Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024291

Physical Location & Seq

Genomic Coordinates Reverse (-)

12441034 .. 12442191

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTTTCCGAAGACTGCATCAGTGATTCATCCAATGAAGAGTATTATAGCAGCGATTCATCTGATGAAGACTATGTCAGTGAATCCTCTGCAGATGATAGCAGTTCTTCTGAAGACCATAGCAGCAATCTTTCTGAAGACCATGTCAGTGATTCCGAATTCTATGGCAGAATTTATCAAGAACCTGGCAGTAATTTTAATTCCTTTGAGCAGCTTTACCGTTGTTATCCTGTTTCCTTCATCAACAAGGAACATCTCGAAAGGGGTGATAAAATCGTAATGCCGCCCTCAGCCCTCGACCGCCTAGTGTCAAATTTACAGGTCGATTACCCCATGTTGTTTGAACTCAGCAATCCTGGTGATTCTGGACGAATCGCTCACTGTGGGGTGTCGGAATTTGTCGCTGACGAGGGCCAAATGTATTTACCATACTGGATGATGAAGAAGCTGCTTTTACAAGAAGGCGATATTGTTCGGGTGAAAAACAACAGCCTTGTGAAGGGAACATACATGAAGTTGCAGCCTCACACCATGAATTTTCTTGACATATCAGACCTGAAAGCTGTTTTGGAGACTGCTTTGAGAAGATACTCGTGTTTAGCCACTGGTGACATTATCATGGTTCCTTATAACAATAAGGAGTACTACATTGACGTAATCGAAACAAAGCCTTCCCCAGCAATCTGTATAATTGATACCAACTGCGAGGTTGATTTTGCCCCTCCCCTTGATTATGTGGAGCCTCAAAAGCCAGCAGTGCCATCTATTCAGTCTAAGAAGAGACCAAGAGAAGCCGAAAAGGAAGAAGAACCACCTGAGAAGATTCTGAAATTCAGCCCCTTTACTGGTTCAGTAAGAAGATTGGATGGAAAACCGGCATTGGACCAACCAGTTGCACCGGTTTCCTCTCCCGGCATTCTCAAGCAGAACCAACTGGAGAGTGAGACTGGAACCAAGGGCTCTATGTTATCAACTTCTGCATCAGCGCATCGACCTAATGGAAAGCTTGTGTTTGGTACAAATGGTTTAAGTGCCAACCATCCCACGAATGAAACCCCAAAATTTGTCCCACAGAAGAGCAGCCAAGAGCAGTCTCAGAAGGCCGAAAAGCCAAAGTTGCAAGCATTCACAGGAAAGAAGTATACACTGCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

386

Amino Acids

42.96

Weight (kDa)

4.95

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	69 - 165	1e-35	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	167 - 242	7.7e-34	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024291)

