCCAGC | 2 cut(s) | 63, 606 |
| Bsh1285I | CGRYCG | 2 cut(s) | 122, 1702 |
| BshFI | GGCC | 5 cut(s) | 121, 545, 1243, 2099, 3046 |
| BshNI | GGYRCC | 1 cut(s) | 284 |
| BshVI | ATCGAT | 1 cut(s) | 2341 |
| BsiEI | CGRYCG | 2 cut(s) | 122, 1702 |
| BsiHKAI | GWGCWC | 1 cut(s) | 281 |
| BsiHKCI | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| BsiSI | CCGG | 9 cut(s) | 118, 129, 160, 282, 457, 463, 870, 881, 1314 |
| BsiWI | CGTACG | 1 cut(s) | 2779 |
| BsmAI | GTCTC | 7 cut(s) | 149, 446, 608, 714, 838, 1667, 2773 |
| BsmBI | CGTCTC | 1 cut(s) | 2773 |
| BsmI | GAATGC | 2 cut(s) | 107, 2474 |
| BsnI | GGCC | 5 cut(s) | 121, 545, 1243, 2099, 3046 |
| Bso31I | GGTCTC | 2 cut(s) | 149, 446 |
| BsoBI | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| Bsp1286I | GDGCHC | 2 cut(s) | 281, 2246 |
| Bsp19I | CCATGG | 2 cut(s) | 2263, 2795 |
| BspANI | GGCC | 5 cut(s) | 121, 545, 1243, 2099, 3046 |
| BspDI | ATCGAT | 1 cut(s) | 2341 |
| BspMAI | CTGCAG | 1 cut(s) | 95 |
| BspOI | GCTAGC | 1 cut(s) | 1896 |
| BspPI | GGATC | 9 cut(s) | 170, 280, 436, 2287, 2346, 2696, 2709, 2984, 3026 |
| BspQI | GCTCTTC | 2 cut(s) | 302, 2642 |
| BspT107I | GGYRCC | 1 cut(s) | 284 |
| BspTNI | GGTCTC | 2 cut(s) | 149, 446 |
| BsrBI | CCGCTC | 1 cut(s) | 295 |
| BsrDI | GCAATG | 5 cut(s) | 231, 412, 1254, 2616, 3087 |
| BsrFI | RCCGGY | 1 cut(s) | 1313 |
| BsrI | ACTGG | 5 cut(s) | 861, 969, 2501, 2714, 2902 |
| BssAI | RCCGGY | 1 cut(s) | 1313 |
| BssECI | CCNNGG | 8 cut(s) | 116, 462, 881, 959, 1231, 1464, 2263, 2795 |
| BssNI | GRCGYC | 2 cut(s) | 285, 321 |
| BssSI | CACGAG | 1 cut(s) | 2642 |
| BssT1I | CCWWGG | 5 cut(s) | 959, 1231, 1464, 2263, 2795 |
| Bst2BI | CACGAG | 1 cut(s) | 2642 |
| Bst2UI | CCWGG | 1 cut(s) | 1434 |
| Bst6I | CTCTTC | 5 cut(s) | 302, 1888, 2074, 2588, 2642 |
| BstACI | GRCGYC | 2 cut(s) | 285, 321 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2615, 3086 |
| BstC8I | GCNNGC | 5 cut(s) | 1051, 1646, 1894, 2415, 3078 |
| BstDSI | CCRYGG | 2 cut(s) | 2263, 2795 |
| BstH2I | RGCGCY | 1 cut(s) | 288 |
| BstHHI | GCGC | 2 cut(s) | 287, 2925 |
| BstMAI | GTCTC | 7 cut(s) | 149, 446, 608, 714, 838, 1667, 2773 |
| BstMCI | CGRYCG | 2 cut(s) | 122, 1702 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 76, 147, 1077, 1927, 2615, 2784, 3086 |
| BstNI | CCWGG | 1 cut(s) | 1434 |
| BstNSI | RCATGY | 4 cut(s) | 1680, 1795, 1821, 2048 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2765 |
