Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024367

Physical Location & Seq

Genomic Coordinates Reverse (-)

7544744 .. 7547278

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGACAAATTCCGATTCTTTAGCCGATAAAGACACACAAAATTGGACATCCGAAAGAGGGCAGGAGCCAAACATTTCGGAAGAGCAAAGCCGCAATAAGAAGAAGAAGAGGCAGAGGAATAATGATCACAGCTACGGCGGCAAGCATCCGAAGTACCGCGGCGTGTGGTTGCGCCGGAGGACCAAATGGGTGTCGGAAATCTGCGATAAAAGGAAGAAATTCAGAATATGGTTAGGGACATACCCAAAAGCTGAAATGGCAGCTAGAGCTTATGATGCGGCAGCTCTAGCCCTCCAAGGTGCTTCTGCTTCTCTCAATTTCCCTGAACTGGCAACATCACTTCCCAAACCAGAATCCCTGTCTCCATCGAGCATCCAGGCTGCAGCTGCTAAGGCAGCGGCAGCGGAAGCGGAAGCAGAAACAGCTTTTGGGGAAAAGCAGATTGTATGGGAAGCAGTGACTGAAGAAGCAAAAGCCAGCAGCATAGATCAAGACCCAACTAGTACTATTGCTTCCATTGATTGTGATGCTGAGAAATTGGTTTCGAATGCAGCAGAATCCTTCAAAATCTCAACCGAATACATTCCCATAAATTCAGAGGATTGTACATCCGAAAAAGGGAAAGAGCCAAACAATGCGGAAGAGCAAAGCATCAAGAAGAAGAAGAGGCAGAGGACTAGTACTTGTACTAGTGATGATCATCACAGTGAGGGCAGCAACCAGCAGAAGTACCGTGGTGTCAGATTGCGCAAAAATGGCAAATGGGTGTCGGAAATCCGCCAGAAAGGGAAAAAATTATGGTTAGGGTCATACCCAACAGCTGAAATGGCAGCTCGAGCTTATGATGCAGCAGCTCTAAGCCTCAAAGGTGCTTCTGCTAATCTCAATTTCCCTGAATTAGCGCAACCACTTCCCCAATCAGATTCCCTGTCTCCAACGGACATGCAGGCTGCAGCTTCTGCTTCTGGGGAAATGCAGATTGTATGTGAAGCAGTGACTGAAGAAGCAGATCCCAGGAGAAAAGCCAATCTTCTCATGTCACCAAATTCAAATAATGCTCAGGAATCAACTAGTACTTGTGCTTCAACTGCAGAAGGATGTCCACACCAAATGAAAAACTTGGAGATGATTACCGCCGGGAAACAACTTGCCTCCAGCATCTATACCGCTTTCCTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

394

Amino Acids

43.08

Weight (kDa)

8.32

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024367)

