Rh2CG155100

Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
13464479 .. 13470256
5778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG155100.1

Sequence Viewer

Length: 1401 bp
ATGTGTAGAGAGGCTCCAAAAGCTGTGATTGAACTTGAAAATTATGGGTTACCCTTTTCTCGGACTGAAGAAGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCCTTGACTTTGGAAAAGGTGGACAGGCATACCGTTGTGCTTGCGCTGCCGACAGAACTGGGCATGCTCTTTTGCATACTCTCTATGGACAAGCTATGAGGCATAATACACAGTTTTTTGTCGAATATTTTGCGCTGGATCTTATAATGAACAGTGACGGGAGCTGTCAAGGAGTTATTGCATTAAACATGGAGGATGGGACATTGCATCGGTTCCAAGCTTCATCGACAATATTGGCCACGGGGGGTTATGGTAGAGCATACTTCTCTGCAACCTCGGCACATACCTGCACTGGAGATGGCAATGCCATGGTGGCACGTGCTGGGCTCCCACTTCAGGATTTGGAGTTTGTGCAGTTTCACCCTACTGGTATATATGGAGCTGGATGCCTCATTACTGAAGGATCACGAGGGGAAGGTGGTATCCTTAGAAACAGTGAAGGTGAGCGATTTATGGAACGATATGCCCCAACAGCAAAAGATCTTGCTTCTAGAGATGTTGTGTCAAGATCCATGACTATGGAAATCCGGGAGGGTCGTGGTGTAGGACCTTTGAAGGACCATATCTATCTCCACTTGAATCATTTGCCCCCAGATGTACTAAAGGAGAGGCTTCCTGGTATCTCTGAAACTGCTGCCATTTTTGCTGGCGTTGATGTCACAAAAGAGCCTATTCCTGTGTTACCCACTGTACACTACAATATGGGTGGAATTCCAACCAATTACCACGGAGAGGTAGTTACCATTAAAGGTGATAATGCAGATGCAGTAATTCCTGGGTTAATGGCAGCTGGGGAGGCAGCCTGTGCATCTGTTCATGGTGCTAATCGTCTCGGTGCAAATTCACTCCTTGACATTGTTGTTTTTGGCCGAGCATGTGCAAATAGAGTTGCAGAGCTCAGTAAACCAGGGGAGAAACAAAAGCCTCTGGAAAAGGATGCTGGCGAGAAGACCATTGCTTGGTTGGACAAATTGAGGAATTCAAATGGCTCACTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAATAATGCAAAATAATGCTGCTGTGTTCCGCACACAAGAGACATTAGTAGAAGGTTCTGAGTTGATCGACAAGGCATGGGAGAGTTTTAATGATGTTCAAGTGAAGGATCGAACTTTGATATGGAACTCTGACTTGATTGAGACTATCGAGTTAGAAAACCTTTTGATAAATGCCTGTATCACCATGCATTCTGCTGAAGCCAGGAAAGAGAGCCGAGGAGCACATGCTCGTGAAGATTTCACGGTTAGTCCTGTTTGTTTTTGTTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

50.74

Weight (kDa)

5.9

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_2 PF00890 1 - 318 4.2e-93 FAD binding domain
Succ_DH_flav_C PF02910 373 - 459 7.7e-30 Fumarate reductase flavoprotein C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 1065
AciI CCGC 1 cut(s) 1162
AclWI GGATC 4 cut(s) 252, 517, 609, 1248
AcoI YGGCCR 2 cut(s) 342, 973
AcsI RAATTY 4 cut(s) 816, 946, 1084, 1113
AcuI CTGAAG 4 cut(s) 87, 425, 525, 1350
AcvI CACGTG 1 cut(s) 425
AfaI GTAC 2 cut(s) 705, 798
AfiI CCNNNNNNNGG 4 cut(s) 60, 442, 838, 1065
AgsI TTSAA 8 cut(s) 32, 38, 661, 685, 1089, 1110, 1123, 1232
AjnI CCWGG 4 cut(s) 721, 880, 1012, 1334
AluBI AGCT 7 cut(s) 23, 200, 270, 326, 488, 896, 1003
AluI AGCT 7 cut(s) 23, 200, 270, 326, 488, 896, 1003
Alw21I GWGCWC 2 cut(s) 1005, 1357
Alw26I GTCTC 3 cut(s) 941, 1166, 1268
AlwI GGATC 4 cut(s) 252, 517, 609, 1248
AoxI GGCC 2 cut(s) 342, 973
ApeKI GCWGC 5 cut(s) 152, 740, 893, 905, 1151