| BstSCI | CCNGG | 8 cut(s) | 116, 128, 158, 455, 461, 462, 880, 1432 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 2192 |
| BstSLI | GKGCMC | 1 cut(s) | 2246 |
| BstV1I | GCAGC | 7 cut(s) | 79, 105, 544, 1092, 2146, 2630, 3076 |
| BstX2I | RGATCY | 3 cut(s) | 1933, 2279, 2701 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1100, 1864, 2155 |
| BstYI | RGATCY | 3 cut(s) | 1933, 2279, 2701 |
| BstZI | CGGCCG | 1 cut(s) | 119 |
| Bsu15I | ATCGAT | 1 cut(s) | 2341 |
| BsuRI | GGCC | 5 cut(s) | 121, 545, 1243, 2099, 3046 |
| BsuTUI | ATCGAT | 1 cut(s) | 2341 |
| BtgI | CCRYGG | 2 cut(s) | 2263, 2795 |
| BtgZI | GCGATG | 1 cut(s) | 516 |
| BtrI | CACGTC | 1 cut(s) | 304 |
| BtsI | GCAGTG | 1 cut(s) | 2044 |
| BtsIMutI | CAGTG | 4 cut(s) | 726, 1850, 2044, 2508 |
| Cac8I | GCNNGC | 5 cut(s) | 1051, 1646, 1894, 2415, 3078 |
| CaiI | CAGNNNCTG | 1 cut(s) | 381 |
| CfoI | GCGC | 2 cut(s) | 287, 2925 |
| Cfr10I | RCCGGY | 1 cut(s) | 1313 |
| Cfr13I | GGNCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| Cfr9I | CCCGGG | 1 cut(s) | 462 |
| ClaI | ATCGAT | 1 cut(s) | 2341 |
| CseI | GACGC | 1 cut(s) | 336 |
| Csp6I | GTAC | 4 cut(s) | 253, 1612, 2530, 2780 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2451, 2486 |
| CviQI | GTAC | 4 cut(s) | 253, 1612, 2530, 2780 |
| DinI | GGCGCC | 1 cut(s) | 286 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 182, 320 |
| EaeI | YGGCCR | 2 cut(s) | 119, 543 |
| EagI | CGGCCG | 1 cut(s) | 119 |
| Eam1104I | CTCTTC | 5 cut(s) | 302, 1888, 2074, 2588, 2642 |
| EarI | CTCTTC | 5 cut(s) | 302, 1888, 2074, 2588, 2642 |
| EciI | GGCGGA | 1 cut(s) | 361 |
| Ecl136II | GAGCTC | 1 cut(s) | 279 |
| EclXI | CGGCCG | 1 cut(s) | 119 |
| Eco130I | CCWWGG | 5 cut(s) | 959, 1231, 1464, 2263, 2795 |
| Eco24I | GRGCYC | 1 cut(s) | 281 |
| Eco31I | GGTCTC | 2 cut(s) | 149, 446 |
| Eco47I | GGWCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| Eco52I | CGGCCG | 1 cut(s) | 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 279 |
| Eco57I | CTGAAG | 1 cut(s) | 1746 |
| Eco88I | CYCGRG | 3 cut(s) | 353, 462, 2184 |
| EcoICRI | GAGCTC | 1 cut(s) | 279 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1380, 1871, 1964 |
| EcoRI | GAATTC | 3 cut(s) | 694, 1357, 2014 |
| EcoRII | CCWGG | 1 cut(s) | 1432 |
| EcoT14I | CCWWGG | 5 cut(s) | 959, 1231, 1464, 2263, 2795 |
| EcoT22I | ATGCAT | 1 cut(s) | 1333 |
| EcoT38I | GRGCYC | 1 cut(s) | 281 |
| EgeI | GGCGCC | 1 cut(s) | 286 |
| EheI | GGCGCC | 1 cut(s) | 286 |
