Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0024291

Physical Location & Seq

Genomic Coordinates Reverse (-)

15613321 .. 15614448

Gene Structure 1128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1196800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGTTTCTGAAGACTGCATCAGCGATTCATCCAATGAAGAGTATGTCAGTGAATCCTCTGCAGATGATAGCAGTTCTTCTGAAGACCATAGCAGCAATCTTTCTGAAGACCATGTCAGTGATTCCGAATTCTATGGCGGAATTTATGAAGAACCTGGCAGTAATTTTAATTCCTTTGAGCAGCTTTACCGTTGTTATCCTGTTTCCTTCATCAACAAGGAACATCTCGAAAAGGGTGATAAAATCGTAATGCCGCCCTCAGCCCTCGACCGCCTAGTGTCAAATTTACAGGTCGATTACCCCATGTTGTTTGAACTCAGCAATCCTGGTAATTCTGGACGAGTTGCTCACTGTGGGGTGTCGGAATTTGTCGCTGATGAGGGCCTAATGTATTTACCATACTGGATGATGAAGAAGCTGCTTTTGCAAGAAGGCGATATTGTTTGGGTGAAAAACAAGAGCCTTGTGAAGGGAACATACATGAAGTTGCAGCCTCACGCCATGAATTTTCTTGACATATCAGACCCGAAAGCTGTTTTGGAGACTGCTTTGAGGAGATACTCGTGTTTAGCCACTGGTGACATTATCATGGTTCCTTATAACAATAAGGAGTACTACATTGACGTAATCGAGACAAATCCTTCCCCTGCAATCTGTATAATTGATACCGACTGCGAGGTTGATTTTGCCCCTCCACTTGATTATGTGGAGCCTCAAAAGCCAGCAGTGCCATCTACTCAGTCTAAGAAGAGACCGAGAGAAGCCGAAAGGGAAGAAGAACCACCTGAGAAGATTCCAAAATTCAGCCCCTTTACTGGTTCAGTAAGAAGATTGGATGGAAAACCGGCATTGGACCAACCAGTTGCACCGGTTTCCTCTCCCGGCATTCTCAAGCAGAACCAACTGGAGAGTGAGAATGGAACCAAAGGCTCTATGTTATCAACTTCTGTGTCAGCGCATCGACCTAAAGGAAAGCTTGTGTTTGGTACAAATGGTTTAAGTGCCAACCATCCCACGAATGAAACCCCAAAATTTGTCCCACAGAAGAGCAGCCAAGAGCAGTCTCAGAAGGCCGAAAAGCCAAAGTTGCAAGCATTCACAGGAAAGAAGTATACACTGCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

376

Amino Acids

41.69

Weight (kDa)

5.03

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	59 - 155	7.1e-35	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	157 - 232	8.8e-35	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024291)