ApoI RAATTY 4 cut(s) 816, 946, 1084, 1113
AspLEI GCGC 2 cut(s) 152, 241
AspS9I GGNCC 2 cut(s) 653, 664
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 4 cut(s) 458, 560, 869, 1306
AvaII GGWCC 2 cut(s) 653, 664
BalI TGGCCA 1 cut(s) 344
BanII GRGCYC 2 cut(s) 435, 1005
BauI CACGAG 2 cut(s) 513, 1362
BbrPI CACGTG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 1005, 1357
BbvI GCAGC 5 cut(s) 139, 727, 905, 917, 1138
BccI CCATC 2 cut(s) 296, 398
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 4 cut(s) 723, 882, 1014, 1336
BciVI GTATCC 1 cut(s) 539
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 3 cut(s) 941, 1166, 1268
BfaI CTAG 1 cut(s) 597
BfuAI ACCTGC 1 cut(s) 401
BfuI GTATCC 1 cut(s) 539
BglI GCCNNNNNGGC 1 cut(s) 419
BglII AGATCT 1 cut(s) 586
BisI GCNGC 5 cut(s) 153, 741, 894, 906, 1152
BlsI GCNGC 5 cut(s) 154, 742, 895, 907, 1153
Bme1390I CCNGG 5 cut(s) 635, 723, 882, 1014, 1336
Bme18I GGWCC 2 cut(s) 653, 664
BmgT120I GGNCC 2 cut(s) 653, 664
BmiI GGNNCC 3 cut(s) 15, 320, 434
BmrFI CCNGG 5 cut(s) 635, 723, 882, 1014, 1336
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 5 cut(s) 322, 482, 859, 923, 1033
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 1061
BpmI CTGGAG 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 635
BsaAI YACGTR 1 cut(s) 425
BsaJI CCNNGG 7 cut(s) 345, 381, 414, 832, 881, 1013, 1348
BsaXI ACNNNNNCTCC 2 cut(s) 828, 858
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 442, 838, 1065
Bse1I ACTGG 3 cut(s) 169, 403, 478
Bse3DI GCAATG 3 cut(s) 308, 415, 1059
BseBI CCWGG 4 cut(s) 723, 882, 1014, 1336
BseDI CCNNGG 7 cut(s) 345, 381, 414, 832, 881, 1013, 1348
BseGI GGATG 3 cut(s) 307, 497, 1048
BseLI CCNNNNNNNGG 4 cut(s) 60, 442, 838, 1065
BseMI GCAATG 3 cut(s) 308, 415, 1059
BseMII CTCAG 2 cut(s) 1018, 1182
BseNI ACTGG 3 cut(s) 169, 403, 478
BseRI GAGGAG 1 cut(s) 1365
BseXI GCAGC 5 cut(s) 139, 727, 905, 917, 1138
BseYI CCCAGC 2 cut(s) 428, 896
BsgI GTGCAG 2 cut(s) 379, 479
BshFI GGCC 2 cut(s) 344, 975
BsiHKAI GWGCWC 2 cut(s) 1005, 1357
BsiSI CCGG 1 cut(s) 634
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 4 cut(s) 60, 442, 838, 1065
BsmAI GTCTC 3 cut(s) 941, 1166, 1268
BsmBI CGTCTC 1 cut(s) 941
BsmFI GGGAC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 1321
BsnI GGCC 2 cut(s) 344, 975
Bsp1286I GDGCHC 3 cut(s) 435, 1005, 1357
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 1 cut(s) 1162
BspANI GGCC 2 cut(s) 344, 975
BspCNI CTCAG 2 cut(s) 1017, 1183
BspLI GGNNCC 3 cut(s) 15, 320, 434
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 4 cut(s) 252, 517, 609, 1248
