Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009093

Physical Location & Seq

Genomic Coordinates Reverse (-)

12247491 .. 12252579

Gene Structure 5089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1148900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGTGGCGCTGCGTTTCTCGTGGGCTCGGCGTTTCTTCCTCCAAGAGATCCGCCTCCACCGATTCTCTTAGATCTCACTTCTCCAGGCTCTTCTCCTCCGAATCCGCTACAGGACGTTCTCCGTACACCGTGGTGGACCATACTTATGATGCAGTGGTCGTCGGGGCAGGCGGTGCGGGGCTGAGAGCAGCAATTGGACTTTCGGAGCATGGATTTAACACTGCTTGCATTACTAAGCTTTTTCCAACTCGTTCCCACACTGTTGCAGCCCAGGGTGGTATAAATGCTGCATTAGGAAATATGACTGAGGATGACTGGAGGTGGCATATGTATGACACAGTCAAGGGAAGCGATTGGCTGGGTGATCAGGATGCCATCCAGTATATGTGTAGAGAGGCTCCGAAAGCTGTGATTGAACTTGAAAATTATGGATTGCCATTTTCTCGAACTGAAGATGGAAGAATATATCAACGTGCATTTGGTGGTCAAAGTCTTGACTTCGGAAAAGGTGGACAGGCATACCGATGTGCTTGTGCTGCTGACAGAACTGGGCATGCTCTATTGCATACTCTCTATGGACAAGCAATGAAACATAATACACAATTTTTTGTTGAATACTTTGCTTTGGATCTTTTAATGGACAGTGAGGGGGGCTGCCAAGGAGTCATTGCATTAAATATGGAGGATGGAACTCTACATCGTTTCCAAGCGTCATCAACAATTTTGGCCACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACATACCTGCACTGGAGATGGTAATGCAATGGTTGCACGTGCTGGCCTCCCACTTCAGGATTTGGAGTTTGTGCAGTTTCACCCTACTGGTATATATGGTGCTGGATGCCTCATTACTGAAGGATCACGAGGGGAAGGTGGTATCCTGAGGAATAGTGAAGGTGAGCGATTTATGGAACGATATGCCCCTACAGCGAAAGATCTTGCTTCTAGGGATGTTGTGTCGAGATCTATGACCATGGAAATCCGGGAGGGTCGTGGTGTAGGACCTTTGAAGGACCACATCTATCTCCACTTGAATCATTTGCCCCCAGATGTACTCAAGGAGAGGCTTCCTGGTATCTCCGAAACTGCTGCCATTTTTGCTGGTGTGGATGTTACAAAGGAGCCTATTCCTGTCTTACCTACTGTGCACTATAATATGGGTGGAATTCCAACAAATTACCACGGAGAGGTAGTTACCATTAAAGGTGATGATCCAGATGTAACAATTCCTGGTTTAATGGCAGCTGGGGAGGCAGCCTGTGCATCTGTTCACGGTGCCAATCGGCTTGGTGCAAATTCACTCCTTGACATTGTTGTTTTTGGTCGAGCATGTGCAAATAGAGTTGCAGAGATCCATAAACCAGGCAAGCTTATTTTTATGCTAATGAAGATAAAATCAATAATAATATATAAACAAAAGCCCCTGGAAAAGGATGCTGGAGAGAAGACCATTGCATGGTTGGACAAAATAAGGAATTCAAATGGCTCATTACCAACTTCAAAAATCCGGTTGAATATGCAACGAATAATGCAAAATAATGCTGCTGTGTTCCGCACACAAGAAACATTAGAAGAAGGTGTTCAGTTGATTGACAAGGCATGGGAGAGCTTTCATGATGTTCAATTGAAGGATCGGAGTTTGATATGGAACTCCGACTTGATAGAGACTATAGAGCTGGAAAACCTTTTGATAAATGCCTCTATCACCATGCATTCCGCTGAAGCGAGGAAAGAAAGCAGAGGAGCACATGCTCGTGAAGATTTCACGACAAGGGATGATGAGAAATGGATGAAACATACACTGGGATACTGGGAAAATAAGAAGGTCCGACTAGACTACAGACCGGTTCACATGAACACATTAGATGATGAAATCGAGACATTCCCACCTAAAGCTCGTGTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009061 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0016999 GO:0017076 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0019866 GO:0022900 GO:0022904 GO:0030312 GO:0030554 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034641 GO:0035639 GO:0036094 GO:0042773 GO:0042775 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0046872 GO:0046914 GO:0050897 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0071944 GO:0072350 GO:0072521 GO:0097159 GO:0097367 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

