MD09G1231300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0022324
Physical Location & Seq
Forward (+)
28631217 .. 28632297
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1231300.v1.1.491

Sequence Viewer

Length: 363 bp
ATGAACAGTAACTCATTAATGAATTTTTCAATTTACCAACATTGCCCTCCTTTATCCTACCTTCCCTTCTTCTGCGTTCCTCACACAATTAGACTCTCGCCCTCTCGCAAAACCCTTGCGAAACCATCACGAACCAGATCTGAAAAGGGCGTCTCCTCCCACCAATCTCTCTTGTTCTCCAGGTCGTGTTATTCCGGCTCGGGGTCATACGAGAGTGGAGCGCATACTATGCAAACACAGAGAGCAACTTCTTTCCACAAAATGCTATCTTTCCAGTTTCCACAGAGTAGAAAAGCTGTAAACACAGAAATTCCTGCGACGAATGAGATAAGAACACTTGTACAAAATAATATTTTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

10.03

Isoelectric Point (pI)

62.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022324)

Species Orthologous Gene IDs
malus_domestica MD02G1120000.v1.1 MD09G1231300.v1.1 MD14G1168800.v1.1
pyrus_communis pycom15g18690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 22, 309
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 199
ApoI RAATTY 2 cut(s) 22, 309
AseI ATTAAT 1 cut(s) 17
AspLEI GCGC 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 199
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 157
BglII AGATCT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 157
BsmBI CGTCTC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 199
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 340
BsrI ACTGG 1 cut(s) 274
BssMI GATC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 150
BstAPI GCANNNNNTGC 1 cut(s) 229
BstAUI TGTACA 1 cut(s) 340
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 1 cut(s) 140
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
CfoI GCGC 1 cut(s) 223
CseI GACGC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 341
CviJI RGCY 2 cut(s) 198, 296
CviKI_1 RGCY 2 cut(s) 198, 296
CviQI GTAC 1 cut(s) 341
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 157
FaiI YATR 3 cut(s) 208, 225, 230
GlaI GCGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 163
HapII CCGG 1 cut(s) 195
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 71, 76
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 1 cut(s) 221
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 6 cut(s) 148, 166, 193, 208, 287, 327
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 137
MluCI AATT 4 cut(s) 22, 30, 87, 309
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 4 cut(s) 57, 90, 112, 166
MseI TTAA 2 cut(s) 17, 361
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 1 cut(s) 137
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 17, 361
Sau3AI GATC 1 cut(s) 137
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 181
SetI ASST 3 cut(s) 63, 185, 298
Sse9I AATT 4 cut(s) 22, 30, 87, 309
SspI AATATT 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 8
TasI AATT 4 cut(s) 22, 30, 87, 309
TatI WGTACW 1 cut(s) 340
Tru1I TTAA 2 cut(s) 17, 361
Tru9I TTAA 2 cut(s) 17, 361
TspDTI ATGAA 2 cut(s) 17, 35
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 2 cut(s) 22, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.