Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015347

Physical Location & Seq

Genomic Coordinates Forward (+)

4998013 .. 4999024

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1062000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCTGCAGCGCTGGAGTGCTGGTCGGGCCGAGCGAGCGCGGACGAGGACATGGTGGAGCAGGGGCTGATGAGGACGCATGACAGATCGGAGGGTGCGACGGCGGAGTCGGAGAGTTCGACTGGCGCCGGAGTGAAGGATTCGTCCGCTATGCAGAAGAAGCTGCAGAGGCTGAGCCGGAACGTGTCCGAGGCCATCGCGTCGCTCAAGAACTCGCTGAATCTAGACTCGGCGAGTGACTCGGCGACGGCGTCGTTTGGAAAGATCGAGAGCTCGAGGAAGTTGGTGTGGGGGAGTGTGGTGCGAAACCTCACGCAGCTCTACCCTGGCAGTCAGCTGCCGGAGAAGCTCGTCTCCAACATTCGCAAGCATTACGATTCTCTTCCCCTCAGTTATGCTCAGGCGGGGTTCGAAATGAAAGAAGTGTTTCTTCATATAAAATTGATAGAGCAGGCATCATTGGATGGGCATCCTGCAATGTTGATTCAAGAGGTGTCTGACATGGAGGCTCTGGGGTCTGTGTTCAAGCTCACATTTGCTTGTAATTGTTCGATTTCATGGCCATTGATGTCCGTTGCACTCGATAATGATTTGATTTTCTACAAGAAGATACAGATTTTTGAGAAGAAAGGGTGTACTATTGGTGTTAAACCGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

220

Amino Acids

23.87

Weight (kDa)