648

Amino Acids

71.33

Weight (kDa)

6.38

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_2	PF00890	50 - 446	1.9e-125	FAD binding domain
Succ_DH_flav_C	PF02910	515 - 647	1.2e-47	Fumarate reductase flavoprotein C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18450 AT5G66760
fragaria_vesca	FvH4_1g13410 FvH4_1g13410 FvH4_1g13410
malus_domestica	MD02G1148900.v1.1 MD15G1263800.v1.1
prunus_persica	Prupe.7G153600_v2.0.a1 Prupe.7G153600_v2.0.a1 Prupe.7G153600_v2.0.a1
pyrus_communis	pycom02g11730 pycom15g22970
rosa_chinensis	RchiOBHm_Chr2g0101771
rosa_laevigata	RLG00000017100
rosa_multiflora	Rmu_sc0003504.1_g000004
rosa_roxburghii	Rroxscaffold_2G00141040
rosa_rugosa	Rorug02G0101900
rosa_samantha	Rh2AG149200 Rh2BG154800 Rh2CG155100 Rh2DG155000
rosa_wichuraiana	Rw2G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	1310
AccB7I	CCANNNNNTGG	1 cut(s)	1491
AccI	GTMKAC	1 cut(s)	1938
AciI	CCGC	6 cut(s)	51, 105, 171, 176, 1588, 1752
AclWI	GGATC	6 cut(s)	42, 636, 901, 1241, 1381, 1674
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	3 cut(s)	1200, 1330, 1510
AcuI	CTGAAG	4 cut(s)	471, 809, 909, 1776
AcvI	CACGTG	1 cut(s)	809
AfaI	GTAC	2 cut(s)	125, 1089
AfiI	CCNNNNNNNGG	4 cut(s)	826, 1222, 1465, 1491
AgeI	ACCGGT	1 cut(s)	1879
AjnI	CCWGG	6 cut(s)	83, 270, 1105, 1264, 1396, 1458
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	7 cut(s)	238, 407, 1280, 1405, 1644, 1711, 1931
AluI	AGCT	7 cut(s)	238, 407, 1280, 1405, 1644, 1711, 1931
Alw21I	GWGCWC	2 cut(s)	1185, 1783
Alw26I	GTCTC	2 cut(s)	1694, 1907
Alw44I	GTGCAC	1 cut(s)	1181
AlwI	GGATC	6 cut(s)	42, 636, 901, 1241, 1381, 1674
AoxI	GGCC	2 cut(s)	726, 814
ApaLI	GTGCAC	1 cut(s)	1181
ApoI	RAATTY	3 cut(s)	1200, 1330, 1510
AsiGI	ACCGGT	1 cut(s)	1879
Asp700I	GAANNNNTTC	1 cut(s)	1614
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	4 cut(s)	136, 1037, 1048, 1861
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	5 cut(s)	374, 842, 944, 1253, 1732
AvaII	GGWCC	4 cut(s)	136, 1037, 1048, 1861
AxyI	CCTNAGG	1 cut(s)	917
BaeGI	GKGCMC	1 cut(s)	1185
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	1310
BanII	GRGCYC	1 cut(s)	27
BauI	CACGAG	4 cut(s)	18, 897, 1788, 1932
BbrPI	CACGTG	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	1487
Bbv12I	GWGCWC	2 cut(s)	1185, 1783
BbvCI	CCTCAGC	1 cut(s)	766
