MD02G1066100.v1.1

Ubiquitin fusion degradation protein 1 homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
5346763 .. 5348046
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1066100.v1.1.491

Sequence Viewer

Length: 1284 bp
ATGATTTCTGAAGGCTACTTCAGCGATTCATCTGATGACGACTTTGTTGATGCTGCAGACTACAGCAGAGATTCATCTGATTCTGAAGATGTCGGTGAATCCTTCGCAGACTATAGCAGTAGTTCTTCTGAAGACCATAGTAGTAATTCTTCTGAAGATCATGTCAGTGATTCCGACTTCTATGGCGAATATATTGAAGAACTTAGTAGGAATTCTTCAGAAGATCATGTCAGTGATTCCGGATTCCGTGGTGGATATGTTGAAGAACTTGGATGTAAGCCCGAAGAGCCTGGCAGCGATCCTGAAGAACCTAGCAGTAATTCTAGTTCCTTTGAGCAGCTTTACCGTTGTTACCCTGTTTCCGTCATCAACAAGGAACATCTCGAAAAGGGCGATAAAATCATAATGCCGCTGTCAGCCCTCGATCGCCTTTTGTCGAATTTACAGGTCAATTACCCCATGTTGTTTGAACTGAGTAATCCCGGTAATTCTGGACGAGTTGCTCACTGCGGGGTGTTGGAATTTGTTGCCGATGAGGGCCTAACGTTTTTACCCTACTGGATGATGAAGAAGTTGCTTTTGCAAGACGGTGATCTTGTTCAGGTGAAAAACAAGAGCCTTGTGAAGGGAACATACATGAAGTTGCAGCCTCACACTATGGAATTTCTTGACGTCTCAGACCCGAAAGACGTCTTGGAGACTGCACTGAGGAGCTACTCTTGTTTAGCCACTGGTGATACCTTCATGGTCCCTTATAACAATGAGGAGTACTACATCGACGTAATTGAAACAAAGCCGTCCCCTGCAATCTGCATAATTGATACCGACTGCGAGGTTGATTTTGCCCCTCCACTTGATTATGTGGAGCCTCAAAAGCCAGCAGTGCCATCTACTCAGTCTAAGGAGAGACCGACAGAGGCCAAAAAGGATGAAGAACCGTCTGAGAAGATACCGAAATTCATCCCCTTTACCGGTTCAGCAAGACGATTGGATGGAAAACCGGCATTGGACCAATCGGTTGCACCGGTTTCCTCTACTGAAATTCTCGAGCAGAACCAACAGGAGAGTGAGAACGGAACCAAGGGCTCTATGTCATCAACTTCTGCGTCAACGGGTCGATCTAATGGAAAGCTCGTGTTTGGTAAAATTAGTTCAAATGCCAACTGTCCCACGAATGAAACCCCAAAAGTTGCCGCAGAGAAGAGCAGCCAAGAGCAGTCTCATAAGGCCGAAAAGCCAAAATTGCAAGCATTCACAGGGAAGAAGTATACACTGCAAGGATGA

Protein Analysis

428

Amino Acids

47.05

Weight (kDa)

4.5

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UFD1_N1 PF03152 111 - 207 2e-34 Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2 PF24842 209 - 284 8.9e-34 Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024291)