| ErhI | CCWWGG | 5 cut(s) | 959, 1231, 1464, 2263, 2795 |
| Esp3I | CGTCTC | 1 cut(s) | 2773 |
| FauI | CCCGC | 1 cut(s) | 300 |
| FauNDI | CATATG | 3 cut(s) | 1248, 1449, 2248 |
| FbaI | TGATCA | 3 cut(s) | 763, 823, 1510 |
| FblI | GTMKAC | 2 cut(s) | 174, 306 |
| FriOI | GRGCYC | 1 cut(s) | 281 |
| GlaI | GCGC | 2 cut(s) | 286, 2924 |
| GsaI | CCCAGC | 2 cut(s) | 67, 610 |
| GsuI | CTGGAG | 1 cut(s) | 2790 |
| HaeII | RGCGCY | 1 cut(s) | 288 |
| HaeIII | GGCC | 5 cut(s) | 121, 545, 1243, 2099, 3046 |
| HapII | CCGG | 9 cut(s) | 118, 129, 160, 282, 457, 463, 870, 881, 1314 |
| HgaI | GACGC | 1 cut(s) | 336 |
| HhaI | GCGC | 2 cut(s) | 287, 2925 |
| Hin1I | GRCGYC | 2 cut(s) | 285, 321 |
| Hin6I | GCGC | 2 cut(s) | 285, 2923 |
| HinP1I | GCGC | 2 cut(s) | 285, 2923 |
| HincII | GTYRAC | 5 cut(s) | 175, 307, 2389, 2450, 2895 |
| HindII | GTYRAC | 5 cut(s) | 175, 307, 2389, 2450, 2895 |
| HindIII | AAGCTT | 3 cut(s) | 768, 1208, 2411 |
| HpaII | CCGG | 9 cut(s) | 118, 129, 160, 282, 457, 463, 870, 881, 1314 |
| Hpy166II | GTNNAC | 9 cut(s) | 175, 307, 940, 1497, 1696, 2260, 2389, 2450, 2895 |
| Hpy8I | GTNNAC | 9 cut(s) | 175, 307, 940, 1497, 1696, 2260, 2389, 2450, 2895 |
| Hpy99I | CGWCG | 8 cut(s) | 36, 176, 188, 308, 317, 320, 323, 330 |
| HpyCH4IV | ACGT | 7 cut(s) | 144, 183, 303, 321, 705, 936, 2466 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 76, 147, 1077, 1927, 2615, 2784, 3086 |
| HpySE526I | ACGT | 7 cut(s) | 144, 183, 303, 321, 705, 936, 2466 |
| Hsp92I | GRCGYC | 2 cut(s) | 285, 321 |
| HspAI | GCGC | 2 cut(s) | 285, 2923 |
| KasI | GGCGCC | 1 cut(s) | 284 |
| Ksp22I | TGATCA | 3 cut(s) | 763, 823, 1510 |
| LguI | GCTCTTC | 2 cut(s) | 302, 2642 |
| Lsp1109I | GCAGC | 7 cut(s) | 79, 105, 544, 1092, 2146, 2630, 3076 |
| LweI | GCATC | 3 cut(s) | 1318, 2003, 2605 |
| MaeII | ACGT | 7 cut(s) | 144, 183, 303, 321, 705, 936, 2466 |
| MbiI | CCGCTC | 1 cut(s) | 295 |
| MflI | RGATCY | 3 cut(s) | 1933, 2279, 2701 |
| MhlI | GDGCHC | 2 cut(s) | 281, 2246 |
| MlsI | TGGCCA | 1 cut(s) | 545 |
| MluNI | TGGCCA | 1 cut(s) | 545 |
| Mly113I | GGCGCC | 1 cut(s) | 285 |
| MlyI | GAGTC | 4 cut(s) | 302, 372, 432, 2060 |
| MmeI | TCCRAC | 7 cut(s) | 336, 349, 406, 1420, 2083, 2172, 3017 |
| Mox20I | TGGCCA | 1 cut(s) | 545 |
| Mph1103I | ATGCAT | 1 cut(s) | 1333 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1226, 1620, 2637 |
| MscI | TGGCCA | 1 cut(s) | 545 |
| MseI | TTAA | 7 cut(s) | 489, 732, 1419, 1524, 2081, 2118, 2549 |
| MslI | CAYNNNNRTG | 3 cut(s) | 501, 1008, 1452 |