BbvI	GCAGC	9 cut(s)	200, 274, 278, 523, 641, 1111, 1289, 1301, 1564
BccI	CCATC	4 cut(s)	383, 449, 680, 782
BcgI	CGANNNNNNTGC	2 cut(s)	1106, 1140
BciT130I	CCWGG	6 cut(s)	85, 272, 1107, 1266, 1398, 1460
BciVI	GTATCC	2 cut(s)	923, 1835
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	2 cut(s)	1694, 1907
BfaI	CTAG	2 cut(s)	981, 1868
BfmI	CTRYAG	4 cut(s)	108, 960, 1704, 1873
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	785
BfuI	GTATCC	2 cut(s)	923, 1835
BglII	AGATCT	3 cut(s)	71, 970, 998
Bme1390I	CCNGG	7 cut(s)	85, 272, 1019, 1107, 1266, 1398, 1460
Bme18I	GGWCC	4 cut(s)	136, 1037, 1048, 1861
BmgT120I	GGNCC	4 cut(s)	136, 1037, 1048, 1861
BmiI	GGNNCC	3 cut(s)	399, 1158, 1312
BmrFI	CCNGG	7 cut(s)	85, 272, 1019, 1107, 1266, 1398, 1460
BmrI	ACTGGG	3 cut(s)	558, 1847, 1855
BmsI	GCATC	5 cut(s)	139, 361, 866, 1307, 1459
BmuI	ACTGGG	3 cut(s)	558, 1847, 1855
BpiI	GAAGAC	1 cut(s)	1487
BpmI	CTGGAG	4 cut(s)	67, 337, 804, 1494
Bpu10I	CCTNAGC	1 cut(s)	766
BpuEI	CTTGAG	1 cut(s)	1076
BpuMI	CCSGG	1 cut(s)	1019
BsaAI	YACGTR	1 cut(s)	809
BsaJI	CCNNGG	7 cut(s)	129, 270, 271, 658, 1008, 1216, 1458
BsaWI	WCCGGW	2 cut(s)	1542, 1879
BsaXI	ACNNNNNCTCC	2 cut(s)	1212, 1242
Bsc4I	CCNNNNNNNGG	4 cut(s)	826, 1222, 1465, 1491
Bse118I	RCCGGY	1 cut(s)	1879
Bse1I	ACTGG	7 cut(s)	320, 379, 553, 787, 862, 1842, 1850
Bse21I	CCTNAGG	1 cut(s)	917
Bse3DI	GCAATG	4 cut(s)	591, 666, 804, 1485
BseBI	CCWGG	6 cut(s)	85, 272, 1107, 1266, 1398, 1460
BseDI	CCNNGG	7 cut(s)	129, 270, 271, 658, 1008, 1216, 1458
BseLI	CCNNNNNNNGG	4 cut(s)	826, 1222, 1465, 1491
BseMI	GCAATG	4 cut(s)	591, 666, 804, 1485
BseMII	CTCAG	4 cut(s)	173, 297, 780, 908
BseNI	ACTGG	7 cut(s)	320, 379, 553, 787, 862, 1842, 1850
BseRI	GAGGAG	2 cut(s)	85, 1791
BseSI	GKGCMC	1 cut(s)	1185
BseXI	GCAGC	9 cut(s)	200, 274, 278, 523, 641, 1111, 1289, 1301, 1564
BseYI	CCCAGC	2 cut(s)	358, 1280
BsgI	GTGCAG	2 cut(s)	763, 863
BshFI	GGCC	2 cut(s)	728, 816
BshNI	GGYRCC	1 cut(s)	1310
BshTI	ACCGGT	1 cut(s)	1879
BsiHKAI	GWGCWC	2 cut(s)	1185, 1783
BsiSI	CCGG	3 cut(s)	1018, 1543, 1880
BslI	CCNNNNNNNGG	4 cut(s)	826, 1222, 1465, 1491
BsmAI	GTCTC	2 cut(s)	1694, 1907
BsmI	GAATGC	1 cut(s)	1747
BsnI	GGCC	2 cut(s)	728, 816
Bsp1286I	GDGCHC	3 cut(s)	27, 1185, 1783
Bsp19I	CCATGG	1 cut(s)	1008
BspACI	CCGC	6 cut(s)	51, 105, 171, 176, 1588, 1752
BspANI	GGCC	2 cut(s)	728, 816
BspCNI	CTCAG	4 cut(s)	174, 298, 779, 909
BspHI	TCATGA	1 cut(s)	1648
BspLI	GGNNCC	3 cut(s)	399, 1158, 1312
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	6 cut(s)	42, 636, 901, 1241, 1381, 1674
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	1310
