pycom07g10480

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0024360
Physical Location & Seq
Forward (+)
10464077 .. 10464695
619 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10480.2

Sequence Viewer

Length: 549 bp
ATGCATCACATGGGTGAACGCCACCACCTCGAAGAGCTTGCTCAGCAAAGGGGCGTCGTTTATGTCGCCTTCCACAATGAACACCCCACTCCGCTCCAAAAGCGCCTGCCGAGCCCTCTTCAACGAAGGGTCGTAGTAGTCATTAAAGCAGTCCAGACCAAGGACCCCATCTCCGCGGCGTTTAAGCGCCGCCGACACGTGGGTCCCGACGAAGCCGGCAGCACCGGTGACGAGGACGGAGATTCCGTGGCGAGACCGGACTTTGGCGGAGGACCTGACCCGTTTATCCCAGGCGGGTCCGCCCCAATTGTAGGTTCTGAGAGAGCGGCGGGAGGGATCGGACGGCAGAGAATTAGGGGACGGGGAGTGGAAGAAGAAGATCAAGATCAAGGTGACTTGTCCATCTTGAACTTGCCGGGCGTTGGCGGACTGATGTCGAGGTGGGACATTTGCTTGAGCTGGGTCATCTTCAATGGCGAATGTGAACAAAACCCAGGTCTCGGGTTGCTGAATTTCGGCCGGAAAGCTTGGGATTCGGGTCCGGTTTAG

Protein Analysis

183

Amino Acids

19.75

Weight (kDa)

6.16

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024360)

