Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024367

Physical Location & Seq

Genomic Coordinates Reverse (-)

10964414 .. 10968649

Gene Structure 4236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1099500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGACAAATTCCGATTCTTTAACCGACAAAGACACTCAAAATTGGACATCCGAAAGAGGGCAGGAGCCAAACATTTCGAAAGAGCAAAGCCGCAATAAGAAGAAGAAGAGGCAGAGGAATAATGATCACAGCTACGGCGGCAAGCACCCGAACTACCGCGGCGTGTGGTTGCGCCGGAGGACCAAATGGGTGTCGGAAATCAGCGATAAGGGGAAGAAATTCAGAATATGGTTAGGGACATACCCAAAAGCTGAAATGGCAGCTAGAGCTTACGATGCGGCAGCTCTAGCCCTCCAAGGTGCTTCTGCTTCTCTCAATTTCCCTGAATTGGCAAAATCACTTCCCAAACCAGAATCCCTGTCTCCATCGAGCATCCAGGCTGCCGCTGCTAAGGCAGCAGCAGAAGCAGAAGCAGAAACAGCTTTTGGGAAAAAGCAGATTCTATGGGAAGCAGTGACTGAAGAAGCAAAAGCCAGCAGCATAGATCAAGACCCAACTAGTACTATTGCTTCAACTGATTGTGATGCTGAGAAATTGGTTTCCAATGCAGCTGAATCCTTCAAAATCTCAATCGAATACATTCCCATAAATTCAGAGGACTGTACATCCGAAAAATGGAGAGAGCCAAACAATGCGGAAGAGCAAAGCATCAAAAAGAAGAAGAAGAGGCAGAGGACTAGTACTTGTACTAGTGATGATCATCACTGTGAGGGCAGCAACCACCAGAAGTACCGTGGTGTCAGATGGCGCAAAAATGGCAAATGGGGGTCGGTAATCAGCCAGAAAGGGAAAAAATTATGGCTAGGGTCATTCCCAACAGCTGAAATGGCAGCTCGAGCTTATGATGCAGCAGCTCTAGCCCTCAAAGGTGCTTCTGCTGATCTCAATTTCCCTGAATTAGCGCAAGCACTTCCCCAATCAGATTCCCCGTCTCCAATGGACATTCAGGCTGCAGCTTCTGCTTCTGAGGAAATGCAGATTGTATGTGAAGCAGTGACTGAAGAAGCAGATCCCAGGGGAAAAGCTAATCTTCCCATGTCACTGAATTCAAATAATGCTCAAGAATCAACTAGTACTTGTGCTTCAACTGCAGAAGGATGTGCACACCAAGTGAAGAACTTGGAGTTGAATTATCTTGATATGGACAAAGCTTTTGAATCCATCTTCCCTTCTTGGTTGTCCAACTCACCTGAGAGAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

401

Amino Acids

44.02

Weight (kDa)

7.56

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	50 - 100	1.9e-12	AP2 domain
AP2	PF00847	243 - 290	3.2e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024367)