Species	Orthologous Gene IDs
malus_domestica	MD02G1066100.v1.1 MD15G1196800.v1.1
pyrus_communis	pycom15g17580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	630
AccI	GTMKAC	1 cut(s)	1142
AciI	CCGC	2 cut(s)	284, 301
AcsI	RAATTY	7 cut(s)	158, 171, 313, 395, 535, 830, 1061
AcuI	CTGAAG	2 cut(s)	132, 156
AfaI	GTAC	2 cut(s)	644, 1018
AfiI	CCNNNNNNNGG	2 cut(s)	499, 845
AgeI	ACCGGT	1 cut(s)	898
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	2 cut(s)	184, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	4 cut(s)	214, 448, 563, 1006
AluI	AGCT	4 cut(s)	214, 448, 563, 1006
Alw26I	GTCTC	4 cut(s)	566, 775, 938, 1098
AoxI	GGCC	2 cut(s)	412, 1101
ApeKI	GCWGC	6 cut(s)	51, 123, 211, 448, 520, 1080
ApoI	RAATTY	7 cut(s)	158, 171, 313, 395, 535, 830, 1061
AsiGI	ACCGGT	1 cut(s)	898
AspLEI	GCGC	1 cut(s)	988
AspS9I	GGNCC	2 cut(s)	412, 883
AsuC2I	CCSGG	1 cut(s)	912
AsuHPI	GGTGA	4 cut(s)	278, 371, 490, 620
AvaII	GGWCC	1 cut(s)	883
BaeI	ACNNNNGTAYC	2 cut(s)	580, 613
BanII	GRGCYC	1 cut(s)	962
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	4 cut(s)	18, 75, 120, 144
BbvCI	CCTCAGC	1 cut(s)	289
BbvI	GCAGC	6 cut(s)	63, 135, 223, 435, 532, 1092
BccI	CCATC	3 cut(s)	769, 860, 1047
BciT130I	CCWGG	2 cut(s)	186, 357
BcnI	CCSGG	1 cut(s)	912
BcoDI	GTCTC	4 cut(s)	566, 775, 938, 1098
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	7 cut(s)	52, 124, 212, 284, 449, 521, 1081
BlsI	GCNGC	7 cut(s)	53, 125, 213, 285, 450, 522, 1082
BmcAI	AGTACT	1 cut(s)	644
Bme1390I	CCNGG	3 cut(s)	186, 357, 912
Bme18I	GGWCC	1 cut(s)	883
BmgT120I	GGNCC	2 cut(s)	412, 883
BmiI	GGNNCC	3 cut(s)	624, 741, 952
BmrFI	CCNGG	3 cut(s)	186, 357, 912
BmsI	GCATC	3 cut(s)	27, 989, 997
BpiI	GAAGAC	4 cut(s)	18, 75, 120, 144
BpmI	CTGGAG	1 cut(s)	956
Bpu10I	CCTNAGC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	905
BpuMI	CCSGG	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	775
BsaJI	CCNNGG	1 cut(s)	954
BsaWI	WCCGGW	1 cut(s)	898
Bsc4I	CCNNNNNNNGG	2 cut(s)	499, 845
Bse118I	RCCGGY	2 cut(s)	874, 898
Bse1I	ACTGG	6 cut(s)	437, 610, 850, 890, 939, 952
BseBI	CCWGG	2 cut(s)	186, 357
BseDI	CCNNGG	1 cut(s)	954
BseGI	GGATG	4 cut(s)	29, 441, 871, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	499, 845
BseMII	CTCAG	4 cut(s)	303, 361, 807, 1109
BseNI	ACTGG	6 cut(s)	437, 610, 850, 890, 939, 952
BseXI	GCAGC	6 cut(s)	63, 135, 223, 435, 532, 1092
BseYI	CCCAGC	1 cut(s)	676
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	414, 1103
BshTI	ACCGGT	1 cut(s)	898
BsiEI	CGRYCG	1 cut(s)	301
BsiSI	CCGG	3 cut(s)	875, 899, 912
BslFI	GGGAC	1 cut(s)	1052
BslI	CCNNNNNNNGG	2 cut(s)	499, 845
BsmAI	GTCTC	4 cut(s)	566, 775, 938, 1098
BsmFI	GGGAC	1 cut(s)	1052
BsmI	GAATGC	2 cut(s)	915, 1124
BsnI	GGCC	2 cut(s)	414, 1103
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	962
BspACI	CCGC	2 cut(s)	284, 301
BspANI	GGCC	2 cut(s)	414, 1103
BspCNI	CTCAG	4 cut(s)	302, 360, 808, 1108
BspLI	GGNNCC	3 cut(s)	624, 741, 952
BspMAI	CTGCAG	1 cut(s)	94