BsrDI GCAATG 3 cut(s) 308, 415, 1059
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 3 cut(s) 169, 403, 478
BssECI CCNNGG 7 cut(s) 345, 381, 414, 832, 881, 1013, 1348
BssMI GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
BssSI CACGAG 2 cut(s) 513, 1362
BssT1I CCWWGG 1 cut(s) 414
Bst2BI CACGAG 2 cut(s) 513, 1362
Bst2UI CCWGG 4 cut(s) 723, 882, 1014, 1336
Bst4CI ACNGT 6 cut(s) 140, 219, 260, 542, 796, 1378
BstAPI GCANNNNNTGC 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 796
BstBAI YACGTR 1 cut(s) 425
BstC8I GCNNGC 5 cut(s) 90, 148, 171, 754, 1048
BstDEI CTNAG 3 cut(s) 533, 1004, 1191
BstDSI CCRYGG 3 cut(s) 345, 414, 832
BstEII GGTNACC 1 cut(s) 48
BstF5I GGATG 3 cut(s) 307, 497, 1048
BstHHI GCGC 2 cut(s) 152, 241
BstKTI GATC 6 cut(s) 247, 512, 589, 617, 1200, 1243
BstMAI GTCTC 3 cut(s) 941, 1166, 1268
BstMBI GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
BstMWI GCNNNNNNNGC 8 cut(s) 20, 152, 383, 419, 578, 749, 902, 911
BstNI CCWGG 4 cut(s) 723, 882, 1014, 1336
BstNSI RCATGY 3 cut(s) 173, 984, 1361
BstPI GGTNACC 1 cut(s) 48
BstSCI CCNGG 5 cut(s) 633, 721, 880, 1012, 1334
BstV1I GCAGC 5 cut(s) 139, 727, 905, 917, 1138
BstV2I GAAGAC 1 cut(s) 1061
BstX2I RGATCY 3 cut(s) 244, 586, 614
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 3 cut(s) 244, 586, 614
BsuI GTATCC 1 cut(s) 539
BsuRI GGCC 2 cut(s) 344, 975
BtgI CCRYGG 3 cut(s) 345, 414, 832
BtsCI GGATG 3 cut(s) 307, 497, 1048
BtsI GCAGTG 1 cut(s) 1097
BtsIMutI CAGTG 5 cut(s) 265, 396, 547, 792, 1097
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 5 cut(s) 90, 148, 171, 754, 1048
CfoI GCGC 2 cut(s) 152, 241
Cfr13I GGNCC 2 cut(s) 653, 664
Csp6I GTAC 2 cut(s) 704, 797
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 9 cut(s) 170, 295, 415, 619, 923, 981, 1209, 1318, 1358
CviQI GTAC 2 cut(s) 704, 797
DdeI CTNAG 3 cut(s) 533, 1004, 1191
DpnI GATC 6 cut(s) 246, 511, 588, 616, 1199, 1242
DpnII GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
EaeI YGGCCR 2 cut(s) 342, 973
Ecl136II GAGCTC 1 cut(s) 1003
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 2 cut(s) 435, 1005
Eco47I GGWCC 2 cut(s) 653, 664
Eco53kI GAGCTC 1 cut(s) 1003
Eco57I CTGAAG 4 cut(s) 87, 425, 525, 1350
Eco72I CACGTG 1 cut(s) 425
Eco91I GGTNACC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 1003
EcoO109I RGGNCCY 1 cut(s) 653
EcoO65I GGTNACC 1 cut(s) 48
EcoRI GAATTC 2 cut(s) 816, 1084
EcoRII CCWGG 4 cut(s) 721, 880, 1012, 1334
EcoT14I CCWWGG 1 cut(s) 414
EcoT22I ATGCAT 1 cut(s) 1323
EcoT38I GRGCYC 2 cut(s) 435, 1005
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 941
