Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0024367

Physical Location & Seq

Genomic Coordinates Forward (+)

25297025 .. 25310344

Gene Structure 13320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1217800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGTAAAGCTCAAGAATCAACTATTACTTGTGCTTCAACTGATTGTGATGTTGAGAAATTGGTTTCTACTGCAGCAGGGCAAGAGCCAAACAATGTGGAGGAGCAAAGCAACAACAAGAAGAGGCAGACGAATAGTACTCTTACTAGTGATGATCACAGTGACAGCAACCACCAGAAGTACCGCAGCGTAAGATTGCGAAGTAGTGGCAAATGGGTGGCGGAAATCCACCAGAAAAGGAAGAAATTATGGCTAGGGACATACCCAACAGATGAAATGGCAGCTCGAGCTTATGATGCAGCAGCTCTAGCCCTCAAAGGTGCTTCTGCTAATCTCAATTTCCCTGAATTGGCTCAAGCACTTCCCCTATCGGACTCCCTGTCTCCCATGGACATTCAAGTTGCAGCTTCGGCTTCTGAGGAAAAGCAGATTATAGGTGGAGCAGTGACTAAAGAAGCAGAGCCCAGCAGCAAAGCTCAAGAATCGACTGGCATTTGTGCTTCAATTGATTGTGATGTGGACAAATTGGTTTCTACTGCAGCAGAGAATTGTACATCGGAAAAAGGGCAAGAGCCAAACAATGTTGAAGAGCAAAATAACAAGAAGAAGAGGCAGAGGACTCTGAATTGTACATCTGAAAAAGGGCAACAGCCAAACAATGTTGAAGAGCAAAACAACAAGAAGAGGCAGAGGACTAGTACTAGTGATGATCACAGTGGCAGCAACCACCAGAAGTACCGCGGCGTAAGATTGCGCAGTAGTGGCAAATGGGTGGCGGAAATCCGCCAGAAAAGGAAGAAATTCTGGCTAGGGACATACCCAACAGCTGAAATGGCAGCTCGAGCTTATGATGCAGCAGCTCTATCCCTCAAAGGTGAAGCAGTGACTGAAGAAGCAGAGCCCAGCAGTAAAGCTCAAGAATCAACTAGTATTTGTGCTTCAACTGATTGTGATGCGGACAAATTGGTTTCTATTATAGAAGGATGTCCACACCAAGTGAAAAACCTGAAGTTGAATTATCTTGATATGGACCAAGCTTTTGAATCAATCTTCCCTTCTTGGTTATCCAACTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

360

Amino Acids

39.38

Weight (kDa)

6.15

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	60 - 107	1.1e-12	AP2 domain
AP2	PF00847	245 - 292	5.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024367)