Species	Orthologous Gene IDs
malus_domestica	MD02G1217800.v1.1 MD07G1099500.v1.1
pyrus_communis	pycom07g08160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	7 cut(s)	91, 138, 157, 159, 278, 384, 635
AclWI	GGATC	1 cut(s)	1004
AcsI	RAATTY	4 cut(s)	7, 218, 589, 1045
AcuI	CTGAAG	2 cut(s)	480, 1020
AdeI	CACNNNGTG	1 cut(s)	1111
AfaI	GTAC	6 cut(s)	502, 604, 682, 688, 731, 1075
AfiI	CCNNNNNNNGG	3 cut(s)	57, 328, 615
AgsI	TTSAA	6 cut(s)	513, 562, 1050, 1086, 1129, 1157
AhlI	ACTAGT	4 cut(s)	497, 677, 689, 1070
AjnI	CCWGG	2 cut(s)	375, 1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
Alw21I	GWGCWC	1 cut(s)	1105
Alw26I	GTCTC	2 cut(s)	366, 936
Alw44I	GTGCAC	1 cut(s)	1101
AlwI	GGATC	1 cut(s)	1004
AlwNI	CAGNNNCTG	3 cut(s)	458, 959, 998
Ama87I	CYCGRG	1 cut(s)	834
ApaLI	GTGCAC	1 cut(s)	1101
ApoI	RAATTY	4 cut(s)	7, 218, 589, 1045
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
Asp700I	GAANNNNTTC	2 cut(s)	218, 579
AspLEI	GCGC	3 cut(s)	174, 750, 904
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	1179
AsuII	TTCGAA	1 cut(s)	77
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	1105
BarI	GAAGNNNNNNTAC	4 cut(s)	493, 525, 1066, 1098
Bbv12I	GWGCWC	1 cut(s)	1105
BccI	CCATC	3 cut(s)	373, 738, 1169
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	377, 1015
BclI	TGATCA	2 cut(s)	124, 697
BcoDI	GTCTC	2 cut(s)	366, 936
BcuI	ACTAGT	4 cut(s)	497, 677, 689, 1070
BfaI	CTAG	8 cut(s)	264, 287, 498, 678, 690, 803, 857, 1071
BfmI	CTRYAG	2 cut(s)	951, 1089
BmcAI	AGTACT	3 cut(s)	502, 682, 1075
Bme1390I	CCNGG	2 cut(s)	377, 1015
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	377, 1015
BmsI	GCATC	5 cut(s)	265, 381, 514, 657, 835
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	1044
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	5 cut(s)	157, 295, 733, 1013, 1014
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 328, 615
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	377, 1015
BseDI	CCNNGG	5 cut(s)	157, 295, 733, 1013, 1014
BseGI	GGATG	4 cut(s)	47, 372, 605, 1103
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	3 cut(s)	57, 328, 615
BseMII	CTCAG	3 cut(s)	519, 957, 1182
BseSI	GKGCMC	1 cut(s)	1105
Bsh1236I	CGCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	1105
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	57, 328, 615
BsmAI	GTCTC	2 cut(s)	366, 936
BsmBI	CGTCTC	1 cut(s)	936
BsmFI	GGGAC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	1105
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	124, 484, 697, 880, 1009
BspACI	CCGC	7 cut(s)	91, 138, 157, 159, 278, 384, 635
BspCNI	CTCAG	3 cut(s)	520, 958, 1183
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	2 cut(s)	955, 1093
BspPI	GGATC	1 cut(s)	1004
BspQI	GCTCTTC	1 cut(s)	633
BspT104I	TTCGAA	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	602
BssECI	CCNNGG	5 cut(s)	157, 295, 733, 1013, 1014
BssMI	GATC	5 cut(s)	124, 484, 697, 880, 1009
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	377, 1015
Bst4CI	ACNGT	3 cut(s)	602, 707, 734
Bst6I	CTCTTC	3 cut(s)	101, 633, 659
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstAUI	TGTACA	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	143, 475, 906
BstDEI	CTNAG	4 cut(s)	390, 528, 966, 1191
BstDSI	CCRYGG	2 cut(s)	157, 733
BstF5I	GGATG	4 cut(s)	47, 372, 605, 1103
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	174, 750, 904
BstKTI	GATC	5 cut(s)	127, 487, 700, 883, 1012
BstMAI	GTCTC	2 cut(s)	366, 936
BstMBI	GATC	5 cut(s)	124, 484, 697, 880, 1009
BstNI	CCWGG	2 cut(s)	377, 1015
BstSCI	CCNGG	2 cut(s)	375, 1013
BstSFI	CTRYAG	2 cut(s)	951, 1089
BstSLI	GKGCMC	1 cut(s)	1105
BstUI	CGCG	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BtgI	CCRYGG	2 cut(s)	157, 733
BtsCI	GGATG	4 cut(s)	47, 372, 605, 1103
BtsI	GCAGTG	2 cut(s)	459, 999
BtsIMutI	CAGTG	4 cut(s)	459, 703, 999, 1040
Cac8I	GCNNGC	3 cut(s)	143, 475, 906
CaiI	CAGNNNCTG	3 cut(s)	458, 959, 998
CfoI	GCGC	3 cut(s)	174, 750, 904
Cfr13I	GGNCC	1 cut(s)	180
Cfr42I	CCGCGG	1 cut(s)	160
Csp6I	GTAC	6 cut(s)	501, 603, 681, 687, 730, 1074
CviAII	CATG	1 cut(s)	1036
CviQI	GTAC	6 cut(s)	501, 603, 681, 687, 730, 1074
DdeI	CTNAG	4 cut(s)	390, 528, 966, 1191
DpnI	GATC	5 cut(s)	126, 486, 699, 882, 1011
DpnII	GATC	5 cut(s)	124, 484, 697, 880, 1009
DraIII	CACNNNGTG	1 cut(s)	1111
