Rroxscaffold_2G00152150

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
89220243 .. 89220829
587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152150.1

Sequence Viewer

Length: 318 bp
ATGATTCCGAAGCCACTGCAGACGTTGGGGAAAGGCGCCGCCGTAATCGTCGCCGGATTTCTGACTCTCAATCTCGCTTCCACCGCCACGATTGGAGCCATACGATTCGCCGTCGAATCCAGAAGGAAAAAGACTGCTTTGCCTTGTGGGGTTTGTAAAGGAAAAGGGTTTTACATATGCAAGTTGTGCAAAGGGAACGCCACCATTCAATGGTCGCCTCTGTATGACCCAGTAGCCATAAACCCCTGTCTCTGCCCAACCTGTGATGGGAATAGGGTACAGCGCTGCCTCAACTGTTTAGGGAAGGGATACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.15

Weight (kDa)

9.53

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75125
fragaria_vesca FvH4_1g03790 FvH4_1g03790
malus_domestica MD02G1036500.v1.1
prunus_persica Prupe.7G238900_v2.0.a1 Prupe.7G238900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089201
rosa_laevigata RLG00000016004
rosa_multiflora Rmu_sc0008322.1_g000025 Rmu_sc0011300.1_g000001
rosa_roxburghii Rroxscaffold_2G00152150
rosa_rugosa Rorug01G0488400
rosa_samantha Rh2BG042700 Rh2CG044200
rosa_wichuraiana Rw2G003910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 2 cut(s) 39, 84
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 210, 267
AgsI TTSAA 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 254
Aor51HI AGCGCT 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 285
AspLEI GCGC 2 cut(s) 38, 285
BanI GGYRCC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 26, 95
BcgI CGANNNNNNTGC 1 cut(s) 32
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 2 cut(s) 39, 286
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 2 cut(s) 39, 286
BlsI GCNGC 2 cut(s) 40, 287
BmiI GGNNCC 2 cut(s) 37, 97
BmrI ACTGGG 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 267
Bse1I ACTGG 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 210, 267
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 210, 267
BsmAI GTCTC 1 cut(s) 254
BspACI CCGC 2 cut(s) 39, 84
BspLI GGNNCC 2 cut(s) 37, 97
BspMAI CTGCAG 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 296, 314
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 186
BstH2I RGCGCY 2 cut(s) 39, 286
BstHHI GCGC 2 cut(s) 38, 285
BstMAI GTCTC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 83, 186
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 272
BsuI GTATCC 1 cut(s) 302
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
CfoI GCGC 2 cut(s) 38, 285
Csp6I GTAC 1 cut(s) 278
CviJI RGCY 3 cut(s) 13, 98, 236
CviKI_1 RGCY 3 cut(s) 13, 98, 236
CviQI GTAC 1 cut(s) 278
DinI GGCGCC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 5 cut(s) 101, 176, 178, 225, 239
FauNDI CATATG 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 39, 286
Fsp4HI GCNGC 2 cut(s) 39, 286
GlaI GCGC 2 cut(s) 37, 284
GluI GCNGC 2 cut(s) 39, 286
HaeII RGCGCY 2 cut(s) 39, 286
HapII CCGG 1 cut(s) 54
HhaI GCGC 2 cut(s) 38, 285
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 2 cut(s) 36, 283
HinP1I GCGC 2 cut(s) 36, 283
HinfI GANTC 4 cut(s) 4, 64, 105, 116
HpaII CCGG 1 cut(s) 54
Hpy188I TCNGA 2 cut(s) 9, 63
Hpy188III TCNNGA 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 53, 116
HpyAV CCTTC 2 cut(s) 117, 298
HpyCH4III ACNGT 2 cut(s) 296, 314
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 19, 180, 189
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 186
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 2 cut(s) 36, 283
KasI GGCGCC 1 cut(s) 35
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 5 cut(s) 67, 133, 243, 259, 274
Lsp1109I GCAGC 1 cut(s) 272
MaeII ACGT 1 cut(s) 23
Mly113I GGCGCC 1 cut(s) 36
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 2 cut(s) 228, 299
MspI CCGG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 83, 186
NarI GGCGCC 1 cut(s) 36
NdeI CATATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 37, 97
PfeI GAWTC 3 cut(s) 4, 105, 116
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 2 cut(s) 40, 287
PleI GAGTC 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 58
PspN4I GGNNCC 2 cut(s) 37, 97
PstI CTGCAG 1 cut(s) 21
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
SatI GCNGC 2 cut(s) 39, 286
SchI GAGTC 1 cut(s) 58
SetI ASST 2 cut(s) 26, 263
SfcI CTRYAG 1 cut(s) 17
SfoI GGCGCC 1 cut(s) 37
SgeI CNNG 9 cut(s) 66, 86, 100, 132, 156, 193, 242, 258, 273
SsiI CCGC 2 cut(s) 39, 84
SspDI GGCGCC 1 cut(s) 35
TaaI ACNGT 2 cut(s) 296, 314
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 114
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 4, 105, 116
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 285
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.