Species Orthologous Gene IDs
malus_domestica MD02G1066100.v1.1 MD15G1196800.v1.1
pyrus_communis pycom15g17580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
AatII GACGTC 2 cut(s) 675, 693
AccI GTMKAC 1 cut(s) 1268
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 3 cut(s) 410, 510, 1194
AclI AACGTT 1 cut(s) 545
AclWI GGATC 1 cut(s) 293
AcsI RAATTY 6 cut(s) 211, 439, 521, 662, 956, 1041
AcuI CTGAAG 7 cut(s) 4, 30, 105, 150, 174, 201, 324
AcyI GRCGYC 2 cut(s) 672, 690
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 2 cut(s) 625, 971
AgeI ACCGGT 2 cut(s) 971, 1024
AgsI TTSAA 5 cut(s) 197, 263, 470, 788, 1155
AjnI CCWGG 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 677, 709
AluBI AGCT 3 cut(s) 340, 714, 1132
AluI AGCT 3 cut(s) 340, 714, 1132
Alw26I GTCTC 4 cut(s) 679, 692, 901, 1224
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 1046
Aor13HI TCCGGA 1 cut(s) 239
AoxI GGCC 3 cut(s) 538, 918, 1227
ApeKI GCWGC 5 cut(s) 53, 294, 337, 646, 1206
ApoI RAATTY 6 cut(s) 211, 439, 521, 662, 956, 1041
AsiGI ACCGGT 2 cut(s) 971, 1024
AspS9I GGNCC 3 cut(s) 538, 748, 1009
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 4 cut(s) 107, 602, 616, 746
AvaI CYCGRG 1 cut(s) 1046
AvaII GGWCC 2 cut(s) 748, 1009
BanII GRGCYC 1 cut(s) 1088
BarI GAAGNNNNNNTAC 6 cut(s) 133, 165, 199, 231, 617, 649
BauI CACGAG 1 cut(s) 1133
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 40, 306, 349, 658, 1218
BccI CCATC 2 cut(s) 895, 986
BceAI ACGGC 1 cut(s) 781
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 4 cut(s) 679, 692, 901, 1224
BfaI CTAG 2 cut(s) 312, 324
BfmI CTRYAG 3 cut(s) 54, 61, 112
BisI GCNGC 7 cut(s) 54, 295, 338, 410, 647, 1194, 1207
BlsI GCNGC 7 cut(s) 55, 296, 339, 411, 648, 1195, 1208
BmcAI AGTACT 1 cut(s) 770
Bme1390I CCNGG 2 cut(s) 291, 483
Bme18I GGWCC 2 cut(s) 748, 1009
BmeT110I CYCGRG 1 cut(s) 1046
BmgT120I GGNCC 3 cut(s) 538, 748, 1009
BmiI GGNNCC 3 cut(s) 750, 867, 1078
BmrFI CCNGG 2 cut(s) 291, 483
BmsI GCATC 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 483
BsaHI GRCGYC 2 cut(s) 672, 690
BsaI GGTCTC 1 cut(s) 901
BsaJI CCNNGG 2 cut(s) 247, 1080
BsaWI WCCGGW 3 cut(s) 239, 971, 1024
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 971
Bse118I RCCGGY 3 cut(s) 971, 1000, 1024
Bse1I ACTGG 2 cut(s) 563, 736
BseAI TCCGGA 1 cut(s) 239
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 247, 1080
BseGI GGATG 5 cut(s) 278, 567, 934, 960, 997
BseLI CCNNNNNNNGG 2 cut(s) 625, 971
BseMII CTCAG 5 cut(s) 464, 690, 698, 908, 933
BseNI ACTGG 2 cut(s) 563, 736
BseRI GAGGAG 2 cut(s) 724, 779
BseXI GCAGC 5 cut(s) 40, 306, 349, 658, 1218
BsgI GTGCAG 1 cut(s) 687
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 3 cut(s) 540, 920, 1229
BshTI ACCGGT 2 cut(s) 971, 1024
BsiEI CGRYCG 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 5 cut(s) 240, 483, 972, 1001, 1025
BslFI GGGAC 3 cut(s) 734, 784, 1152
BslI CCNNNNNNNGG 2 cut(s) 625, 971
BsmAI GTCTC 4 cut(s) 679, 692, 901, 1224
BsmBI CGTCTC 1 cut(s) 679
BsmFI GGGAC 3 cut(s) 734, 784, 1152
BsmI GAATGC 1 cut(s) 1250
BsnI GGCC 3 cut(s) 540, 920, 1229
Bso31I GGTCTC 1 cut(s) 901
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 1 cut(s) 1088
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
BspACI CCGC 3 cut(s) 410, 510, 1194
BspANI GGCC 3 cut(s) 540, 920, 1229
BspCNI CTCAG 5 cut(s) 465, 689, 699, 907, 934
BspEI TCCGGA 1 cut(s) 239
BspLI GGNNCC 3 cut(s) 750, 867, 1078