Species	Orthologous Gene IDs
malus_domestica	MD02G1217800.v1.1 MD07G1099500.v1.1
pyrus_communis	pycom07g08160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	755
AccII	CGCG	1 cut(s)	741
AciI	CCGC	7 cut(s)	184, 221, 739, 741, 776, 784, 956
AcsI	RAATTY	1 cut(s)	800
AcuI	CTGAAG	2 cut(s)	909, 1028
AdeI	CACNNNGTG	1 cut(s)	997
AfaI	GTAC	6 cut(s)	139, 182, 553, 631, 700, 737
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	8 cut(s)	39, 398, 504, 587, 665, 942, 1015, 1043
AhdI	GACNNNNNGTC	1 cut(s)	379
AhlI	ACTAGT	4 cut(s)	146, 695, 701, 926
Alw26I	GTCTC	1 cut(s)	387
AlwNI	CAGNNNCTG	1 cut(s)	887
Ama87I	CYCGRG	2 cut(s)	285, 840
ApoI	RAATTY	1 cut(s)	800
ArsI	GACNNNNNNTTYG	2 cut(s)	1022, 1054
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	2 cut(s)	887, 1065
AvaI	CYCGRG	2 cut(s)	285, 840
AvaII	GGWCC	1 cut(s)	1030
BanII	GRGCYC	2 cut(s)	465, 903
BarI	GAAGNNNNNNTAC	2 cut(s)	922, 954
BclI	TGATCA	2 cut(s)	154, 709
BcoDI	GTCTC	1 cut(s)	387
BcuI	ACTAGT	4 cut(s)	146, 695, 701, 926
BfaI	CTAG	8 cut(s)	147, 254, 308, 696, 702, 809, 927, 1078
BfmI	CTRYAG	2 cut(s)	72, 537
BmcAI	AGTACT	2 cut(s)	139, 700
Bme18I	GGWCC	1 cut(s)	1030
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmeT110I	CYCGRG	2 cut(s)	285, 840
BmgT120I	GGNCC	1 cut(s)	1030
BmsI	GCATC	3 cut(s)	286, 841, 943
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuEI	CTTGAG	3 cut(s)	339, 462, 900
BsaJI	CCNNGG	2 cut(s)	387, 739
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	493
BseDI	CCNNGG	2 cut(s)	387, 739
BseGI	GGATG	1 cut(s)	989
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	116
BseYI	CCCAGC	2 cut(s)	464, 902
Bsh1236I	CGCG	1 cut(s)	741
BsiHKCI	CYCGRG	2 cut(s)	285, 840
BslFI	GGGAC	2 cut(s)	271, 826
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	271, 826
BsoBI	CYCGRG	2 cut(s)	285, 840
Bsp1286I	GDGCHC	2 cut(s)	465, 903
Bsp1407I	TGTACA	2 cut(s)	551, 629
Bsp143I	GATC	2 cut(s)	154, 709
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	7 cut(s)	184, 221, 739, 741, 776, 784, 956
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	741
BspMAI	CTGCAG	2 cut(s)	76, 541
BspQI	GCTCTTC	2 cut(s)	582, 660
BsrGI	TGTACA	2 cut(s)	551, 629
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	387, 739
BssMI	GATC	2 cut(s)	154, 709
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	161, 716
Bst6I	CTCTTC	5 cut(s)	116, 582, 602, 660, 677
BstAUI	TGTACA	2 cut(s)	551, 629
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	2 cut(s)	387, 739
BstF5I	GGATG	1 cut(s)	989
BstFNI	CGCG	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	2 cut(s)	157, 712
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	2 cut(s)	154, 709
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 296, 308, 410, 762, 833, 842, 851
BstSFI	CTRYAG	2 cut(s)	72, 537
BstUI	CGCG	1 cut(s)	741
BtgI	CCRYGG	2 cut(s)	387, 739
BtsCI	GGATG	1 cut(s)	989
BtsI	GCAGTG	2 cut(s)	450, 888
BtsIMutI	CAGTG	4 cut(s)	166, 450, 721, 888
CaiI	CAGNNNCTG	1 cut(s)	887
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	1030
Cfr42I	CCGCGG	1 cut(s)	742
Csp6I	GTAC	6 cut(s)	138, 181, 552, 630, 699, 736
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	6 cut(s)	138, 181, 552, 630, 699, 736
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	156, 711
DpnII	GATC	2 cut(s)	154, 709
DraIII	CACNNNGTG	1 cut(s)	997
DriI	GACNNNNNGTC	1 cut(s)	379
Eam1104I	CTCTTC	5 cut(s)	116, 582, 602, 660, 677
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	5 cut(s)	116, 582, 602, 660, 677
EciI	GGCGGA	3 cut(s)	236, 773, 791
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	2 cut(s)	465, 903
Eco47I	GGWCC	1 cut(s)	1030
Eco57I	CTGAAG	2 cut(s)	909, 1028
Eco88I	CYCGRG	2 cut(s)	285, 840