Species	Orthologous Gene IDs
malus_domestica	MD02G1217800.v1.1 MD07G1099500.v1.1
pyrus_communis	pycom07g08160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	749
AccII	CGCG	1 cut(s)	159
AclWI	GGATC	1 cut(s)	1004
AcsI	RAATTY	4 cut(s)	7, 218, 592, 1045
AcuI	CTGAAG	2 cut(s)	483, 1020
AfaI	GTAC	7 cut(s)	155, 505, 607, 682, 688, 731, 1075
AfiI	CCNNNNNNNGG	3 cut(s)	57, 328, 618
AgsI	TTSAA	3 cut(s)	565, 1050, 1086
AhlI	ACTAGT	4 cut(s)	500, 677, 689, 1070
AjnI	CCWGG	2 cut(s)	375, 1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
Alw26I	GTCTC	2 cut(s)	366, 936
AlwI	GGATC	1 cut(s)	1004
AlwNI	CAGNNNCTG	3 cut(s)	461, 959, 998
Ama87I	CYCGRG	1 cut(s)	834
ApoI	RAATTY	4 cut(s)	7, 218, 592, 1045
Asp700I	GAANNNNTTC	2 cut(s)	218, 582
AspLEI	GCGC	3 cut(s)	174, 750, 904
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	1 cut(s)	1138
AsuHPI	GGTGA	1 cut(s)	1032
AsuII	TTCGAA	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	4 cut(s)	496, 528, 1066, 1098
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	377, 1015
BclI	TGATCA	2 cut(s)	124, 697
BcnI	CCSGG	1 cut(s)	1138
BcoDI	GTCTC	2 cut(s)	366, 936
BcuI	ACTAGT	4 cut(s)	500, 677, 689, 1070
BfaI	CTAG	6 cut(s)	264, 287, 501, 678, 690, 1071
BfmI	CTRYAG	3 cut(s)	381, 951, 1089
BmcAI	AGTACT	3 cut(s)	505, 682, 1075
Bme1390I	CCNGG	3 cut(s)	377, 1015, 1138
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	834
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	3 cut(s)	377, 1015, 1138
BmsI	GCATC	7 cut(s)	154, 265, 381, 517, 660, 835, 1167
BpmI	CTGGAG	1 cut(s)	1138
Bpu10I	CCTNAGC	2 cut(s)	390, 1059
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	1138
BsaBI	GATNNNNATC	1 cut(s)	699
BsaJI	CCNNGG	4 cut(s)	157, 295, 733, 1013
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 328, 618
Bse1I	ACTGG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	2 cut(s)	377, 1015
BseDI	CCNNGG	4 cut(s)	157, 295, 733, 1013
BseGI	GGATG	5 cut(s)	47, 145, 372, 608, 1103
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	3 cut(s)	57, 328, 618
BseMII	CTCAG	2 cut(s)	522, 1073
BseNI	ACTGG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	2 cut(s)	175, 1137
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	57, 328, 618
BsmAI	GTCTC	2 cut(s)	366, 936
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	834
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	605
Bsp143I	GATC	4 cut(s)	124, 487, 697, 1009
BspCNI	CTCAG	2 cut(s)	523, 1072
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	3 cut(s)	385, 955, 1093
BspPI	GGATC	1 cut(s)	1004
BspQI	GCTCTTC	2 cut(s)	75, 636
BspT104I	TTCGAA	1 cut(s)	545
BsrGI	TGTACA	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	4 cut(s)	157, 295, 733, 1013
BssMI	GATC	4 cut(s)	124, 487, 697, 1009
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	2 cut(s)	377, 1015
Bst4CI	ACNGT	2 cut(s)	707, 734
Bst6I	CTCTTC	4 cut(s)	75, 101, 636, 659
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstAUI	TGTACA	1 cut(s)	605
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	143, 478, 948
BstDEI	CTNAG	4 cut(s)	390, 531, 857, 1059
BstDSI	CCRYGG	2 cut(s)	157, 733
BstF5I	GGATG	5 cut(s)	47, 145, 372, 608, 1103
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	174, 750, 904
BstKTI	GATC	4 cut(s)	127, 490, 700, 1012
BstMAI	GTCTC	2 cut(s)	366, 936
BstMBI	GATC	4 cut(s)	124, 487, 697, 1009
BstNI	CCWGG	2 cut(s)	377, 1015
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	3 cut(s)	375, 1013, 1136
BstSFI	CTRYAG	3 cut(s)	381, 951, 1089
BstUI	CGCG	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	1009
BstYI	RGATCY	1 cut(s)	1009
BtgI	CCRYGG	2 cut(s)	157, 733
BtsCI	GGATG	5 cut(s)	47, 145, 372, 608, 1103
BtsI	GCAGTG	2 cut(s)	462, 999
BtsIMutI	CAGTG	3 cut(s)	462, 712, 999
Cac8I	GCNNGC	3 cut(s)	143, 478, 948
CaiI	CAGNNNCTG	3 cut(s)	461, 959, 998
CfoI	GCGC	3 cut(s)	174, 750, 904
Cfr13I	GGNCC	1 cut(s)	180
Cfr42I	CCGCGG	1 cut(s)	160
Csp6I	GTAC	7 cut(s)	154, 504, 606, 681, 687, 730, 1074
CviAII	CATG	2 cut(s)	943, 1036
CviQI	GTAC	7 cut(s)	154, 504, 606, 681, 687, 730, 1074
DdeI	CTNAG	4 cut(s)	390, 531, 857, 1059
DpnI	GATC	4 cut(s)	126, 489, 699, 1011
DpnII	GATC	4 cut(s)	124, 487, 697, 1009
Eam1104I	CTCTTC	4 cut(s)	75, 101, 636, 659
EarI	CTCTTC	4 cut(s)	75, 101, 636, 659