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 293
BspQI GCTCTTC 2 cut(s) 279, 1196
BspTNI GGTCTC 1 cut(s) 901
BsrFI RCCGGY 3 cut(s) 971, 1000, 1024
BsrI ACTGG 2 cut(s) 563, 736
BssAI RCCGGY 3 cut(s) 971, 1000, 1024
BssECI CCNNGG 2 cut(s) 247, 1080
BssMI GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
BssNAI GTATAC 1 cut(s) 1269
BssNI GRCGYC 2 cut(s) 672, 690
BssSI CACGAG 1 cut(s) 1133
BssT1I CCWWGG 1 cut(s) 1080
Bst1107I GTATAC 1 cut(s) 1269
Bst2BI CACGAG 1 cut(s) 1133
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 347, 590, 939, 1166
Bst6I CTCTTC 2 cut(s) 279, 1196
BstACI GRCGYC 2 cut(s) 672, 690
BstC8I GCNNGC 2 cut(s) 879, 1248
BstDEI CTNAG 7 cut(s) 203, 473, 676, 707, 894, 900, 942
BstDSI CCRYGG 1 cut(s) 247
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 5 cut(s) 278, 567, 934, 960, 997
BstKTI GATC 6 cut(s) 160, 226, 301, 427, 595, 1121
BstMAI GTCTC 4 cut(s) 679, 692, 901, 1224
BstMBI GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 5 cut(s) 21, 286, 874, 883, 1243
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 289, 481
BstSFI CTRYAG 3 cut(s) 54, 61, 112
BstV1I GCAGC 5 cut(s) 40, 306, 349, 658, 1218
BstV2I GAAGAC 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 1269
BsuRI GGCC 3 cut(s) 540, 920, 1229
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 5 cut(s) 278, 567, 934, 960, 997
BtsI GCAGTG 3 cut(s) 505, 888, 1271
BtsIMutI CAGTG 7 cut(s) 172, 238, 505, 704, 729, 888, 1271
Cac8I GCNNGC 2 cut(s) 879, 1248
Cfr10I RCCGGY 3 cut(s) 971, 1000, 1024
Cfr13I GGNCC 3 cut(s) 538, 748, 1009
CseI GACGC 1 cut(s) 1095
Csp6I GTAC 1 cut(s) 769
CspAI ACCGGT 2 cut(s) 971, 1024
CviAII CATG 5 cut(s) 161, 227, 460, 637, 745
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 7 cut(s) 203, 473, 676, 707, 894, 900, 942
DpnI GATC 6 cut(s) 159, 225, 300, 426, 594, 1120
DpnII GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
Eam1104I CTCTTC 2 cut(s) 279, 1196
EarI CTCTTC 2 cut(s) 279, 1196
Eco130I CCWWGG 1 cut(s) 1080
Eco24I GRGCYC 1 cut(s) 1088
Eco31I GGTCTC 1 cut(s) 901
Eco47I GGWCC 2 cut(s) 748, 1009
Eco57I CTGAAG 7 cut(s) 4, 30, 105, 150, 174, 201, 324
Eco88I CYCGRG 1 cut(s) 1046
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoO109I RGGNCCY 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 1080
EcoT38I GRGCYC 1 cut(s) 1088
ErhI CCWWGG 1 cut(s) 1080
Esp3I CGTCTC 1 cut(s) 679
FaeI CATG 5 cut(s) 164, 230, 463, 640, 748
FaqI GGGAC 3 cut(s) 734, 784, 1152
FatI CATG 5 cut(s) 160, 226, 459, 636, 744
FauI CCCGC 1 cut(s) 503
FblI GTMKAC 1 cut(s) 1268
Fnu4HI GCNGC 7 cut(s) 54, 295, 338, 410, 647, 1194, 1207
FokI GGATG 5 cut(s) 285, 574, 941, 947, 1004
FriOI GRGCYC 1 cut(s) 1088
Fsp4HI GCNGC 7 cut(s) 54, 295, 338, 410, 647, 1194, 1207
FspBI CTAG 2 cut(s) 312, 324
GluI GCNGC 7 cut(s) 54, 295, 338, 410, 647, 1194, 1207
HaeIII GGCC 3 cut(s) 540, 920, 1229
HapII CCGG 5 cut(s) 240, 483, 972, 1001, 1025
HgaI GACGC 1 cut(s) 1095
Hin1I GRCGYC 2 cut(s) 672, 690
Hin1II CATG 5 cut(s) 164, 230, 463, 640, 748
HincII GTYRAC 1 cut(s) 1110
HindII GTYRAC 1 cut(s) 1110
HinfI GANTC 7 cut(s) 26, 71, 80, 98, 170, 236, 243
HpaII CCGG 5 cut(s) 240, 483, 972, 1001, 1025
HphI GGTGA 4 cut(s) 107, 602, 616, 746
Hpy166II GTNNAC 2 cut(s) 1110, 1269
Hpy188III TCNNGA 6 cut(s) 240, 302, 383, 492, 668, 1046
Hpy8I GTNNAC 2 cut(s) 1110, 1269
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 4 cut(s) 5, 112, 619, 751
