Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0022324

Physical Location & Seq

Genomic Coordinates Forward (+)

9758287 .. 9763122

Gene Structure 4836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1120000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAAATTTTCAATTTGCCAACGTTGCTCTCCTTTCTCCTGCCTTCCACACACTTTCAGACTCTCTCTCGCACGACCTCTTCAAGCTTCAACCAAAAACCCTAGCGATTCTCGTTCCTTTTCGACGAACCCGAATCGAAATCAGGATCTGTTAAGCCCTAATCGCAGCAATCTCACGGCATCGCGGGCTCCGTCCGCTGAAACTATAGCAAAGATTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

75

Amino Acids

8.23

Weight (kDa)

10.3

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022324)

Species	Orthologous Gene IDs
malus_domestica	MD02G1120000.v1.1 MD09G1231300.v1.1 MD14G1168800.v1.1
pyrus_communis	pycom15g18690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	184
AciI	CCGC	2 cut(s)	184, 195
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	12, 83, 90
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	2 cut(s)	184, 195
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	153
BssMI	GATC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 162, 185, 194
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	148
CviJI	RGCY	3 cut(s)	86, 156, 188
CviKI_1	RGCY	3 cut(s)	86, 156, 188
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	190
FaiI	YATR	1 cut(s)	206
FauI	CCCGC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	3 cut(s)	60, 107, 133
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	143
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 162, 185, 194
HpySE526I	ACGT	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	2 cut(s)	52, 128
Lsp1109I	GCAGC	1 cut(s)	177
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	22
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	71
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	2 cut(s)	5, 12
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	1 cut(s)	87
MseI	TTAA	1 cut(s)	152
MspA1I	CMGCKG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	4 cut(s)	24, 162, 185, 194
NdeII	GATC	1 cut(s)	145
NlaIV	GGNNCC	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 188
PfeI	GAWTC	2 cut(s)	107, 133
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp1406I	AACGTT	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	152
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	3 cut(s)	25, 79, 88
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	5, 12
SsiI	CCGC	2 cut(s)	184, 195
SspMI	CTAG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	3 cut(s)	122, 136, 219
TasI	AATT	2 cut(s)	5, 12
TfiI	GAWTC	2 cut(s)	107, 133
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	180
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.