Rh5CG110500

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0020376
Physical Location & Seq
Forward (+)
9107642 .. 9109480
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG110500.1

Sequence Viewer

Length: 327 bp
ATGGGAGCATTAGAACCTCAAGAACGGCAGCTGAGCATCAAGGTTCAAGCAGAAGCAAATGAAGCAAACTCACTACCATATATTCCTAACCAGCTGCCTTGGTGCAGAGGTTTTAACTGGTGGCTTAGAATGTCGATTTATACAGTCTTTGTCCTCGCTGGCCAGGCAATTGCAACACTATTGGGAAGACAGTACTATGACAAAGGTGGTAAAAGCAACTGGCTTGCTACACTAGACTACCTCGATGATCGTAAGTCCAAGAGTGAGAAGAAAGATGCCAATGATGAAGTTTCTAAAGCTGTCCCTGTGGAAAACATTAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

108

Amino Acids

12.28

Weight (kDa)

6.24

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 43 - 78 5.8e-08 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020376)

Species Orthologous Gene IDs
malus_domestica MD02G1225500.v1.1
rosa_chinensis RchiOBHm_Chr7g0208091
rosa_rugosa Rorug05G0007800
rosa_samantha Rh5BG098300 Rh5CG110500 Rh5DG097600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 160
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 31, 94, 299
AluI AGCT 3 cut(s) 31, 94, 299
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 28, 94
AseI ATTAAT 1 cut(s) 318
BalI TGGCCA 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 40, 81
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 164
BfaI CTAG 1 cut(s) 233
BisI GCNGC 2 cut(s) 29, 95
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 2 cut(s) 30, 96
BmcAI AGTACT 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 45, 265
BpiI GAAGAC 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 98
Bse1I ACTGG 2 cut(s) 122, 224
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 2 cut(s) 122, 224
BseXI GCAGC 2 cut(s) 40, 81
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 162
BslFI GGGAC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 247
Bsp1720I GCTNAGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 24
BsrI ACTGG 2 cut(s) 122, 224
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 145, 192
BstC8I GCNNGC 2 cut(s) 160, 225
BstDEI CTNAG 2 cut(s) 32, 125
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 62, 164
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 40, 81
BstV2I GAAGAC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 160, 225
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 6 cut(s) 31, 94, 124, 162, 223, 299
CviKI_1 RGCY 6 cut(s) 31, 94, 124, 162, 223, 299
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 32, 125
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaiI YATR 4 cut(s) 79, 81, 141, 198
FaqI GGGAC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 29, 95
Fsp4HI GCNGC 2 cut(s) 29, 95
FspBI CTAG 1 cut(s) 233
GluI GCNGC 2 cut(s) 29, 95
HaeIII GGCC 1 cut(s) 162
Hpy188III TCNNGA 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 145, 192
HpyCH4V TGCA 2 cut(s) 105, 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 164
HpyF3I CTNAG 2 cut(s) 32, 125
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 7 cut(s) 103, 104, 144, 149, 176, 205, 318
Lsp1109I GCAGC 2 cut(s) 40, 81
LweI GCATC 2 cut(s) 45, 265
MaeI CTAG 1 cut(s) 233
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 198, 280
MfeI CAATTG 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 1 cut(s) 168
MluNI TGGCCA 1 cut(s) 162
MnlI CCTC 4 cut(s) 27, 101, 164, 251
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 2 cut(s) 114, 318
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 2 cut(s) 31, 94
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 62, 164
NdeII GATC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 30, 96
PshBI ATTAAT 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PvuII CAGCTG 2 cut(s) 31, 94
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 2 cut(s) 114, 318
SatI GCNGC 2 cut(s) 29, 95
Sau3AI GATC 1 cut(s) 247
ScaI AGTACT 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 164
SetI ASST 8 cut(s) 19, 33, 45, 96, 112, 208, 243, 301
SfaNI GCATC 2 cut(s) 45, 265
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 1 cut(s) 168
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 2 cut(s) 145, 192
TaqI TCGA 2 cut(s) 134, 243
TasI AATT 1 cut(s) 168
TatI WGTACW 1 cut(s) 192
Tru1I TTAA 2 cut(s) 114, 318
Tru9I TTAA 2 cut(s) 114, 318
TseI GCWGC 2 cut(s) 28, 94
TspDTI ATGAA 2 cut(s) 75, 300
VspI ATTAAT 1 cut(s) 318
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.