FaeI CATG 9 cut(s) 173, 298, 418, 622, 926, 984, 1212, 1321, 1361
FaqI GGGAC 1 cut(s) 319
FatI CATG 9 cut(s) 169, 294, 414, 618, 922, 980, 1208, 1317, 1357
Fnu4HI GCNGC 5 cut(s) 153, 741, 894, 906, 1152
FokI GGATG 3 cut(s) 314, 504, 1055
FriOI GRGCYC 2 cut(s) 435, 1005
Fsp4HI GCNGC 5 cut(s) 153, 741, 894, 906, 1152
FspBI CTAG 1 cut(s) 597
GlaI GCGC 2 cut(s) 151, 240
GluI GCNGC 5 cut(s) 153, 741, 894, 906, 1152
GsaI CCCAGC 2 cut(s) 432, 900
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 2 cut(s) 344, 975
HapII CCGG 1 cut(s) 634
HhaI GCGC 2 cut(s) 152, 241
Hin1II CATG 9 cut(s) 173, 298, 418, 622, 926, 984, 1212, 1321, 1361
Hin6I GCGC 2 cut(s) 150, 239
HinP1I GCGC 2 cut(s) 150, 239
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 1 cut(s) 685
HpaII CCGG 1 cut(s) 634
HphI GGTGA 4 cut(s) 458, 560, 869, 1306
Hpy166II GTNNAC 3 cut(s) 128, 799, 1010
Hpy188I TCNGA 4 cut(s) 63, 733, 1192, 1264
Hpy188III TCNNGA 6 cut(s) 443, 513, 597, 612, 1034, 1364
Hpy8I GTNNAC 3 cut(s) 128, 799, 1010
HpyAV CCTTC 7 cut(s) 65, 500, 515, 539, 655, 1178, 1231
HpyCH4III ACNGT 6 cut(s) 140, 219, 260, 542, 796, 1378
HpyCH4IV ACGT 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 152, 383, 419, 578, 749, 902, 911
HpyF3I CTNAG 3 cut(s) 533, 1004, 1191
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 9 cut(s) 173, 298, 418, 622, 926, 984, 1212, 1321, 1361
HspAI GCGC 2 cut(s) 150, 239
Kzo9I GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
LmnI GCTCC 5 cut(s) 19, 267, 438, 485, 1352
Lsp1109I GCAGC 5 cut(s) 139, 727, 905, 917, 1138
LweI GCATC 5 cut(s) 322, 482, 859, 923, 1033
MaeI CTAG 1 cut(s) 597
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 5 cut(s) 48, 260, 763, 786, 844
MalI GATC 6 cut(s) 246, 511, 588, 616, 1199, 1242
MboI GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
MboII GAAGA 3 cut(s) 80, 1066, 1379
MflI RGATCY 3 cut(s) 244, 586, 614
MhlI GDGCHC 3 cut(s) 435, 1005, 1357
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 8 cut(s) 40, 816, 826, 876, 946, 1076, 1084, 1113
MluNI TGGCCA 1 cut(s) 344
MmeI TCCRAC 2 cut(s) 845, 1050
Mox20I TGGCCA 1 cut(s) 344
Mph1103I ATGCAT 1 cut(s) 1323
MscI TGGCCA 1 cut(s) 344
MseI TTAA 4 cut(s) 290, 852, 887, 1221
MslI CAYNNNNRTG 2 cut(s) 623, 1362
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 1 cut(s) 634
MspR9I CCNGG 5 cut(s) 635, 723, 882, 1014, 1336
Mva1269I GAATGC 1 cut(s) 1321
MvaI CCWGG 4 cut(s) 723, 882, 1014, 1336
MwoI GCNNNNNNNGC 8 cut(s) 20, 152, 383, 419, 578, 749, 902, 911
NciI CCSGG 1 cut(s) 635
NcoI CCATGG 1 cut(s) 414
NdeII GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