BsrDI	GCAATG	4 cut(s)	591, 666, 804, 1485
BsrFI	RCCGGY	1 cut(s)	1879
BsrI	ACTGG	7 cut(s)	320, 379, 553, 787, 862, 1842, 1850
BssAI	RCCGGY	1 cut(s)	1879
BssECI	CCNNGG	7 cut(s)	129, 270, 271, 658, 1008, 1216, 1458
BssSI	CACGAG	4 cut(s)	18, 897, 1788, 1932
BssT1I	CCWWGG	2 cut(s)	658, 1008
Bst2BI	CACGAG	4 cut(s)	18, 897, 1788, 1932
Bst2UI	CCWGG	6 cut(s)	85, 272, 1107, 1266, 1398, 1460
Bst4CI	ACNGT	6 cut(s)	130, 262, 340, 644, 1180, 1310
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	3 cut(s)	173, 803, 1295
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	5 cut(s)	169, 226, 555, 814, 1403
BstDEI	CTNAG	6 cut(s)	68, 182, 234, 306, 766, 917
BstDSI	CCRYGG	3 cut(s)	129, 1008, 1216
BstENI	CCTNNNNNAGG	1 cut(s)	1463
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstMAI	GTCTC	2 cut(s)	1694, 1907
BstMWI	GCNNNNNNNGC	9 cut(s)	173, 404, 536, 767, 803, 962, 1133, 1286, 1295
BstNI	CCWGG	6 cut(s)	85, 272, 1107, 1266, 1398, 1460
BstNSI	RCATGY	3 cut(s)	557, 1368, 1787
BstSCI	CCNGG	7 cut(s)	83, 270, 1017, 1105, 1264, 1396, 1458
BstSFI	CTRYAG	4 cut(s)	108, 960, 1704, 1873
BstSLI	GKGCMC	1 cut(s)	1185
BstV1I	GCAGC	9 cut(s)	200, 274, 278, 523, 641, 1111, 1289, 1301, 1564
BstV2I	GAAGAC	1 cut(s)	1487
BstX2I	RGATCY	6 cut(s)	47, 71, 628, 970, 998, 1386
BstYI	RGATCY	6 cut(s)	47, 71, 628, 970, 998, 1386
Bsu36I	CCTNAGG	1 cut(s)	917
BsuI	GTATCC	2 cut(s)	923, 1835
BsuRI	GGCC	2 cut(s)	728, 816
BtgI	CCRYGG	3 cut(s)	129, 1008, 1216
BtsI	GCAGTG	2 cut(s)	159, 219
BtsIMutI	CAGTG	6 cut(s)	159, 219, 258, 649, 780, 1835
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	5 cut(s)	169, 226, 555, 814, 1403
CciI	TCATGA	1 cut(s)	1648
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	1879
Cfr13I	GGNCC	4 cut(s)	136, 1037, 1048, 1861
CseI	GACGC	1 cut(s)	699
Csp6I	GTAC	2 cut(s)	124, 1088
CspAI	ACCGGT	1 cut(s)	1879
CviQI	GTAC	2 cut(s)	124, 1088
DdeI	CTNAG	6 cut(s)	68, 182, 234, 306, 766, 917
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	658, 1008
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	4 cut(s)	136, 1037, 1048, 1861
Eco57I	CTGAAG	4 cut(s)	471, 809, 909, 1776
Eco72I	CACGTG	1 cut(s)	809
Eco81I	CCTNAGG	1 cut(s)	917
EcoNI	CCTNNNNNAGG	1 cut(s)	1463
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoRI	GAATTC	2 cut(s)	1200, 1510
EcoRII	CCWGG	6 cut(s)	83, 270, 1105, 1264, 1396, 1458
EcoT14I	CCWWGG	2 cut(s)	658, 1008
EcoT22I	ATGCAT	1 cut(s)	1749
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	2 cut(s)	658, 1008
FauI	CCCGC	1 cut(s)	169
FauNDI	CATATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	1938