Eam1104I	CTCTTC	3 cut(s)	101, 633, 659
EarI	CTCTTC	3 cut(s)	101, 633, 659
Eco130I	CCWWGG	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	480, 1020
Eco88I	CYCGRG	1 cut(s)	834
EcoRI	GAATTC	1 cut(s)	1045
EcoRII	CCWGG	2 cut(s)	375, 1013
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	936
FaeI	CATG	1 cut(s)	1039
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	1035
FbaI	TGATCA	2 cut(s)	124, 697
FokI	GGATG	4 cut(s)	34, 359, 592, 1110
FspBI	CTAG	8 cut(s)	264, 287, 498, 678, 690, 803, 857, 1071
GlaI	GCGC	3 cut(s)	173, 749, 903
HapII	CCGG	1 cut(s)	175
HhaI	GCGC	3 cut(s)	174, 750, 904
Hin1II	CATG	1 cut(s)	1039
Hin6I	GCGC	3 cut(s)	172, 748, 902
HinP1I	GCGC	3 cut(s)	172, 748, 902
HindIII	AAGCTT	1 cut(s)	1149
HinfI	GANTC	7 cut(s)	14, 353, 439, 554, 923, 1064, 1157
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	1179
Hpy166II	GTNNAC	1 cut(s)	1103
Hpy188I	TCNGA	9 cut(s)	13, 52, 196, 224, 595, 610, 743, 922, 967
Hpy188III	TCNNGA	3 cut(s)	488, 1061, 1136
Hpy8I	GTNNAC	1 cut(s)	1103
HpyAV	CCTTC	3 cut(s)	568, 1088, 1179
HpyCH4III	ACNGT	3 cut(s)	602, 707, 734
HpyCH4V	TGCA	6 cut(s)	548, 848, 953, 976, 1091, 1103
HpyF3I	CTNAG	4 cut(s)	390, 528, 966, 1191
Hsp92II	CATG	1 cut(s)	1039
HspAI	GCGC	3 cut(s)	172, 748, 902
Ksp22I	TGATCA	2 cut(s)	124, 697
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	124, 484, 697, 880, 1009
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	1 cut(s)	64
LweI	GCATC	5 cut(s)	265, 381, 514, 657, 835
MaeI	CTAG	8 cut(s)	264, 287, 498, 678, 690, 803, 857, 1071
MaeIII	GTNAC	3 cut(s)	454, 994, 1038
MalI	GATC	5 cut(s)	126, 486, 699, 882, 1011
MboI	GATC	5 cut(s)	124, 484, 697, 880, 1009
MflI	RGATCY	1 cut(s)	1009
MhlI	GDGCHC	1 cut(s)	1105
MmeI	TCCRAC	1 cut(s)	174
MroXI	GAANNNNTTC	2 cut(s)	218, 579
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	4 cut(s)	159, 386, 551, 821
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	377, 1015
MvaI	CCWGG	2 cut(s)	377, 1015
MvnI	CGCG	1 cut(s)	159
NdeII	GATC	5 cut(s)	124, 484, 697, 880, 1009
NlaIII	CATG	1 cut(s)	1039
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	454, 994, 1038
NspV	TTCGAA	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	834
PasI	CCCWGGG	1 cut(s)	1014
PciSI	GCTCTTC	1 cut(s)	633
PdmI	GAANNNNTTC	2 cut(s)	218, 579
PfeI	GAWTC	7 cut(s)	14, 353, 439, 554, 923, 1064, 1157
Psp6I	CCWGG	2 cut(s)	375, 1013
PspGI	CCWGG	2 cut(s)	375, 1013
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	180
PspXI	VCTCGAGB	1 cut(s)	834
PstI	CTGCAG	2 cut(s)	955, 1093
PstNI	CAGNNNCTG	3 cut(s)	458, 959, 998
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	2 cut(s)	551, 821
RsaI	GTAC	6 cut(s)	502, 604, 682, 688, 731, 1075
RsaNI	GTAC	6 cut(s)	501, 603, 681, 687, 730, 1074
RseI	CAYNNNNRTG	1 cut(s)	705
SacII	CCGCGG	1 cut(s)	160
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	5 cut(s)	124, 484, 697, 880, 1009
Sau96I	GGNCC	1 cut(s)	180
ScaI	AGTACT	3 cut(s)	502, 682, 1075
ScrFI	CCNGG	2 cut(s)	377, 1015
SduI	GDGCHC	1 cut(s)	1105
SfaNI	GCATC	5 cut(s)	265, 381, 514, 657, 835
SfcI	CTRYAG	2 cut(s)	951, 1089
Sfr274I	CTCGAG	1 cut(s)	834
Sfr303I	CCGCGG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	77
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	2 cut(s)	834, 1059
SmoI	CTYRAG	2 cut(s)	834, 1059
SpeI	ACTAGT	4 cut(s)	497, 677, 689, 1070
SsiI	CCGC	7 cut(s)	91, 138, 157, 159, 278, 384, 635
SspMI	CTAG	8 cut(s)	264, 287, 498, 678, 690, 803, 857, 1071
StyD4I	CCNGG	2 cut(s)	375, 1013
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	602, 707, 734
TaqI	TCGA	4 cut(s)	77, 368, 573, 835
TatI	WGTACW	5 cut(s)	500, 602, 680, 686, 1073
TauI	GCSGC	5 cut(s)	93, 141, 162, 281, 386
TfiI	GAWTC	7 cut(s)	14, 353, 439, 554, 923, 1064, 1157
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TscAI	CASTG	4 cut(s)	459, 710, 999, 1047
TseFI	GTSAC	3 cut(s)	454, 994, 1038
Tsp45I	GTSAC	3 cut(s)	454, 994, 1038
TspRI	CASTG	4 cut(s)	459, 710, 999, 1047
VneI	GTGCAC	1 cut(s)	1101
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	4 cut(s)	7, 218, 589, 1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XhoI	CTCGAG	1 cut(s)	834
XmnI	GAANNNNTTC	2 cut(s)	218, 579
XspI	CTAG	8 cut(s)	264, 287, 498, 678, 690, 803, 857, 1071
ZrmI	AGTACT	3 cut(s)	502, 682, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.