| Msp20I | TGGCCA | 1 cut(s) | 545 |
| MspA1I | CMGCKG | 3 cut(s) | 1024, 1126, 1169 |
| MspI | CCGG | 9 cut(s) | 118, 129, 160, 282, 457, 463, 870, 881, 1314 |
| MspR9I | CCNGG | 8 cut(s) | 118, 130, 160, 457, 463, 464, 882, 1434 |
| Mva1269I | GAATGC | 2 cut(s) | 107, 2474 |
| MvaI | CCWGG | 1 cut(s) | 1434 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 76, 147, 1077, 1927, 2615, 2784, 3086 |
| NarI | GGCGCC | 1 cut(s) | 285 |
| NciI | CCSGG | 7 cut(s) | 118, 130, 160, 457, 463, 464, 882 |
| NcoI | CCATGG | 2 cut(s) | 2263, 2795 |
| NdeI | CATATG | 3 cut(s) | 1248, 1449, 2248 |
| NheI | GCTAGC | 1 cut(s) | 1892 |
| NmeAIII | GCCGAG | 1 cut(s) | 2334 |
| NmuCI | GTSAC | 6 cut(s) | 1630, 1903, 2488, 2503, 2521, 2842 |
| NsiI | ATGCAT | 1 cut(s) | 1333 |
| NspI | RCATGY | 4 cut(s) | 1680, 1795, 1821, 2048 |
| PaeR7I | CTCGAG | 2 cut(s) | 353, 2184 |
| PciI | ACATGT | 1 cut(s) | 1817 |
| PciSI | GCTCTTC | 2 cut(s) | 302, 2642 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 150, 180, 309, 312, 351 |
| PctI | GAATGC | 2 cut(s) | 107, 2474 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1226, 1620, 2637 |
| PfeI | GAWTC | 6 cut(s) | 506, 1016, 1036, 1459, 1979, 3038 |
| Pfl23II | CGTACG | 1 cut(s) | 2779 |
| PflFI | GACNNNGTC | 1 cut(s) | 320 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 381, 1299 |
| PfoI | TCCNGGA | 2 cut(s) | 128, 1432 |
| PleI | GAGTC | 4 cut(s) | 302, 372, 431, 2060 |
| PluTI | GGCGCC | 1 cut(s) | 288 |
| PpsI | GAGTC | 4 cut(s) | 302, 372, 431, 2060 |
| PpuMI | RGGWCCY | 3 cut(s) | 1380, 1871, 1964 |
| PscI | ACATGT | 1 cut(s) | 1817 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2765 |
| PsiI | TTATAA | 1 cut(s) | 2225 |
| Psp124BI | GAGCTC | 1 cut(s) | 281 |
| Psp1406I | AACGTT | 1 cut(s) | 2466 |
| Psp5II | RGGWCCY | 3 cut(s) | 1380, 1871, 1964 |
| Psp6I | CCWGG | 1 cut(s) | 1432 |
| PspFI | CCCAGC | 2 cut(s) | 63, 606 |
| PspGI | CCWGG | 1 cut(s) | 1432 |
| PspLI | CGTACG | 1 cut(s) | 2779 |
| PspPI | GGNCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| PspPPI | RGGWCCY | 3 cut(s) | 1380, 1871, 1964 |
| PstI | CTGCAG | 1 cut(s) | 95 |
| PstNI | CAGNNNCTG | 1 cut(s) | 381 |
| PsuI | RGATCY | 3 cut(s) | 1933, 2279, 2701 |
| PsyI | GACNNNGTC | 1 cut(s) | 320 |
| PvuII | CAGCTG | 1 cut(s) | 1169 |
| RsaI | GTAC | 4 cut(s) | 254, 1613, 2531, 2781 |
| RsaNI | GTAC | 4 cut(s) | 253, 1612, 2530, 2780 |
| RseI | CAYNNNNRTG | 3 cut(s) | 501, 1008, 1452 |