FriOI	GRGCYC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	981, 1868
GlaI	GCGC	1 cut(s)	8
GsaI	CCCAGC	2 cut(s)	362, 1284
GsuI	CTGGAG	4 cut(s)	67, 337, 804, 1494
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	728, 816
HapII	CCGG	3 cut(s)	1018, 1543, 1880
HgaI	GACGC	1 cut(s)	699
HhaI	GCGC	1 cut(s)	9
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	2 cut(s)	236, 1403
HinfI	GANTC	4 cut(s)	62, 101, 663, 1069
HpaII	CCGG	3 cut(s)	1018, 1543, 1880
HphI	GGTGA	5 cut(s)	374, 842, 944, 1253, 1732
Hpy166II	GTNNAC	7 cut(s)	126, 136, 512, 1183, 1306, 1885, 1939
Hpy188I	TCNGA	8 cut(s)	100, 205, 402, 503, 1117, 1671, 1690, 1865
Hpy8I	GTNNAC	7 cut(s)	126, 136, 512, 1183, 1306, 1885, 1939
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	7 cut(s)	884, 899, 923, 1039, 1604, 1657, 1852
HpyCH4III	ACNGT	6 cut(s)	130, 262, 340, 644, 1180, 1310
HpyCH4IV	ACGT	3 cut(s)	115, 472, 808
HpyF10VI	GCNNNNNNNGC	9 cut(s)	173, 404, 536, 767, 803, 962, 1133, 1286, 1295
HpyF3I	CTNAG	6 cut(s)	68, 182, 234, 306, 766, 917
HpySE526I	ACGT	3 cut(s)	115, 472, 808
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	4 cut(s)	205, 403, 1156, 1778
Lsp1109I	GCAGC	9 cut(s)	200, 274, 278, 523, 641, 1111, 1289, 1301, 1564
LweI	GCATC	5 cut(s)	139, 361, 866, 1307, 1459
MaeI	CTAG	2 cut(s)	981, 1868
MaeII	ACGT	3 cut(s)	115, 472, 808
MaeIII	GTNAC	3 cut(s)	1147, 1228, 1255
MboII	GAAGA	8 cut(s)	27, 82, 464, 471, 1435, 1492, 1619, 1805
MfeI	CAATTG	2 cut(s)	192, 1658
MflI	RGATCY	6 cut(s)	47, 71, 628, 970, 998, 1386
MhlI	GDGCHC	3 cut(s)	27, 1185, 1783
MlsI	TGGCCA	1 cut(s)	728
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	1 cut(s)	672
MmeI	TCCRAC	5 cut(s)	269, 1229, 1476, 1713, 1888
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	1749
MroXI	GAANNNNTTC	1 cut(s)	1614
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	5 cut(s)	216, 635, 674, 1236, 1271
MslI	CAYNNNNRTG	5 cut(s)	131, 144, 330, 523, 1788
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	2 cut(s)	1280, 1754
MspI	CCGG	3 cut(s)	1018, 1543, 1880
MspR9I	CCNGG	7 cut(s)	85, 272, 1019, 1107, 1266, 1398, 1460
MunI	CAATTG	2 cut(s)	192, 1658
Mva1269I	GAATGC	1 cut(s)	1747
MvaI	CCWGG	6 cut(s)	85, 272, 1107, 1266, 1398, 1460
MwoI	GCNNNNNNNGC	9 cut(s)	173, 404, 536, 767, 803, 962, 1133, 1286, 1295
NciI	CCSGG	1 cut(s)	1019
NcoI	CCATGG	1 cut(s)	1008
NdeI	CATATG	1 cut(s)	327
NlaIV	GGNNCC	3 cut(s)	399, 1158, 1312
NmeAIII	GCCGAG	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	1749
NspI	RCATGY	3 cut(s)	557, 1368, 1787
OliI	CACNNNNGTG	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	1648
PasI	CCCWGGG	1 cut(s)	271