Species	Orthologous Gene IDs
malus_domestica	MD02G1066100.v1.1 MD15G1196800.v1.1
pyrus_communis	pycom15g17580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	1112
AciI	CCGC	3 cut(s)	138, 254, 271
AcsI	RAATTY	7 cut(s)	128, 141, 283, 365, 505, 800, 1031
AcuI	CTGAAG	3 cut(s)	30, 102, 126
AfaI	GTAC	2 cut(s)	614, 988
AfiI	CCNNNNNNNGG	2 cut(s)	469, 815
AgeI	ACCGGT	1 cut(s)	868
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	154, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	4 cut(s)	184, 418, 533, 976
AluI	AGCT	4 cut(s)	184, 418, 533, 976
Alw26I	GTCTC	4 cut(s)	536, 626, 745, 1068
AoxI	GGCC	2 cut(s)	382, 1071
ApeKI	GCWGC	5 cut(s)	93, 181, 418, 490, 1050
ApoI	RAATTY	7 cut(s)	128, 141, 283, 365, 505, 800, 1031
AsiGI	ACCGGT	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	2 cut(s)	382, 853
AsuC2I	CCSGG	1 cut(s)	882
AsuHPI	GGTGA	3 cut(s)	248, 460, 590
AvaII	GGWCC	1 cut(s)	853
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BarI	GAAGNNNNNNTAC	2 cut(s)	461, 493
BauI	CACGAG	1 cut(s)	562
BbsI	GAAGAC	3 cut(s)	18, 90, 114
BbvCI	CCTCAGC	1 cut(s)	259
BbvI	GCAGC	5 cut(s)	105, 193, 405, 502, 1062
BccI	CCATC	3 cut(s)	739, 830, 1017
BciT130I	CCWGG	2 cut(s)	156, 327
BcnI	CCSGG	1 cut(s)	882
BcoDI	GTCTC	4 cut(s)	536, 626, 745, 1068
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	6 cut(s)	94, 182, 254, 419, 491, 1051
BlsI	GCNGC	6 cut(s)	95, 183, 255, 420, 492, 1052
BmcAI	AGTACT	1 cut(s)	614
Bme1390I	CCNGG	3 cut(s)	156, 327, 882
Bme18I	GGWCC	1 cut(s)	853
BmgT120I	GGNCC	2 cut(s)	382, 853
BmiI	GGNNCC	3 cut(s)	594, 711, 922
BmrFI	CCNGG	3 cut(s)	156, 327, 882
BmsI	GCATC	2 cut(s)	27, 967
BpiI	GAAGAC	3 cut(s)	18, 90, 114
BpmI	CTGGAG	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	875
BpuMI	CCSGG	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	745
BsaWI	WCCGGW	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 815
Bse118I	RCCGGY	2 cut(s)	844, 868
Bse1I	ACTGG	5 cut(s)	407, 580, 820, 860, 909
BseBI	CCWGG	2 cut(s)	156, 327
BseGI	GGATG	4 cut(s)	29, 411, 841, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	469, 815
BseMII	CTCAG	5 cut(s)	273, 331, 752, 777, 1079
BseNI	ACTGG	5 cut(s)	407, 580, 820, 860, 909
BseRI	GAGGAG	1 cut(s)	568
BseXI	GCAGC	5 cut(s)	105, 193, 405, 502, 1062
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	384, 1073
BshTI	ACCGGT	1 cut(s)	868
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	3 cut(s)	845, 869, 882
BslFI	GGGAC	1 cut(s)	1022
BslI	CCNNNNNNNGG	2 cut(s)	469, 815
BsmAI	GTCTC	4 cut(s)	536, 626, 745, 1068
BsmFI	GGGAC	1 cut(s)	1022
BsmI	GAATGC	2 cut(s)	885, 1094
BsnI	GGCC	2 cut(s)	384, 1073
Bso31I	GGTCTC	1 cut(s)	745
BspACI	CCGC	3 cut(s)	138, 254, 271
BspANI	GGCC	2 cut(s)	384, 1073
BspCNI	CTCAG	5 cut(s)	272, 330, 751, 778, 1078
BspLI	GGNNCC	3 cut(s)	594, 711, 922
BspMAI	CTGCAG	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	1040
BspTNI	GGTCTC	1 cut(s)	745
BsrFI	RCCGGY	2 cut(s)	844, 868
BsrI	ACTGG	5 cut(s)	407, 580, 820, 860, 909
BssAI	RCCGGY	2 cut(s)	844, 868
BssNAI	GTATAC	1 cut(s)	1113
BssSI	CACGAG	1 cut(s)	562
Bst1107I	GTATAC	1 cut(s)	1113
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	2 cut(s)	156, 327
Bst4CI	ACNGT	2 cut(s)	191, 353
Bst6I	CTCTTC	3 cut(s)	33, 743, 1040
BstC8I	GCNNGC	2 cut(s)	723, 1092
BstDEI	CTNAG	6 cut(s)	259, 317, 738, 744, 786, 1065
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	4 cut(s)	29, 411, 841, 1009
BstHHI	GCGC	1 cut(s)	958
BstMAI	GTCTC	4 cut(s)	536, 626, 745, 1068
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	4 cut(s)	424, 718, 727, 1087
BstNI	CCWGG	2 cut(s)	156, 327
BstSCI	CCNGG	3 cut(s)	154, 325, 880
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	5 cut(s)	105, 193, 405, 502, 1062
BstV2I	GAAGAC	3 cut(s)	18, 90, 114
BstZ17I	GTATAC	1 cut(s)	1113
BsuRI	GGCC	2 cut(s)	384, 1073
BtsCI	GGATG	4 cut(s)	29, 411, 841, 1009
BtsI	GCAGTG	2 cut(s)	732, 1115
BtsIMutI	CAGTG	6 cut(s)	55, 124, 349, 573, 732, 1115
Cac8I	GCNNGC	2 cut(s)	723, 1092
CfoI	GCGC	1 cut(s)	958
Cfr10I	RCCGGY	2 cut(s)	844, 868
Cfr13I	GGNCC	2 cut(s)	382, 853
Csp6I	GTAC	2 cut(s)	613, 987