HpyCH4III ACNGT 4 cut(s) 347, 590, 939, 1166
HpyCH4IV ACGT 4 cut(s) 545, 672, 690, 780
HpyCH4V TGCA 9 cut(s) 56, 583, 646, 704, 806, 813, 1022, 1246, 1276
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 286, 874, 883, 1243
HpyF3I CTNAG 7 cut(s) 203, 473, 676, 707, 894, 900, 942
HpySE526I ACGT 4 cut(s) 545, 672, 690, 780
Hsp92I GRCGYC 2 cut(s) 672, 690
Hsp92II CATG 5 cut(s) 164, 230, 463, 640, 748
Kpn2I TCCGGA 1 cut(s) 239
Kzo9I GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
LguI GCTCTTC 2 cut(s) 279, 1196
LmnI GCTCC 2 cut(s) 711, 865
Lsp1109I GCAGC 5 cut(s) 40, 306, 349, 658, 1218
LweI GCATC 1 cut(s) 40
MaeI CTAG 2 cut(s) 312, 324
MaeII ACGT 4 cut(s) 545, 672, 690, 780
MaeIII GTNAC 1 cut(s) 350
MalI GATC 6 cut(s) 159, 225, 300, 426, 594, 1120
MboI GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
MhlI GDGCHC 1 cut(s) 1088
MmeI TCCRAC 2 cut(s) 198, 498
MroI TCCGGA 1 cut(s) 239
MslI CAYNNNNRTG 2 cut(s) 165, 231
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 5 cut(s) 240, 483, 972, 1001, 1025
MspR9I CCNGG 2 cut(s) 291, 483
Mva1269I GAATGC 1 cut(s) 1250
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 21, 286, 874, 883, 1243
NciI CCSGG 1 cut(s) 483
NdeII GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
NlaIII CATG 5 cut(s) 164, 230, 463, 640, 748
NlaIV GGNNCC 3 cut(s) 750, 867, 1078
PaeR7I CTCGAG 1 cut(s) 1046
PciSI GCTCTTC 2 cut(s) 279, 1196
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 1 cut(s) 1250
PfeI GAWTC 7 cut(s) 26, 71, 80, 98, 170, 236, 243
PinAI ACCGGT 2 cut(s) 971, 1024
PkrI GCNGC 7 cut(s) 55, 296, 339, 411, 648, 1195, 1208
Ple19I CGATCG 1 cut(s) 427
PsiI TTATAA 1 cut(s) 756
Psp1406I AACGTT 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 750, 867, 1078
PspPI GGNCC 3 cut(s) 538, 748, 1009
PsrI GAACNNNNNNTAC 4 cut(s) 310, 342, 1135, 1167
PstI CTGCAG 1 cut(s) 58
PvuI CGATCG 1 cut(s) 427
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 2 cut(s) 165, 231
SapI GCTCTTC 2 cut(s) 279, 1196
SatI GCNGC 7 cut(s) 54, 295, 338, 410, 647, 1194, 1207
Sau3AI GATC 6 cut(s) 157, 223, 298, 424, 592, 1118
Sau96I GGNCC 3 cut(s) 538, 748, 1009
ScaI AGTACT 1 cut(s) 770
ScrFI CCNGG 2 cut(s) 291, 483
SduI GDGCHC 1 cut(s) 1088
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 3 cut(s) 54, 61, 112
Sfr274I CTCGAG 1 cut(s) 1046
SinI GGWCC 2 cut(s) 748, 1009
SlaI CTCGAG 1 cut(s) 1046
SmiMI CAYNNNNRTG 2 cut(s) 165, 231
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SsiI CCGC 3 cut(s) 410, 510, 1194
SspMI CTAG 2 cut(s) 312, 324
StyD4I CCNGG 2 cut(s) 289, 481
StyI CCWWGG 1 cut(s) 1080
TaaI ACNGT 4 cut(s) 347, 590, 939, 1166
TaiI ACGT 4 cut(s) 548, 675, 693, 783
TaqI TCGA 6 cut(s) 384, 423, 437, 777, 1047, 1117
TaqII GACCGA 1 cut(s) 925
TatI WGTACW 1 cut(s) 768
TauI GCSGC 2 cut(s) 412, 1196
TfiI GAWTC 7 cut(s) 26, 71, 80, 98, 170, 236, 243
TscAI CASTG 7 cut(s) 172, 238, 512, 711, 736, 888, 1278
TseI GCWGC 5 cut(s) 53, 294, 337, 646, 1206
TspDTI ATGAA 8 cut(s) 18, 63, 581, 653, 733, 945, 949, 1191
TspGWI ACGGA 3 cut(s) 236, 352, 1089
TspRI CASTG 7 cut(s) 172, 238, 512, 711, 736, 888, 1278
VpaK11BI GGWCC 2 cut(s) 748, 1009
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 6 cut(s) 211, 439, 521, 662, 956, 1041
XhoI CTCGAG 1 cut(s) 1046
XmiI GTMKAC 1 cut(s) 1268
XspI CTAG 2 cut(s) 312, 324
ZraI GACGTC 2 cut(s) 673, 691
ZrmI AGTACT 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.