MD02G1229300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0022327
Physical Location & Seq
Reverse (-)
27247480 .. 27248543
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1229300.v1.1.491

Sequence Viewer

Length: 276 bp
ATGCAGATTTTGGTATGGTTCTCTGCTTCTTCCTTCCATAATGTTTCACTAAACTTGCATTGGATTTGGGTATGGTTCTTGAAGTTCTTGGAGTCTAGTTGCTGTTCTTGGATTGGTGATCTTGCTATAATCTTTTCTGGTGGCGTTGTTGGAATCAGGTCGTTACATTTCCTTGTTTCTTCAATTTTGCACATAAGGTGTTTGTGTTTTTGGGTCAATGAAATTTTATGCAGTGTTGGTGAGAATTATGAGCAGCCTCTCCATAAATGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

6.48

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022327)

Species Orthologous Gene IDs
malus_domestica MD02G1229300.v1.1 MD14G1102900.v1.1
pyrus_communis pycom03g19490 pycom16g17440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 82, 183
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 128, 251
BbvI GCAGC 1 cut(s) 265
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 268
Bsp143I GATC 1 cut(s) 118
BssMI GATC 1 cut(s) 118
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 265
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 238
CviJI RGCY 1 cut(s) 256
CviKI_1 RGCY 1 cut(s) 256
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
FaiI YATR 8 cut(s) 16, 39, 73, 128, 194, 229, 249, 264
Fnu4HI GCNGC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 254
HinfI GANTC 2 cut(s) 92, 153
HphI GGTGA 2 cut(s) 128, 251
Hpy188III TCNNGA 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 4, 58, 190, 231
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 2 cut(s) 123, 142
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 162
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 21, 171
MluCI AATT 3 cut(s) 183, 222, 244
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 1 cut(s) 267
NdeII GATC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 153
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 1 cut(s) 101
SetI ASST 2 cut(s) 161, 200
SgeI CNNG 9 cut(s) 67, 91, 100, 108, 120, 134, 150, 169, 185
Sse9I AATT 3 cut(s) 183, 222, 244
SspMI CTAG 1 cut(s) 96
TasI AATT 3 cut(s) 183, 222, 244
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 222
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.