CspAI	ACCGGT	1 cut(s)	868
CviAII	CATG	5 cut(s)	113, 304, 481, 502, 589
CviQI	GTAC	2 cut(s)	613, 987
DdeI	CTNAG	6 cut(s)	259, 317, 738, 744, 786, 1065
Eam1104I	CTCTTC	3 cut(s)	33, 743, 1040
EarI	CTCTTC	3 cut(s)	33, 743, 1040
EciI	GGCGGA	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	3 cut(s)	30, 102, 126
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	154, 325
FaeI	CATG	5 cut(s)	116, 307, 484, 505, 592
FalI	AAGNNNNNCTT	2 cut(s)	960, 992
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	5 cut(s)	112, 303, 480, 501, 588
FblI	GTMKAC	1 cut(s)	1112
Fnu4HI	GCNGC	6 cut(s)	94, 182, 254, 419, 491, 1051
FokI	GGATG	4 cut(s)	16, 418, 848, 996
Fsp4HI	GCNGC	6 cut(s)	94, 182, 254, 419, 491, 1051
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	6 cut(s)	94, 182, 254, 419, 491, 1051
GsuI	CTGGAG	1 cut(s)	926
HaeIII	GGCC	2 cut(s)	384, 1073
HapII	CCGG	3 cut(s)	845, 869, 882
HhaI	GCGC	1 cut(s)	958
Hin1II	CATG	5 cut(s)	116, 307, 484, 505, 592
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	4 cut(s)	26, 53, 122, 793
HpaII	CCGG	3 cut(s)	845, 869, 882
HphI	GGTGA	3 cut(s)	248, 460, 590
Hpy166II	GTNNAC	1 cut(s)	1113
Hpy188I	TCNGA	7 cut(s)	10, 82, 106, 127, 364, 523, 1068
Hpy188III	TCNNGA	4 cut(s)	227, 336, 512, 631
Hpy8I	GTNNAC	1 cut(s)	1113
HpyAV	CCTTC	5 cut(s)	217, 425, 463, 651, 1063
HpyCH4III	ACNGT	2 cut(s)	191, 353
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	8 cut(s)	18, 62, 427, 490, 650, 866, 1090, 1120
HpyF10VI	GCNNNNNNNGC	4 cut(s)	424, 718, 727, 1087
HpyF3I	CTNAG	6 cut(s)	259, 317, 738, 744, 786, 1065
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	116, 307, 484, 505, 592
HspAI	GCGC	1 cut(s)	956
LguI	GCTCTTC	1 cut(s)	1040
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	5 cut(s)	105, 193, 405, 502, 1062
LweI	GCATC	2 cut(s)	27, 967
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	342
MseI	TTAA	2 cut(s)	168, 998
MslI	CAYNNNNRTG	2 cut(s)	117, 587
MspI	CCGG	3 cut(s)	845, 869, 882
MspR9I	CCNGG	3 cut(s)	156, 327, 882
Mva1269I	GAATGC	2 cut(s)	885, 1094
MvaI	CCWGG	2 cut(s)	156, 327
MwoI	GCNNNNNNNGC	4 cut(s)	424, 718, 727, 1087
NciI	CCSGG	1 cut(s)	882
NlaIII	CATG	5 cut(s)	116, 307, 484, 505, 592
NlaIV	GGNNCC	3 cut(s)	594, 711, 922
NmuCI	GTSAC	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	1040
PctI	GAATGC	2 cut(s)	885, 1094
PfeI	GAWTC	4 cut(s)	26, 53, 122, 793
PflFI	GACNNNGTC	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	868
PkrI	GCNGC	6 cut(s)	95, 183, 255, 420, 492, 1052
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	154, 325
PspGI	CCWGG	2 cut(s)	154, 325
PspN4I	GGNNCC	3 cut(s)	594, 711, 922
PspPI	GGNCC	2 cut(s)	382, 853
PstI	CTGCAG	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	614, 988
RsaNI	GTAC	2 cut(s)	613, 987
RseI	CAYNNNNRTG	2 cut(s)	117, 587
SapI	GCTCTTC	1 cut(s)	1040
SaqAI	TTAA	2 cut(s)	168, 998
SatI	GCNGC	6 cut(s)	94, 182, 254, 419, 491, 1051
Sau96I	GGNCC	2 cut(s)	382, 853
ScaI	AGTACT	1 cut(s)	614
ScrFI	CCNGG	3 cut(s)	156, 327, 882
SfaNI	GCATC	2 cut(s)	27, 967
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	2 cut(s)	117, 587
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
SsiI	CCGC	3 cut(s)	138, 254, 271
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	154, 325, 880
TaaI	ACNGT	2 cut(s)	191, 353
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	5 cut(s)	228, 267, 294, 630, 961
TaqII	GACCGA	1 cut(s)	769
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	4 cut(s)	26, 53, 122, 793
Tru1I	TTAA	2 cut(s)	168, 998
Tru9I	TTAA	2 cut(s)	168, 998
TscAI	CASTG	6 cut(s)	55, 124, 356, 580, 732, 1122
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	5 cut(s)	93, 181, 418, 490, 1050
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	8 cut(s)	18, 51, 162, 199, 425, 497, 518, 1035
TspRI	CASTG	6 cut(s)	55, 124, 356, 580, 732, 1122
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	853
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	7 cut(s)	128, 141, 283, 365, 505, 800, 1031
XmiI	GTMKAC	1 cut(s)	1112
XspI	CTAG	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.