Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0022324

Physical Location & Seq

Genomic Coordinates Forward (+)

13267332 .. 13267846

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTAAAGTCCCTTGTTGGCGAATATGCTGCGGAAACCCATACAACAACGCAACTCCTCGTATTCTCCCCAACCCCAGCTGCAACTTCAAAGCCGCTTGCTTCCACCAAAAACCCTAGCGATTCTCCTTCCTTTTCGACGAAGCCGAATCGAAATCTGGATCTGTTAAGCCCTAATCGCAGCAATCTCACGGCATCGCGAGCTCCGTCCGCTGAAACTATAGCAAAGAATTTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

80

Amino Acids

8.33

Weight (kDa)

9.69

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0022324)

Species	Orthologous Gene IDs
malus_domestica	MD02G1120000.v1.1 MD09G1231300.v1.1 MD14G1168800.v1.1
pyrus_communis	pycom15g18690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	32, 95, 210
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	90
AluBI	AGCT	2 cut(s)	80, 203
AluI	AGCT	2 cut(s)	80, 203
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	29, 80, 180
ApoI	RAATTY	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	16, 67, 192
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	4 cut(s)	30, 81, 95, 181
BlsI	GCNGC	4 cut(s)	31, 82, 96, 182
BmsI	GCATC	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	16, 67, 192
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	160
Bsp68I	TCGCGA	1 cut(s)	199
BspACI	CCGC	3 cut(s)	32, 95, 210
BspFNI	CGCG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	168
BssMI	GATC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	99, 201
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 200, 209
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	16, 67, 192
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	99, 201
CviJI	RGCY	5 cut(s)	80, 94, 145, 171, 203
CviKI_1	RGCY	5 cut(s)	80, 94, 145, 171, 203
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	205
FaiI	YATR	3 cut(s)	27, 42, 221
Fnu4HI	GCNGC	4 cut(s)	30, 81, 95, 181
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	4 cut(s)	30, 81, 95, 181
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	4 cut(s)	30, 81, 95, 181
GsaI	CCCAGC	1 cut(s)	80
HinfI	GANTC	2 cut(s)	122, 148
Hpy188III	TCNNGA	2 cut(s)	158, 198
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 200, 209
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	2 cut(s)	90, 143
Lsp1109I	GCAGC	3 cut(s)	16, 67, 192
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	229
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	2 cut(s)	80, 212
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	177, 200, 209
NdeII	GATC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 203
PfeI	GAWTC	2 cut(s)	122, 148
PkrI	GCNGC	4 cut(s)	31, 82, 96, 182
Psp124BI	GAGCTC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	80
RruI	TCGCGA	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	4 cut(s)	30, 81, 95, 181
Sau3AI	GATC	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	2 cut(s)	82, 205
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	219
SgeI	CNNG	9 cut(s)	26, 71, 89, 110, 129, 170, 202, 210, 212
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	32, 95, 210
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	205
TaqI	TCGA	2 cut(s)	137, 151
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	122, 148
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	3 cut(s)	29, 80, 180
TspGWI	ACGGA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	229
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.