MD02G1225500.v1.1

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0020376
Physical Location & Seq
Forward (+)
26427832 .. 26428305
474 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1225500.v1.1.491

Sequence Viewer

Length: 474 bp
ATGCAGCTTTCTTTCCAAAAGGTTTTAAAAAGGGAAACGTTTTCTGTGGTTTTGGAGATGCAAATCTATACAGCCCTGGTTGCTAGTTTTGCTGCAACTGTAGGTCTTTTTGCAAGTGGAGAATGGAGGAGTTTACATGGGGAAATGGTAAACTATGGCAAGGGACGAGTTTCTTACGTGATGACCTTAGTTTGGACAGCTGTGGCTTGGCAAGTTTGTTCTGTTGGTGTTGTAGGCTTAATTTTCGTGGTGTCTTCTCTCTTCTCCAATGTAATTAGTACTCTCTCTTTGGCTGTTACTCCTATAGCCGCTGTGATAATCCTCCATGACAAGATGAACGGTGTCAAGGTAATTGCTATGCTTCTGGCTCTTTGGGGTTTCGCCTCTTATGTTTATCAGAACTATCTTGATGACTCTAAAGCAAGAAGAAGACAAGCTGATGCTAGGGAACCACAAAATGATTCCTCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

158

Amino Acids

17.33

Weight (kDa)

9.13

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 1 - 140 4e-58 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020376)

Species Orthologous Gene IDs
malus_domestica MD02G1225500.v1.1
rosa_chinensis RchiOBHm_Chr7g0208091
rosa_rugosa Rorug05G0007800
rosa_samantha Rh5BG098300 Rh5CG110500 Rh5DG097600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 309
AclI AACGTT 1 cut(s) 38
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 192
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 3 cut(s) 7, 200, 437
AluI AGCT 3 cut(s) 7, 200, 437
ApeKI GCWGC 2 cut(s) 4, 92
BbsI GAAGAC 2 cut(s) 246, 436
BbvI GCAGC 2 cut(s) 16, 79
BciT130I CCWGG 1 cut(s) 77
BfaI CTAG 2 cut(s) 84, 444
BfmI CTRYAG 2 cut(s) 99, 303
BisI GCNGC 3 cut(s) 5, 93, 309
BlsI GCNGC 3 cut(s) 6, 94, 310
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 2 cut(s) 48, 430
BpiI GAAGAC 2 cut(s) 246, 436
BsaAI YACGTR 1 cut(s) 178
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 16, 79
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 177
BspACI CCGC 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 100, 341
Bst6I CTCTTC 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 80, 89
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 2 cut(s) 99, 303
BstV1I GCAGC 2 cut(s) 16, 79
BstV2I GAAGAC 2 cut(s) 246, 436
Csp6I GTAC 1 cut(s) 279
CviAII CATG 2 cut(s) 137, 326
CviJI RGCY 9 cut(s) 7, 74, 200, 206, 237, 293, 308, 368, 437
CviKI_1 RGCY 9 cut(s) 7, 74, 200, 206, 237, 293, 308, 368, 437
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 1 cut(s) 187
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 140, 329
FaiI YATR 7 cut(s) 69, 138, 156, 305, 327, 359, 390
FaqI GGGAC 1 cut(s) 177
FatI CATG 2 cut(s) 136, 325
Fnu4HI GCNGC 3 cut(s) 5, 93, 309
Fsp4HI GCNGC 3 cut(s) 5, 93, 309
FspBI CTAG 2 cut(s) 84, 444
GluI GCNGC 3 cut(s) 5, 93, 309
Hin1II CATG 2 cut(s) 140, 329
HinfI GANTC 2 cut(s) 413, 461
Hpy166II GTNNAC 2 cut(s) 134, 151
Hpy188I TCNGA 1 cut(s) 399
Hpy188III TCNNGA 1 cut(s) 407
Hpy8I GTNNAC 2 cut(s) 134, 151
HpyCH4III ACNGT 2 cut(s) 100, 341
HpyCH4IV ACGT 2 cut(s) 38, 177
HpyCH4V TGCA 4 cut(s) 4, 61, 95, 113
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 89
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 2 cut(s) 38, 177
Hsp92II CATG 2 cut(s) 140, 329
LpnPI CCDG 3 cut(s) 62, 89, 350
Lsp1109I GCAGC 2 cut(s) 16, 79
LweI GCATC 2 cut(s) 48, 430
MaeI CTAG 2 cut(s) 84, 444
MaeII ACGT 2 cut(s) 38, 177
MaeIII GTNAC 1 cut(s) 295
MboII GAAGA 4 cut(s) 246, 253, 438, 441
MluCI AATT 3 cut(s) 240, 273, 351
MlyI GAGTC 1 cut(s) 407
MnlI CCTC 3 cut(s) 120, 332, 394
MseI TTAA 3 cut(s) 26, 239, 472
MspA1I CMGCKG 2 cut(s) 200, 311
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 80, 89
NlaIII CATG 2 cut(s) 140, 329
NlaIV GGNNCC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 3 cut(s) 6, 94, 310
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
Ppu21I YACGTR 1 cut(s) 178
Psp1406I AACGTT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 450
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 3 cut(s) 26, 239, 472
SatI GCNGC 3 cut(s) 5, 93, 309
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 77
SetI ASST 9 cut(s) 9, 24, 41, 106, 180, 188, 202, 351, 439
SfaNI GCATC 2 cut(s) 48, 430
SfcI CTRYAG 2 cut(s) 99, 303
Sse9I AATT 3 cut(s) 240, 273, 351
SsiI CCGC 1 cut(s) 309
SspMI CTAG 2 cut(s) 84, 444
StyD4I CCNGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 100, 341
TaiI ACGT 2 cut(s) 41, 180
TasI AATT 3 cut(s) 240, 273, 351
TatI WGTACW 1 cut(s) 278
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 26, 239, 472
Tru9I TTAA 3 cut(s) 26, 239, 472
TseI GCWGC 2 cut(s) 4, 92
TspDTI ATGAA 1 cut(s) 350
XspI CTAG 2 cut(s) 84, 444
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.