Species Orthologous Gene IDs
malus_domestica MD02G1207700.v1.1
pyrus_communis pycom07g10480
rosa_samantha Rh4AG128600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 201
AccBSI CCGCTC 2 cut(s) 94, 326
AccII CGCG 1 cut(s) 176
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 511
AcvI CACGTG 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 54
AfiI CCNNNNNNNGG 6 cut(s) 160, 199, 263, 311, 422, 500
AflIII ACRYGT 1 cut(s) 196
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 3 cut(s) 122, 409, 472
AjnI CCWGG 2 cut(s) 289, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AleI CACNNNNGTG 1 cut(s) 12
AluBI AGCT 3 cut(s) 37, 459, 527
AluI AGCT 3 cut(s) 37, 459, 527
Alw26I GTCTC 2 cut(s) 247, 503
AlwI GGATC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 500
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 511
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AsiGI ACCGGT 1 cut(s) 224
AspLEI GCGC 2 cut(s) 105, 189
AspS9I GGNCC 5 cut(s) 163, 203, 272, 297, 539
AsuC2I CCSGG 1 cut(s) 417
AsuHPI GGTGA 3 cut(s) 26, 239, 404
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 5 cut(s) 163, 203, 272, 297, 539
BanII GRGCYC 1 cut(s) 116
BbrPI CACGTG 1 cut(s) 199
BbvI GCAGC 1 cut(s) 231
BccI CCATC 2 cut(s) 176, 410
BceAI ACGGC 1 cut(s) 359
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 2 cut(s) 291, 495
BcnI CCSGG 1 cut(s) 417
BcoDI GTCTC 2 cut(s) 247, 503
BfoI RGCGCY 2 cut(s) 106, 190
BisI GCNGC 4 cut(s) 177, 190, 220, 327
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 4 cut(s) 178, 191, 221, 328
Bme1390I CCNGG 3 cut(s) 291, 417, 495
Bme18I GGWCC 5 cut(s) 163, 203, 272, 297, 539
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 5 cut(s) 163, 203, 272, 297, 539
BmiI GGNNCC 5 cut(s) 165, 204, 205, 298, 540
BmrFI CCNGG 3 cut(s) 291, 417, 495
BmsI GCATC 1 cut(s) 13
BoxI GACNNNNGTC 1 cut(s) 433
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 417
BsaAI YACGTR 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 2 cut(s) 247, 503
BsaJI CCNNGG 5 cut(s) 159, 174, 246, 289, 493
BsaWI WCCGGW 3 cut(s) 224, 256, 541
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 231, 261
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 199, 263, 311, 422, 500
Bse118I RCCGGY 2 cut(s) 215, 224
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 2 cut(s) 291, 495
BseDI CCNNGG 5 cut(s) 159, 174, 246, 289, 493
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 6 cut(s) 160, 199, 263, 311, 422, 500
BseMII CTCAG 2 cut(s) 56, 309
BseX3I CGGCCG 1 cut(s) 517
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 520
BshFI GGCC 1 cut(s) 519
BshTI ACCGGT 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 6 cut(s) 216, 225, 257, 416, 520, 542
BslFI GGGAC 3 cut(s) 189, 372, 458
BslI CCNNNNNNNGG 6 cut(s) 160, 199, 263, 311, 422, 500
BsmAI GTCTC 2 cut(s) 247, 503
BsmFI GGGAC 3 cut(s) 189, 372, 458
BsnI GGCC 1 cut(s) 519
Bso31I GGTCTC 2 cut(s) 247, 503
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 336, 379, 385
Bsp1720I GCTNAGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 2 cut(s) 55, 310
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 5 cut(s) 165, 204, 205, 298, 540
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 27
BspTNI GGTCTC 2 cut(s) 247, 503
BsrBI CCGCTC 2 cut(s) 94, 326
BsrFI RCCGGY 2 cut(s) 215, 224
BssAI RCCGGY 2 cut(s) 215, 224
BssECI CCNNGG 5 cut(s) 159, 174, 246, 289, 493
BssMI GATC 3 cut(s) 336, 379, 385
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 291, 495
Bst6I CTCTTC 2 cut(s) 27, 123
BstACI GRCGYC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 39, 107, 217
BstDEI CTNAG 2 cut(s) 42, 318
BstDSI CCRYGG 2 cut(s) 174, 246
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 2 cut(s) 106, 190
BstHHI GCGC 2 cut(s) 105, 189
BstKTI GATC 3 cut(s) 339, 382, 388
BstMAI GTCTC 2 cut(s) 247, 503
BstMBI GATC 3 cut(s) 336, 379, 385
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 3 cut(s) 43, 100, 111
BstNI CCWGG 2 cut(s) 291, 495
BstPAI GACNNNNGTC 1 cut(s) 433
BstSCI CCNGG 3 cut(s) 289, 415, 493
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 231
BstZI CGGCCG 1 cut(s) 517
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 2 cut(s) 174, 246
Cac8I GCNNGC 3 cut(s) 39, 107, 217
CfoI GCGC 2 cut(s) 105, 189
Cfr10I RCCGGY 2 cut(s) 215, 224
Cfr13I GGNCC 5 cut(s) 163, 203, 272, 297, 539
Cfr42I CCGCGG 1 cut(s) 177
CseI GACGC 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 37, 114, 215, 459, 519, 527
CviKI_1 RGCY 6 cut(s) 37, 114, 215, 459, 519, 527
DdeI CTNAG 2 cut(s) 42, 318
DpnI GATC 3 cut(s) 338, 381, 387
