Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0022327

Physical Location & Seq

Genomic Coordinates Forward (+)

20077028 .. 20077634

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTTCACAAAAGTGACCTCCAAATTTGCTTCTTTGTGCAAATCATTTTCTAAGGAAAGTTTTCAGCAATTTCCCATGGACAACACATACATGCCTGAGGTCATGAAACGATTATCTCTTGCACGTCAAATAGACAAGATTATGCGGAAAGATTCCCAGGAGAAATCGAAGAAAAAAAATTGGTTCGAAAGAAATGCAGAATTGATTGAATTGGTTGTGGACTATGATGACAATGAGGAGGAAAGGGTGAAAAGTCATAAGCAAAAGAAAGCCAACTTCGGCTGGTATGTCACATTCCTGCTATATCAATTCAAAGAATTGACTAAGCAAAAATTTGGTGATGGCAGTGACTCGGGAGAAAAGAAAAGAAGCAAATCGGTAGTTATTGGTCAAGATCTACAGATTTTGGTATGGTTTTCTGCTTCTTCCATCCATAATGTTTCACTACACTTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

153

Amino Acids

17.93

Weight (kDa)

9.43

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022327)

Species	Orthologous Gene IDs
malus_domestica	MD02G1229300.v1.1 MD14G1102900.v1.1
pyrus_communis	pycom03g19490 pycom16g17440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	23, 332
AgsI	TTSAA	2 cut(s)	209, 313
AjiI	CACGTC	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	352
ApoI	RAATTY	2 cut(s)	23, 332
Asp700I	GAANNNNTTC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	259, 350
AsuII	TTCGAA	1 cut(s)	186
AvaI	CYCGRG	1 cut(s)	352
AxyI	CCTNAGG	1 cut(s)	96
BccI	CCATC	2 cut(s)	335, 437
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	158
BfaI	CTAG	1 cut(s)	457
BfmI	CTRYAG	1 cut(s)	398
BglII	AGATCT	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	352
BmgBI	CACGTC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	158
Bpu14I	TTCGAA	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	75, 156
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	75, 156
BseGI	GGATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	251
BsiHKCI	CYCGRG	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	352
Bsp119I	TTCGAA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	394
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	102
BspT104I	TTCGAA	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	75, 156
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	51, 96, 324
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	429
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
Bsu36I	CCTNAGG	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	102
CviAII	CATG	3 cut(s)	76, 91, 103
CviJI	RGCY	2 cut(s)	272, 282
CviKI_1	RGCY	2 cut(s)	272, 282
DdeI	CTNAG	3 cut(s)	51, 96, 324
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	79, 94, 106
FatI	CATG	3 cut(s)	75, 90, 102
FokI	GGATG	1 cut(s)	416
FspBI	CTAG	1 cut(s)	457
Hin1II	CATG	3 cut(s)	79, 94, 106
HinfI	GANTC	2 cut(s)	152, 350
HphI	GGTGA	2 cut(s)	259, 350
Hpy166II	GTNNAC	2 cut(s)	6, 220
Hpy188III	TCNNGA	3 cut(s)	103, 354, 392
Hpy8I	GTNNAC	2 cut(s)	6, 220
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	4 cut(s)	39, 122, 197, 454
HpyF3I	CTNAG	3 cut(s)	51, 96, 324
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	3 cut(s)	79, 94, 106
Kzo9I	GATC	1 cut(s)	394
LpnPI	CCDG	5 cut(s)	108, 143, 170, 268, 311
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	3 cut(s)	13, 289, 347
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	2 cut(s)	181, 417
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	8 cut(s)	23, 68, 178, 200, 209, 308, 317, 332
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	4 cut(s)	28, 91, 229, 232
MroXI	GAANNNNTTC	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	11, 89
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	79, 94, 106
NmuCI	GTSAC	3 cut(s)	13, 289, 347
NspI	RCATGY	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	11
PagI	TCATGA	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	2 cut(s)	11, 89
Sau3AI	GATC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	3 cut(s)	20, 102, 127
SfcI	CTRYAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	11, 89
Sse9I	AATT	8 cut(s)	23, 68, 178, 200, 209, 308, 317, 332
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	167, 186
TasI	AATT	8 cut(s)	23, 68, 178, 200, 209, 308, 317, 332
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	3 cut(s)	13, 289, 347
Tsp45I	GTSAC	3 cut(s)	13, 289, 347
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	2 cut(s)	23, 332
XceI	RCATGY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.