BspQI	GCTCTTC	1 cut(s)	1070
BspTNI	GGTCTC	1 cut(s)	775
BsrFI	RCCGGY	2 cut(s)	874, 898
BsrI	ACTGG	6 cut(s)	437, 610, 850, 890, 939, 952
BssAI	RCCGGY	2 cut(s)	874, 898
BssECI	CCNNGG	1 cut(s)	954
BssNAI	GTATAC	1 cut(s)	1143
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	954
Bst1107I	GTATAC	1 cut(s)	1143
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	2 cut(s)	186, 357
Bst4CI	ACNGT	2 cut(s)	221, 383
Bst6I	CTCTTC	3 cut(s)	33, 773, 1070
BstC8I	GCNNGC	2 cut(s)	753, 1122
BstDEI	CTNAG	5 cut(s)	289, 347, 774, 816, 1095
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	4 cut(s)	29, 441, 871, 1039
BstHHI	GCGC	1 cut(s)	988
BstMAI	GTCTC	4 cut(s)	566, 775, 938, 1098
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	748, 757, 1117
BstNI	CCWGG	2 cut(s)	186, 357
BstSCI	CCNGG	3 cut(s)	184, 355, 910
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	6 cut(s)	63, 135, 223, 435, 532, 1092
BstV2I	GAAGAC	4 cut(s)	18, 75, 120, 144
BstZ17I	GTATAC	1 cut(s)	1143
BsuRI	GGCC	2 cut(s)	414, 1103
BtsCI	GGATG	4 cut(s)	29, 441, 871, 1039
BtsI	GCAGTG	2 cut(s)	762, 1145
BtsIMutI	CAGTG	7 cut(s)	28, 85, 154, 379, 603, 762, 1145
Cac8I	GCNNGC	2 cut(s)	753, 1122
CfoI	GCGC	1 cut(s)	988
Cfr10I	RCCGGY	2 cut(s)	874, 898
Cfr13I	GGNCC	2 cut(s)	412, 883
Csp6I	GTAC	2 cut(s)	643, 1017
CspAI	ACCGGT	1 cut(s)	898
CviAII	CATG	5 cut(s)	143, 334, 511, 532, 619
CviQI	GTAC	2 cut(s)	643, 1017
DdeI	CTNAG	5 cut(s)	289, 347, 774, 816, 1095
Eam1104I	CTCTTC	3 cut(s)	33, 773, 1070
EarI	CTCTTC	3 cut(s)	33, 773, 1070
Eco130I	CCWWGG	1 cut(s)	954
Eco24I	GRGCYC	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	2 cut(s)	132, 156
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	184, 355
EcoT14I	CCWWGG	1 cut(s)	954
EcoT38I	GRGCYC	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	954
FaeI	CATG	5 cut(s)	146, 337, 514, 535, 622
FaqI	GGGAC	1 cut(s)	1052
FatI	CATG	5 cut(s)	142, 333, 510, 531, 618
FblI	GTMKAC	1 cut(s)	1142
Fnu4HI	GCNGC	7 cut(s)	52, 124, 212, 284, 449, 521, 1081
FokI	GGATG	4 cut(s)	16, 448, 878, 1026
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	7 cut(s)	52, 124, 212, 284, 449, 521, 1081
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	987
GluI	GCNGC	7 cut(s)	52, 124, 212, 284, 449, 521, 1081
GsaI	CCCAGC	1 cut(s)	680
GsuI	CTGGAG	1 cut(s)	956
HaeIII	GGCC	2 cut(s)	414, 1103
HapII	CCGG	3 cut(s)	875, 899, 912
HhaI	GCGC	1 cut(s)	988
Hin1II	CATG	5 cut(s)	146, 337, 514, 535, 622
Hin6I	GCGC	1 cut(s)	986
HinP1I	GCGC	1 cut(s)	986
HindIII	AAGCTT	1 cut(s)	1004
HinfI	GANTC	7 cut(s)	26, 56, 83, 152, 362, 372, 823
HpaII	CCGG	3 cut(s)	875, 899, 912
HphI	GGTGA	4 cut(s)	278, 371, 490, 620
Hpy166II	GTNNAC	1 cut(s)	1143
Hpy188I	TCNGA	9 cut(s)	10, 64, 112, 136, 157, 394, 553, 828, 1098
Hpy188III	TCNNGA	4 cut(s)	179, 257, 366, 542
Hpy8I	GTNNAC	1 cut(s)	1143
HpyAV	CCTTC	5 cut(s)	247, 455, 493, 681, 1093
HpyCH4III	ACNGT	2 cut(s)	221, 383