| SacI | GAGCTC | 1 cut(s) | 281 |
| SalI | GTCGAC | 2 cut(s) | 173, 305 |
| SapI | GCTCTTC | 2 cut(s) | 302, 2642 |
| SaqAI | TTAA | 7 cut(s) | 489, 732, 1419, 1524, 2081, 2118, 2549 |
| Sau96I | GGNCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| SchI | GAGTC | 4 cut(s) | 302, 372, 432, 2060 |
| ScrFI | CCNGG | 8 cut(s) | 118, 130, 160, 457, 463, 464, 882, 1434 |
| SduI | GDGCHC | 2 cut(s) | 281, 2246 |
| SfaNI | GCATC | 3 cut(s) | 1318, 2003, 2605 |
| SfcI | CTRYAG | 2 cut(s) | 91, 2192 |
| SfoI | GGCGCC | 1 cut(s) | 286 |
| Sfr274I | CTCGAG | 2 cut(s) | 353, 2184 |
| SinI | GGWCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| SlaI | CTCGAG | 2 cut(s) | 353, 2184 |
| SmaI | CCCGGG | 1 cut(s) | 464 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 501, 1008, 1452 |
| SmlI | CTYRAG | 5 cut(s) | 80, 353, 1968, 2184, 2216 |
| SmoI | CTYRAG | 5 cut(s) | 80, 353, 1968, 2184, 2216 |
| SspDI | GGCGCC | 1 cut(s) | 284 |
| SspI | AATATT | 2 cut(s) | 1472, 1831 |
| SstI | GAGCTC | 1 cut(s) | 281 |
| StyD4I | CCNGG | 8 cut(s) | 116, 128, 158, 455, 461, 462, 880, 1432 |
| StyI | CCWWGG | 5 cut(s) | 959, 1231, 1464, 2263, 2795 |
| TaiI | ACGT | 7 cut(s) | 147, 186, 306, 324, 708, 939, 2469 |
| TaqII | GACCGA | 1 cut(s) | 435 |
| TatI | WGTACW | 1 cut(s) | 2529 |
| TauI | GCSGC | 4 cut(s) | 124, 153, 290, 485 |
| TfiI | GAWTC | 6 cut(s) | 506, 1016, 1036, 1459, 1979, 3038 |
| Tru1I | TTAA | 7 cut(s) | 489, 732, 1419, 1524, 2081, 2118, 2549 |
| Tru9I | TTAA | 7 cut(s) | 489, 732, 1419, 1524, 2081, 2118, 2549 |
| TscAI | CASTG | 4 cut(s) | 726, 1857, 2044, 2508 |
| TseFI | GTSAC | 6 cut(s) | 1630, 1903, 2488, 2503, 2521, 2842 |
| TseI | GCWGC | 7 cut(s) | 67, 93, 532, 1080, 2159, 2618, 3089 |
| Tsp45I | GTSAC | 6 cut(s) | 1630, 1903, 2488, 2503, 2521, 2842 |
| TspGWI | ACGGA | 6 cut(s) | 117, 160, 435, 2507, 2581, 2954 |
| TspMI | CCCGGG | 1 cut(s) | 462 |
| TspRI | CASTG | 4 cut(s) | 726, 1857, 2044, 2508 |
| Tth111I | GACNNNGTC | 1 cut(s) | 320 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 381, 1299 |
| VpaK11BI | GGWCC | 7 cut(s) | 459, 1380, 1430, 1871, 1964, 2056, 2498 |
| XapI | RAATTY | 5 cut(s) | 694, 1357, 2014, 2405, 2509 |
| XceI | RCATGY | 4 cut(s) | 1680, 1795, 1821, 2048 |
| XhoI | CTCGAG | 2 cut(s) | 353, 2184 |
| XmaI | CCCGGG | 1 cut(s) | 462 |
| XmiI | GTMKAC | 2 cut(s) | 174, 306 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1226, 1620, 2637 |
| ZraI | GACGTC | 1 cut(s) | 322 |
| Zsp2I | ATGCAT | 1 cut(s) | 1333 |