MD02G1207700.v1.1

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0024360
Physical Location & Seq
Reverse (-)
20956402 .. 20958707
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1207700.v1.1.491

Sequence Viewer

Length: 273 bp
ATGCATCACATGGGTGAACGCCACCACCTCGAAGAGCTTGCTCAGCAAAGTGACGTCGTTTATGTCGCCTTCCACAATGAACACCCCACTCCGCTCCAAAAGCGCTTGCCGAGCCCTCTTCAACGAAGGGTCGTAGTAGTCATTGAAGCAATCCAGACCAAGGACCCCGTCTCCGCGGCGTTTGAGCGCCGCCGACACGTGAGTCCCGACAAAGCCCGCCGCGCCGGTGACGAGGACCGAGATTCCGTGGCGGGAACGGACTCTGGCGGATGA

Protein Analysis

91

Amino Acids

10.15

Weight (kDa)

6.64

Isoelectric Point (pI)

92.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024360)

Species Orthologous Gene IDs
malus_domestica MD02G1207700.v1.1
pyrus_communis pycom07g10480
rosa_samantha Rh4AG128600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 201
AatII GACGTC 1 cut(s) 57
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 2 cut(s) 176, 222
AciI CCGC 8 cut(s) 92, 174, 176, 190, 217, 220, 251, 267
AcvI CACGTG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 54
AfeI AGCGCT 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 2 cut(s) 122, 146
AleI CACNNNNGTG 1 cut(s) 12
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 175
Aor51HI AGCGCT 1 cut(s) 104
AspLEI GCGC 3 cut(s) 105, 189, 224
AspS9I GGNCC 2 cut(s) 163, 235
AsuHPI GGTGA 2 cut(s) 26, 239
AvaII GGWCC 2 cut(s) 163, 235
BanII GRGCYC 1 cut(s) 116
BbrPI CACGTG 1 cut(s) 199
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BcoDI GTCTC 1 cut(s) 175
BfoI RGCGCY 2 cut(s) 106, 190
BisI GCNGC 3 cut(s) 177, 190, 220
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 3 cut(s) 178, 191, 221
Bme18I GGWCC 2 cut(s) 163, 235
BmgT120I GGNCC 2 cut(s) 163, 235
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 13
Bpu1102I GCTNAGC 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 159, 174, 246
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 159, 174, 246
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 56
Bsh1236I CGCG 2 cut(s) 176, 222
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 175
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 116
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 8 cut(s) 92, 174, 176, 190, 217, 220, 251, 267
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 2 cut(s) 176, 222
BspLI GGNNCC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 159, 174, 246
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 27, 123
BstACI GRCGYC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 39, 107, 217
BstDEI CTNAG 1 cut(s) 42
BstDSI CCRYGG 2 cut(s) 174, 246
BstFNI CGCG 2 cut(s) 176, 222
BstH2I RGCGCY 2 cut(s) 106, 190
BstHHI GCGC 3 cut(s) 105, 189, 224
BstMAI GTCTC 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 43, 100, 111, 221
BstUI CGCG 2 cut(s) 176, 222
BtgI CCRYGG 2 cut(s) 174, 246
Cac8I GCNNGC 3 cut(s) 39, 107, 217
CfoI GCGC 3 cut(s) 105, 189, 224
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 163, 235
Cfr42I CCGCGG 1 cut(s) 177
CviAII CATG 1 cut(s) 10
CviJI RGCY 3 cut(s) 37, 114, 215
CviKI_1 RGCY 3 cut(s) 37, 114, 215
DdeI CTNAG 1 cut(s) 42
DrdI GACNNNNNNGTC 1 cut(s) 201
DseDI GACNNNNNNGTC 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 27, 123
EarI CTCTTC 2 cut(s) 27, 123
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 163, 235
Eco47III AGCGCT 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 63
FaqI GGGAC 1 cut(s) 189
FatI CATG 1 cut(s) 9
FauI CCCGC 2 cut(s) 224, 244
Fnu4HI GCNGC 3 cut(s) 177, 190, 220
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 177, 190, 220
GlaI GCGC 3 cut(s) 104, 188, 223
GluI GCNGC 3 cut(s) 177, 190, 220
HaeII RGCGCY 2 cut(s) 106, 190
HapII CCGG 1 cut(s) 225
HhaI GCGC 3 cut(s) 105, 189, 224
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 3 cut(s) 103, 187, 222
HinP1I GCGC 3 cut(s) 103, 187, 222
HinfI GANTC 3 cut(s) 202, 242, 260
HpaII CCGG 1 cut(s) 225
HphI GGTGA 2 cut(s) 26, 239
Hpy166II GTNNAC 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 154, 206
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 79, 120
HpyCH4IV ACGT 2 cut(s) 54, 198
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 100, 111, 221
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 54, 198
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 3 cut(s) 103, 187, 222
KspI CCGCGG 1 cut(s) 177
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 167, 238, 249
LweI GCATC 1 cut(s) 13
MaeII ACGT 2 cut(s) 54, 198
MaeIII GTNAC 2 cut(s) 50, 227
MbiI CCGCTC 1 cut(s) 94
MboII GAAGA 2 cut(s) 44, 110
MhlI GDGCHC 1 cut(s) 116
MlyI GAGTC 2 cut(s) 211, 254
MnlI CCTC 3 cut(s) 38, 126, 226
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 225
MvnI CGCG 2 cut(s) 176, 222
MwoI GCNNNNNNNGC 4 cut(s) 43, 100, 111, 221
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 50, 227
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 1 cut(s) 242
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 3 cut(s) 178, 191, 221
PleI GAGTC 2 cut(s) 210, 254
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
PpsI GAGTC 2 cut(s) 210, 254
Ppu21I YACGTR 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
PspCI CACGTG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 163, 235
PspPPI RGGWCCY 1 cut(s) 163
PsyI GACNNNGTC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 12
SacII CCGCGG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 3 cut(s) 177, 190, 220
Sau96I GGNCC 2 cut(s) 163, 235
SchI GAGTC 2 cut(s) 211, 254
SduI GDGCHC 1 cut(s) 116
SetI ASST 4 cut(s) 30, 39, 57, 201
SfaNI GCATC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 177
SgrAI CRCCGGYG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 2 cut(s) 163, 235
SmiMI CAYNNNNRTG 1 cut(s) 12
SsiI CCGC 8 cut(s) 92, 174, 176, 190, 217, 220, 251, 267
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 2 cut(s) 57, 201
TaqI TCGA 1 cut(s) 30
TaqII GACCGA 1 cut(s) 252
TauI GCSGC 3 cut(s) 179, 192, 222
TfiI GAWTC 1 cut(s) 242
TseFI GTSAC 2 cut(s) 50, 227
Tsp45I GTSAC 2 cut(s) 50, 227
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 2 cut(s) 235, 272
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 163, 235
ZraI GACGTC 1 cut(s) 55
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.