DpnII GATC 3 cut(s) 336, 379, 385
DrdI GACNNNNNNGTC 1 cut(s) 201
DseDI GACNNNNNNGTC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 517
EagI CGGCCG 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 27, 123
EarI CTCTTC 2 cut(s) 27, 123
EciI GGCGGA 3 cut(s) 282, 289, 441
EclXI CGGCCG 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 2 cut(s) 247, 503
Eco47I GGWCC 5 cut(s) 163, 203, 272, 297, 539
Eco52I CGGCCG 1 cut(s) 517
Eco72I CACGTG 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 500
EcoO109I RGGNCCY 3 cut(s) 163, 203, 272
EcoRII CCWGG 2 cut(s) 289, 493
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 13
FaiI YATR 2 cut(s) 11, 63
FaqI GGGAC 3 cut(s) 189, 372, 458
FatI CATG 1 cut(s) 9
FauI CCCGC 2 cut(s) 287, 322
Fnu4HI GCNGC 4 cut(s) 177, 190, 220, 327
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 4 cut(s) 177, 190, 220, 327
GlaI GCGC 2 cut(s) 104, 188
GluI GCNGC 4 cut(s) 177, 190, 220, 327
GsaI CCCAGC 1 cut(s) 463
HaeII RGCGCY 2 cut(s) 106, 190
HaeIII GGCC 1 cut(s) 519
HapII CCGG 6 cut(s) 216, 225, 257, 416, 520, 542
HgaI GACGC 1 cut(s) 43
HhaI GCGC 2 cut(s) 105, 189
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 2 cut(s) 103, 187
HinP1I GCGC 2 cut(s) 103, 187
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 2 cut(s) 242, 533
HpaII CCGG 6 cut(s) 216, 225, 257, 416, 520, 542
HphI GGTGA 3 cut(s) 26, 239, 404
Hpy166II GTNNAC 2 cut(s) 17, 485
Hpy188I TCNGA 2 cut(s) 319, 341
Hpy188III TCNNGA 4 cut(s) 154, 206, 383, 406
Hpy8I GTNNAC 2 cut(s) 17, 485
Hpy99I CGWCG 2 cut(s) 59, 212
HpyAV CCTTC 2 cut(s) 79, 120
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 100, 111
HpyF3I CTNAG 2 cut(s) 42, 318
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 2 cut(s) 103, 187
KflI GGGWCCC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 3 cut(s) 336, 379, 385
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 99
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 227, 392
MalI GATC 3 cut(s) 338, 381, 387
MbiI CCGCTC 2 cut(s) 94, 326
MboI GATC 3 cut(s) 336, 379, 385
MboII GAAGA 6 cut(s) 44, 110, 383, 386, 389, 460
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 3 cut(s) 306, 351, 511
MnlI CCTC 6 cut(s) 38, 126, 226, 263, 326, 432
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 215
MseI TTAA 2 cut(s) 144, 183
MslI CAYNNNNRTG 1 cut(s) 12
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 6 cut(s) 216, 225, 257, 416, 520, 542
MspR9I CCNGG 3 cut(s) 291, 417, 495
MunI CAATTG 1 cut(s) 306
MvaI CCWGG 2 cut(s) 291, 495
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 43, 100, 111
NaeI GCCGGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 417
NdeII GATC 3 cut(s) 336, 379, 385
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 5 cut(s) 165, 204, 205, 298, 540
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 2 cut(s) 227, 392
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 243
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 242, 533
PinAI ACCGGT 1 cut(s) 224
PkrI GCNGC 4 cut(s) 178, 191, 221, 328
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 199
PpuMI RGGWCCY 3 cut(s) 163, 203, 272
PshAI GACNNNNGTC 1 cut(s) 433
Psp5II RGGWCCY 3 cut(s) 163, 203, 272
Psp6I CCWGG 2 cut(s) 289, 493
PspCI CACGTG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 2 cut(s) 289, 493
PspN4I GGNNCC 5 cut(s) 165, 204, 205, 298, 540
PspPI GGNCC 5 cut(s) 163, 203, 272, 297, 539
PspPPI RGGWCCY 3 cut(s) 163, 203, 272
RseI CAYNNNNRTG 1 cut(s) 12
SacII CCGCGG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 144, 183
SatI GCNGC 4 cut(s) 177, 190, 220, 327
Sau3AI GATC 3 cut(s) 336, 379, 385
Sau96I GGNCC 5 cut(s) 163, 203, 272, 297, 539
ScrFI CCNGG 3 cut(s) 291, 417, 495
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 1 cut(s) 13
Sfr303I CCGCGG 1 cut(s) 177
SgrAI CRCCGGYG 1 cut(s) 224
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 5 cut(s) 163, 203, 272, 297, 539
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 454
SmoI CTYRAG 1 cut(s) 454
Sse9I AATT 3 cut(s) 306, 351, 511
StyD4I CCNGG 3 cut(s) 289, 415, 493
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 30, 437
TasI AATT 3 cut(s) 306, 351, 511
TauI GCSGC 3 cut(s) 179, 192, 329
TfiI GAWTC 2 cut(s) 242, 533
Tru1I TTAA 2 cut(s) 144, 183
Tru9I TTAA 2 cut(s) 144, 183
TseFI GTSAC 2 cut(s) 227, 392
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 2 cut(s) 227, 392
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 2 cut(s) 235, 252
VpaK11BI GGWCC 5 cut(s) 163, 203, 272, 297, 539
XapI RAATTY 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.