EciI	GGCGGA	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	483, 1020
Eco88I	CYCGRG	1 cut(s)	834
EcoRII	CCWGG	2 cut(s)	375, 1013
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	946, 1039
FalI	AAGNNNNNCTT	2 cut(s)	1014, 1046
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	942, 1035
FbaI	TGATCA	2 cut(s)	124, 697
FokI	GGATG	5 cut(s)	34, 132, 359, 595, 1110
FspBI	CTAG	6 cut(s)	264, 287, 501, 678, 690, 1071
FspI	TGCGCA	1 cut(s)	749
GlaI	GCGC	3 cut(s)	173, 749, 903
GsuI	CTGGAG	1 cut(s)	1138
HapII	CCGG	2 cut(s)	175, 1137
HhaI	GCGC	3 cut(s)	174, 750, 904
Hin1II	CATG	2 cut(s)	946, 1039
Hin6I	GCGC	3 cut(s)	172, 748, 902
HinP1I	GCGC	3 cut(s)	172, 748, 902
HinfI	GANTC	5 cut(s)	14, 353, 557, 923, 1064
HpaII	CCGG	2 cut(s)	175, 1137
HphI	GGTGA	1 cut(s)	1032
Hpy166II	GTNNAC	1 cut(s)	1103
Hpy188III	TCNNGA	3 cut(s)	491, 655, 1061
Hpy8I	GTNNAC	1 cut(s)	1103
HpyAV	CCTTC	2 cut(s)	571, 1088
HpyCH4III	ACNGT	2 cut(s)	707, 734
HpyCH4V	TGCA	7 cut(s)	383, 551, 848, 946, 953, 976, 1091
HpyF3I	CTNAG	4 cut(s)	390, 531, 857, 1059
Hsp92II	CATG	2 cut(s)	946, 1039
HspAI	GCGC	3 cut(s)	172, 748, 902
Ksp22I	TGATCA	2 cut(s)	124, 697
KspI	CCGCGG	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	124, 487, 697, 1009
LguI	GCTCTTC	2 cut(s)	75, 636
LmnI	GCTCC	1 cut(s)	64
LweI	GCATC	7 cut(s)	154, 265, 381, 517, 660, 835, 1167
MaeI	CTAG	6 cut(s)	264, 287, 501, 678, 690, 1071
MaeIII	GTNAC	3 cut(s)	457, 994, 1038
MalI	GATC	4 cut(s)	126, 489, 699, 1011
MboI	GATC	4 cut(s)	124, 487, 697, 1009
MflI	RGATCY	1 cut(s)	1009
MmeI	TCCRAC	3 cut(s)	174, 750, 959
MroXI	GAANNNNTTC	2 cut(s)	218, 582
MseI	TTAA	1 cut(s)	1180
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	5 cut(s)	159, 386, 398, 404, 821
MspI	CCGG	2 cut(s)	175, 1137
MspR9I	CCNGG	3 cut(s)	377, 1015, 1138
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	2 cut(s)	377, 1015
MvnI	CGCG	1 cut(s)	159
NciI	CCSGG	1 cut(s)	1138
NdeII	GATC	4 cut(s)	124, 487, 697, 1009
NlaIII	CATG	2 cut(s)	946, 1039
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	3 cut(s)	457, 994, 1038
NsbI	TGCGCA	1 cut(s)	749
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	1 cut(s)	545
PaeR7I	CTCGAG	1 cut(s)	834
PciSI	GCTCTTC	2 cut(s)	75, 636
PctI	GAATGC	1 cut(s)	553
PdmI	GAANNNNTTC	2 cut(s)	218, 582
PfeI	GAWTC	5 cut(s)	14, 353, 557, 923, 1064
Psp6I	CCWGG	2 cut(s)	375, 1013
PspGI	CCWGG	2 cut(s)	375, 1013
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	180
PspXI	VCTCGAGB	1 cut(s)	834
PstI	CTGCAG	3 cut(s)	385, 955, 1093
PstNI	CAGNNNCTG	3 cut(s)	461, 959, 998
PsuI	RGATCY	1 cut(s)	1009
PvuII	CAGCTG	2 cut(s)	386, 821
RsaI	GTAC	7 cut(s)	155, 505, 607, 682, 688, 731, 1075
RsaNI	GTAC	7 cut(s)	154, 504, 606, 681, 687, 730, 1074
RseI	CAYNNNNRTG	1 cut(s)	705
SacII	CCGCGG	1 cut(s)	160
SapI	GCTCTTC	2 cut(s)	75, 636
SaqAI	TTAA	1 cut(s)	1180
Sau3AI	GATC	4 cut(s)	124, 487, 697, 1009
Sau96I	GGNCC	1 cut(s)	180
ScaI	AGTACT	3 cut(s)	505, 682, 1075
ScrFI	CCNGG	3 cut(s)	377, 1015, 1138
SfaNI	GCATC	7 cut(s)	154, 265, 381, 517, 660, 835, 1167
SfcI	CTRYAG	3 cut(s)	381, 951, 1089
Sfr274I	CTCGAG	1 cut(s)	834
Sfr303I	CCGCGG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	545
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	834
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	834
SmoI	CTYRAG	1 cut(s)	834
SpeI	ACTAGT	4 cut(s)	500, 677, 689, 1070
SspMI	CTAG	6 cut(s)	264, 287, 501, 678, 690, 1071
StyD4I	CCNGG	3 cut(s)	375, 1013, 1136
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	707, 734
TaqI	TCGA	3 cut(s)	368, 545, 835
TatI	WGTACW	5 cut(s)	503, 605, 680, 686, 1073
TauI	GCSGC	5 cut(s)	93, 141, 162, 281, 401
TfiI	GAWTC	5 cut(s)	14, 353, 557, 923, 1064
Tru1I	TTAA	1 cut(s)	1180
Tru9I	TTAA	1 cut(s)	1180
TscAI	CASTG	3 cut(s)	462, 712, 999
TseFI	GTSAC	3 cut(s)	457, 994, 1038
Tsp45I	GTSAC	3 cut(s)	457, 994, 1038
TspDTI	ATGAA	1 cut(s)	1127
TspGWI	ACGGA	1 cut(s)	953
TspRI	CASTG	3 cut(s)	462, 712, 999
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	4 cut(s)	7, 218, 592, 1045
XceI	RCATGY	1 cut(s)	946
XhoI	CTCGAG	1 cut(s)	834
XmnI	GAANNNNTTC	2 cut(s)	218, 582
XspI	CTAG	6 cut(s)	264, 287, 501, 678, 690, 1071
ZrmI	AGTACT	3 cut(s)	505, 682, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.