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	7 cut(s)	18, 92, 520, 896, 980, 1120, 1150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	748, 757, 1117
HpyF3I	CTNAG	5 cut(s)	289, 347, 774, 816, 1095
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	5 cut(s)	146, 337, 514, 535, 622
HspAI	GCGC	1 cut(s)	986
LguI	GCTCTTC	1 cut(s)	1070
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	6 cut(s)	63, 135, 223, 435, 532, 1092
LweI	GCATC	3 cut(s)	27, 989, 997
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	962
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	9 cut(s)	97, 298, 305, 403, 534, 700, 732, 753, 916
MseI	TTAA	2 cut(s)	198, 1028
MslI	CAYNNNNRTG	2 cut(s)	147, 617
MspI	CCGG	3 cut(s)	875, 899, 912
MspR9I	CCNGG	3 cut(s)	186, 357, 912
Mva1269I	GAATGC	2 cut(s)	915, 1124
MvaI	CCWGG	2 cut(s)	186, 357
MwoI	GCNNNNNNNGC	3 cut(s)	748, 757, 1117
NciI	CCSGG	1 cut(s)	912
NlaIII	CATG	5 cut(s)	146, 337, 514, 535, 622
NlaIV	GGNNCC	3 cut(s)	624, 741, 952
NmuCI	GTSAC	1 cut(s)	608
PciSI	GCTCTTC	1 cut(s)	1070
PctI	GAATGC	2 cut(s)	915, 1124
PfeI	GAWTC	7 cut(s)	26, 56, 83, 152, 362, 372, 823
PflFI	GACNNNGTC	2 cut(s)	74, 143
PinAI	ACCGGT	1 cut(s)	898
PkrI	GCNGC	7 cut(s)	53, 125, 213, 285, 450, 522, 1082
PsiI	TTATAA	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	184, 355
PspFI	CCCAGC	1 cut(s)	676
PspGI	CCWGG	2 cut(s)	184, 355
PspN4I	GGNNCC	3 cut(s)	624, 741, 952
PspPI	GGNCC	2 cut(s)	412, 883
PstI	CTGCAG	1 cut(s)	94
PsyI	GACNNNGTC	2 cut(s)	74, 143
RsaI	GTAC	2 cut(s)	644, 1018
RsaNI	GTAC	2 cut(s)	643, 1017
RseI	CAYNNNNRTG	2 cut(s)	147, 617
SapI	GCTCTTC	1 cut(s)	1070
SaqAI	TTAA	2 cut(s)	198, 1028
SatI	GCNGC	7 cut(s)	52, 124, 212, 284, 449, 521, 1081
Sau96I	GGNCC	2 cut(s)	412, 883
ScaI	AGTACT	1 cut(s)	644
ScrFI	CCNGG	3 cut(s)	186, 357, 912
SduI	GDGCHC	1 cut(s)	962
SfaNI	GCATC	3 cut(s)	27, 989, 997
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	883
SmiMI	CAYNNNNRTG	2 cut(s)	147, 617
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
SsiI	CCGC	2 cut(s)	284, 301
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	184, 355, 910
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	2 cut(s)	221, 383
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	5 cut(s)	258, 297, 324, 660, 991
TatI	WGTACW	1 cut(s)	642
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	7 cut(s)	26, 56, 83, 152, 362, 372, 823
Tru1I	TTAA	2 cut(s)	198, 1028
Tru9I	TTAA	2 cut(s)	198, 1028
TscAI	CASTG	7 cut(s)	28, 85, 154, 386, 610, 762, 1152
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	6 cut(s)	51, 123, 211, 448, 520, 1080
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	9 cut(s)	18, 48, 51, 81, 229, 455, 527, 548, 1065
TspRI	CASTG	7 cut(s)	28, 85, 154, 386, 610, 762, 1152
Tth111I	GACNNNGTC	2 cut(s)	74, 143
VpaK11BI	GGWCC	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	7 cut(s)	158, 171, 313, 395, 535, 830, 1061
XmiI	GTMKAC	1 cut(s)	1142
XspI	CTAG	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.