NlaIII CATG 9 cut(s) 173, 298, 418, 622, 926, 984, 1212, 1321, 1361
NlaIV GGNNCC 3 cut(s) 15, 320, 434
NmeAIII GCCGAG 3 cut(s) 362, 1001, 1373
NmuCI GTSAC 2 cut(s) 260, 763
NsiI ATGCAT 1 cut(s) 1323
NspI RCATGY 3 cut(s) 173, 984, 1361
PaeI GCATGC 1 cut(s) 173
PctI GAATGC 1 cut(s) 1321
PfeI GAWTC 1 cut(s) 685
PflMI CCANNNNNTGG 1 cut(s) 1065
PfoI TCCNGGA 1 cut(s) 633
PkrI GCNGC 5 cut(s) 154, 742, 895, 907, 1153
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 653
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 1005
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 4 cut(s) 721, 880, 1012, 1334
PspCI CACGTG 1 cut(s) 425
PspEI GGTNACC 1 cut(s) 48
PspFI CCCAGC 2 cut(s) 428, 896
PspGI CCWGG 4 cut(s) 721, 880, 1012, 1334
PspN4I GGNNCC 3 cut(s) 15, 320, 434
PspPI GGNCC 2 cut(s) 653, 664
PspPPI RGGWCCY 1 cut(s) 653
PsuI RGATCY 3 cut(s) 244, 586, 614
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 2 cut(s) 705, 798
RsaNI GTAC 2 cut(s) 704, 797
RseI CAYNNNNRTG 2 cut(s) 623, 1362
SacI GAGCTC 1 cut(s) 1005
SaqAI TTAA 4 cut(s) 290, 852, 887, 1221
SatI GCNGC 5 cut(s) 153, 741, 894, 906, 1152
Sau3AI GATC 6 cut(s) 244, 509, 586, 614, 1197, 1240
Sau96I GGNCC 2 cut(s) 653, 664
ScrFI CCNGG 5 cut(s) 635, 723, 882, 1014, 1336
SduI GDGCHC 3 cut(s) 435, 1005, 1357
SfaNI GCATC 5 cut(s) 322, 482, 859, 923, 1033
SinI GGWCC 2 cut(s) 653, 664
SmiMI CAYNNNNRTG 2 cut(s) 623, 1362
SphI GCATGC 1 cut(s) 173
Sse9I AATT 8 cut(s) 40, 816, 826, 876, 946, 1076, 1084, 1113
SsiI CCGC 1 cut(s) 1162
SspI AATATT 2 cut(s) 233, 339
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 1005
StyD4I CCNGG 5 cut(s) 633, 721, 880, 1012, 1334
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 6 cut(s) 140, 219, 260, 542, 796, 1378
TaiI ACGT 1 cut(s) 427
TaqI TCGA 5 cut(s) 228, 332, 1200, 1243, 1281
TasI AATT 8 cut(s) 40, 816, 826, 876, 946, 1076, 1084, 1113
TatI WGTACW 2 cut(s) 703, 796
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 4 cut(s) 290, 852, 887, 1221
Tru9I TTAA 4 cut(s) 290, 852, 887, 1221
TscAI CASTG 5 cut(s) 265, 403, 547, 799, 1104
TseFI GTSAC 2 cut(s) 260, 763
TseI GCWGC 5 cut(s) 152, 740, 893, 905, 1151
Tsp45I GTSAC 2 cut(s) 260, 763
TspDTI ATGAA 3 cut(s) 269, 318, 911
TspGWI ACGGA 1 cut(s) 849
TspRI CASTG 5 cut(s) 265, 403, 547, 799, 1104
Van91I CCANNNNNTGG 1 cut(s) 1065
VpaK11BI GGWCC 2 cut(s) 653, 664
XapI RAATTY 4 cut(s) 816, 946, 1084, 1113
XbaI TCTAGA 1 cut(s) 596
XceI RCATGY 3 cut(s) 173, 984, 1361
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XspI CTAG 1 cut(s) 597
Zsp2I ATGCAT 1 cut(s) 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.