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	1747
PdmI	GAANNNNTTC	1 cut(s)	1614
PfeI	GAWTC	3 cut(s)	62, 101, 1069
PflFI	GACNNNGTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	1491
PfoI	TCCNGGA	1 cut(s)	1017
PinAI	ACCGGT	1 cut(s)	1879
PleI	GAGTC	1 cut(s)	671
PmaCI	CACGTG	1 cut(s)	809
PmlI	CACGTG	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	809
PpuMI	RGGWCCY	1 cut(s)	1037
Psp5II	RGGWCCY	1 cut(s)	1037
Psp6I	CCWGG	6 cut(s)	83, 270, 1105, 1264, 1396, 1458
PspCI	CACGTG	1 cut(s)	809
PspFI	CCCAGC	2 cut(s)	358, 1280
PspGI	CCWGG	6 cut(s)	83, 270, 1105, 1264, 1396, 1458
PspN4I	GGNNCC	3 cut(s)	399, 1158, 1312
PspPI	GGNCC	4 cut(s)	136, 1037, 1048, 1861
PspPPI	RGGWCCY	1 cut(s)	1037
PsuI	RGATCY	6 cut(s)	47, 71, 628, 970, 998, 1386
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	1280
RsaI	GTAC	2 cut(s)	125, 1089
RsaNI	GTAC	2 cut(s)	124, 1088
RseI	CAYNNNNRTG	5 cut(s)	131, 144, 330, 523, 1788
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	5 cut(s)	216, 635, 674, 1236, 1271
Sau96I	GGNCC	4 cut(s)	136, 1037, 1048, 1861
SchI	GAGTC	1 cut(s)	672
ScrFI	CCNGG	7 cut(s)	85, 272, 1019, 1107, 1266, 1398, 1460
SduI	GDGCHC	3 cut(s)	27, 1185, 1783
SfaNI	GCATC	5 cut(s)	139, 361, 866, 1307, 1459
SfcI	CTRYAG	4 cut(s)	108, 960, 1704, 1873
SinI	GGWCC	4 cut(s)	136, 1037, 1048, 1861
SmiMI	CAYNNNNRTG	5 cut(s)	131, 144, 330, 523, 1788
SmlI	CTYRAG	1 cut(s)	1091
SmoI	CTYRAG	1 cut(s)	1091
SphI	GCATGC	1 cut(s)	557
SsiI	CCGC	6 cut(s)	51, 105, 171, 176, 1588, 1752
SspMI	CTAG	2 cut(s)	981, 1868
StyD4I	CCNGG	7 cut(s)	83, 270, 1017, 1105, 1264, 1396, 1458
StyI	CCWWGG	2 cut(s)	658, 1008
TaaI	ACNGT	6 cut(s)	130, 262, 340, 644, 1180, 1310
TaiI	ACGT	3 cut(s)	118, 475, 811
TaqI	TCGA	4 cut(s)	445, 995, 1360, 1911
TatI	WGTACW	1 cut(s)	1087
TfiI	GAWTC	3 cut(s)	62, 101, 1069
Tru1I	TTAA	5 cut(s)	216, 635, 674, 1236, 1271
Tru9I	TTAA	5 cut(s)	216, 635, 674, 1236, 1271
TscAI	CASTG	6 cut(s)	159, 226, 265, 649, 787, 1842
TspDTI	ATGAA	6 cut(s)	602, 1436, 1637, 1841, 1904, 1920
TspGWI	ACGGA	2 cut(s)	111, 1233
TspRI	CASTG	6 cut(s)	159, 226, 265, 649, 787, 1842
Tth111I	GACNNNGTC	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	1491
VneI	GTGCAC	1 cut(s)	1181
VpaK11BI	GGWCC	4 cut(s)	136, 1037, 1048, 1861
XagI	CCTNNNNNAGG	1 cut(s)	1463
XapI	RAATTY	3 cut(s)	1200, 1330, 1510
XceI	RCATGY	3 cut(s)	557, 1368, 1787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1492
XmiI	GTMKAC	1 cut(s)	1938
XmnI	GAANNNNTTC	1 cut(s)	1614
XspI	CTAG	2 cut(s)	981, 1868
Zsp2I	ATGCAT	1 cut(s)	1749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.