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	2 cut(s)	465, 903
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	1 cut(s)	391
FaiI	YATR	9 cut(s)	250, 262, 294, 389, 434, 817, 849, 977, 1028
FaqI	GGGAC	2 cut(s)	271, 826
FatI	CATG	1 cut(s)	387
FbaI	TGATCA	2 cut(s)	154, 709
FokI	GGATG	1 cut(s)	996
FriOI	GRGCYC	2 cut(s)	465, 903
FspBI	CTAG	8 cut(s)	147, 254, 308, 696, 702, 809, 927, 1078
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	1 cut(s)	755
GsaI	CCCAGC	2 cut(s)	468, 906
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	6 cut(s)	17, 374, 482, 619, 920, 1043
HphI	GGTGA	2 cut(s)	887, 1065
Hpy166II	GTNNAC	2 cut(s)	520, 989
Hpy188I	TCNGA	5 cut(s)	373, 418, 559, 624, 637
Hpy188III	TCNNGA	4 cut(s)	14, 479, 917, 1022
Hpy8I	GTNNAC	2 cut(s)	520, 989
HpyAV	CCTTC	2 cut(s)	974, 1065
HpyCH4III	ACNGT	2 cut(s)	161, 716
HpyCH4V	TGCA	5 cut(s)	74, 299, 404, 539, 854
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 296, 308, 410, 762, 833, 842, 851
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	754
Ksp22I	TGATCA	2 cut(s)	154, 709
KspI	CCGCGG	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	154, 709
LguI	GCTCTTC	2 cut(s)	582, 660
LmnI	GCTCC	2 cut(s)	103, 440
LweI	GCATC	3 cut(s)	286, 841, 943
MaeI	CTAG	8 cut(s)	147, 254, 308, 696, 702, 809, 927, 1078
MaeIII	GTNAC	3 cut(s)	161, 445, 883
MalI	GATC	2 cut(s)	156, 711
MboI	GATC	2 cut(s)	154, 709
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	465, 903
MlyI	GAGTC	2 cut(s)	368, 613
MnlI	CCTC	9 cut(s)	94, 117, 323, 412, 603, 609, 678, 684, 878
MroXI	GAANNNNTTC	1 cut(s)	800
MspA1I	CMGCKG	2 cut(s)	741, 827
MunI	CAATTG	1 cut(s)	504
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	8 cut(s)	287, 296, 308, 410, 762, 833, 842, 851
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	154, 709
NlaIII	CATG	1 cut(s)	391
NmuCI	GTSAC	3 cut(s)	161, 445, 883
NsbI	TGCGCA	1 cut(s)	755
PaeR7I	CTCGAG	2 cut(s)	285, 840
PciSI	GCTCTTC	2 cut(s)	582, 660
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	4 cut(s)	17, 482, 920, 1043
PleI	GAGTC	2 cut(s)	368, 613
PpsI	GAGTC	2 cut(s)	368, 613
PspFI	CCCAGC	2 cut(s)	464, 902
PspPI	GGNCC	1 cut(s)	1030
PspXI	VCTCGAGB	2 cut(s)	285, 840
PstI	CTGCAG	2 cut(s)	76, 541
PstNI	CAGNNNCTG	1 cut(s)	887
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	6 cut(s)	139, 182, 553, 631, 700, 737
RsaNI	GTAC	6 cut(s)	138, 181, 552, 630, 699, 736
SacII	CCGCGG	1 cut(s)	742
SapI	GCTCTTC	2 cut(s)	582, 660
Sau3AI	GATC	2 cut(s)	154, 709
Sau96I	GGNCC	1 cut(s)	1030
ScaI	AGTACT	2 cut(s)	139, 700
SchI	GAGTC	2 cut(s)	368, 613
SduI	GDGCHC	2 cut(s)	465, 903
SfaNI	GCATC	3 cut(s)	286, 841, 943
SfcI	CTRYAG	2 cut(s)	72, 537
Sfr274I	CTCGAG	2 cut(s)	285, 840
Sfr303I	CCGCGG	1 cut(s)	742
SgrBI	CCGCGG	1 cut(s)	742
SinI	GGWCC	1 cut(s)	1030
SlaI	CTCGAG	2 cut(s)	285, 840
SmlI	CTYRAG	6 cut(s)	12, 285, 354, 477, 840, 915
SmoI	CTYRAG	6 cut(s)	12, 285, 354, 477, 840, 915
SpeI	ACTAGT	4 cut(s)	146, 695, 701, 926
SsiI	CCGC	7 cut(s)	184, 221, 739, 741, 776, 784, 956
SspMI	CTAG	8 cut(s)	147, 254, 308, 696, 702, 809, 927, 1078
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	161, 716
TaqI	TCGA	3 cut(s)	286, 485, 841
TatI	WGTACW	4 cut(s)	137, 551, 629, 698
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	4 cut(s)	17, 482, 920, 1043
TscAI	CASTG	4 cut(s)	166, 450, 721, 888
TseFI	GTSAC	3 cut(s)	161, 445, 883
Tsp45I	GTSAC	3 cut(s)	161, 445, 883
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	4 cut(s)	166, 450, 721, 888
VpaK11BI	GGWCC	1 cut(s)	1030
XapI	RAATTY	1 cut(s)	800
XhoI	CTCGAG	2 cut(s)	285, 840
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	8 cut(s)	147, 254, 308, 696, 702, 809, 927, 1078
ZrmI	AGTACT	2 cut(s)	139, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.