6.11

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7377	PF24093	133 - 216	6.2e-40	Domain of unknown function (DUF7377)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58520
fragaria_vesca	FvH4_3g39380
malus_domestica	MD03G1062000.v1.1 MD11G1065600.v1.1
prunus_persica	Prupe.6G051800_v2.0.a1 Prupe.6G051800_v2.0.a1
pyrus_communis	pycom03g04940 pycom11g05560
rosa_chinensis	RchiOBHm_Chr5g0070921
rosa_laevigata	RLG00000036171
rosa_multiflora	Rmu_sc0002944.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010280
rosa_rugosa	Rorug05G0408500
rosa_samantha	Rh5AG464700 Rh5BG483400
rosa_wichuraiana	Rw5G043230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	2 cut(s)	41, 200
AciI	CCGC	4 cut(s)	41, 104, 147, 404
AcoI	YGGCCR	1 cut(s)	560
AcyI	GRCGYC	2 cut(s)	126, 251
AfaI	GTAC	1 cut(s)	637
AfeI	AGCGCT	1 cut(s)	12
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	488, 526
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	6 cut(s)	163, 273, 319, 337, 349, 529
AluI	AGCT	6 cut(s)	163, 273, 319, 337, 349, 529
Alw21I	GWGCWC	1 cut(s)	275
Alw26I	GTCTC	1 cut(s)	358
AlwNI	CAGNNNCTG	2 cut(s)	67, 172
Ama87I	CYCGRG	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	3 cut(s)	28, 192, 560
ApeKI	GCWGC	5 cut(s)	5, 8, 163, 316, 337
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	3 cut(s)	13, 41, 128
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	654
AsuII	TTCGAA	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	275
BbvI	GCAGC	4 cut(s)	20, 150, 324, 328
BccI	CCATC	2 cut(s)	203, 458
BceAI	ACGGC	2 cut(s)	117, 264
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	2 cut(s)	6, 164
BfoI	RGCGCY	2 cut(s)	14, 129
BisI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	5 cut(s)	7, 10, 165, 318, 339
Bme1390I	CCNGG	2 cut(s)	327, 654
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	2 cut(s)	327, 654
BmsI	GCATC	2 cut(s)	464, 478
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	126, 251
BsaJI	CCNNGG	2 cut(s)	189, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	189, 325
BseGI	GGATG	2 cut(s)	469, 469
BseJI	GATNNNNATC	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	164, 403, 413
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	20, 150, 324, 328
Bsh1236I	CGCG	2 cut(s)	41, 200
BshFI	GGCC	3 cut(s)	30, 194, 562
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	4 cut(s)	129, 178, 341, 653
BsmAI	GTCTC	1 cut(s)	358
BsmBI	CGTCTC	1 cut(s)	358
BsnI	GGCC	3 cut(s)	30, 194, 562
BsoBI	CYCGRG	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	86, 264
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	4 cut(s)	41, 104, 147, 404
BspANI	GGCC	3 cut(s)	30, 194, 562
BspCNI	CTCAG	3 cut(s)	165, 402, 412
BspFNI	CGCG	2 cut(s)	41, 200
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	2 cut(s)	10, 168
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	189, 325
BssMI	GATC	2 cut(s)	86, 264
BssNI	GRCGYC	2 cut(s)	126, 251
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	2 cut(s)	126, 251
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	3 cut(s)	37, 368, 453
BstDEI	CTNAG	3 cut(s)	173, 389, 399
BstF5I	GGATG	2 cut(s)	469, 469
BstFNI	CGCG	2 cut(s)	41, 200
BstH2I	RGCGCY	2 cut(s)	14, 129
BstHHI	GCGC	3 cut(s)	13, 41, 128
BstKTI	GATC	2 cut(s)	89, 267
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	86, 264
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 36, 160, 169, 346
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	325, 652
BstSFI	CTRYAG	2 cut(s)	6, 164
BstUI	CGCG	2 cut(s)	41, 200
BstV1I	GCAGC	4 cut(s)	20, 150, 324, 328
BsuRI	GGCC	3 cut(s)	30, 194, 562
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	469, 469
Cac8I	GCNNGC	3 cut(s)	37, 368, 453
CaiI	CAGNNNCTG	2 cut(s)	67, 172
CfoI	GCGC	3 cut(s)	13, 41, 128
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	3 cut(s)	85, 189, 240
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	4 cut(s)	52, 80, 502, 558
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	3 cut(s)	173, 389, 399
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	2 cut(s)	88, 266
DpnII	GATC	2 cut(s)	86, 264
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	12
Eco53kI	GAGCTC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	275
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	4 cut(s)	55, 83, 505, 561
FaiI	YATR	8 cut(s)	53, 81, 152, 396, 435, 437, 503, 559
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	4 cut(s)	51, 79, 501, 557
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
FokI	GGATG	2 cut(s)	456, 476
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
FspBI	CTAG	1 cut(s)	224
GlaI	GCGC	3 cut(s)	12, 40, 127
GluI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
GsuI	CTGGAG	1 cut(s)	35
HaeII	RGCGCY	2 cut(s)	14, 129
HaeIII	GGCC	3 cut(s)	30, 194, 562
HapII	CCGG	4 cut(s)	129, 178, 341, 653
HgaI	GACGC	3 cut(s)	85, 189, 240
HhaI	GCGC	3 cut(s)	13, 41, 128
Hin1I	GRCGYC	2 cut(s)	126, 251
Hin1II	CATG	4 cut(s)	55, 83, 505, 561
Hin6I	GCGC	3 cut(s)	11, 39, 126
HinP1I	GCGC	3 cut(s)	11, 39, 126
HinfI	GANTC	7 cut(s)	107, 140, 220, 227, 239, 377, 484
HpaII	CCGG	4 cut(s)	129, 178, 341, 653
Hpy166II	GTNNAC	1 cut(s)	636
Hpy188I	TCNGA	4 cut(s)	91, 112, 190, 499
Hpy188III	TCNNGA	4 cut(s)	208, 224, 268, 488
Hpy8I	GTNNAC	1 cut(s)	636
Hpy99I	CGWCG	4 cut(s)	103, 205, 250, 256
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	8, 154, 166, 476, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 36, 160, 169, 346
HpyF3I	CTNAG	3 cut(s)	173, 389, 399
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	2 cut(s)	126, 251
Hsp92II	CATG	4 cut(s)	55, 83, 505, 561
HspAI	GCGC	3 cut(s)	11, 39, 126
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	2 cut(s)	86, 264
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	4 cut(s)	20, 150, 324, 328
LweI	GCATC	2 cut(s)	464, 478
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	88, 266
MboI	GATC	2 cut(s)	86, 264
MboII	GAAGA	5 cut(s)	169, 374, 422, 619, 637
MhlI	GDGCHC	1 cut(s)	275
MlsI	TGGCCA	1 cut(s)	562
MluCI	AATT	2 cut(s)	440, 544
MluNI	TGGCCA	1 cut(s)	562
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	3 cut(s)	116, 221, 233
MmeI	TCCRAC	2 cut(s)	90, 381
Mox20I	TGGCCA	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	562
MseI	TTAA	1 cut(s)	648
Msp20I	TGGCCA	1 cut(s)	562
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	4 cut(s)	129, 178, 341, 653
MspR9I	CCNGG	2 cut(s)	327, 654
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	2 cut(s)	41, 200
MwoI	GCNNNNNNNGC	5 cut(s)	27, 36, 160, 169, 346
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	654
NdeII	GATC	2 cut(s)	86, 264
NlaIII	CATG	4 cut(s)	55, 83, 505, 561
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	3 cut(s)	56, 209, 221
NmuCI	GTSAC	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	411
PaeR7I	CTCGAG	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	4 cut(s)	32, 95, 116, 248
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	140, 220, 377, 484
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	7, 10, 165, 318, 339
PleI	GAGTC	3 cut(s)	115, 221, 233
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	3 cut(s)	115, 221, 233
Psp124BI	GAGCTC	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	28
PspXI	VCTCGAGB	1 cut(s)	274
PstI	CTGCAG	2 cut(s)	10, 168
PstNI	CAGNNNCTG	2 cut(s)	67, 172
PsyI	GACNNNGTC	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
Sau3AI	GATC	2 cut(s)	86, 264
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	3 cut(s)	116, 221, 233
ScrFI	CCNGG	2 cut(s)	327, 654
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	9 cut(s)	165, 186, 275, 312, 321, 339, 351, 495, 531
SfaNI	GCATC	2 cut(s)	464, 478
SfcI	CTRYAG	2 cut(s)	6, 164
SfoI	GGCGCC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	206, 274
SmoI	CTYRAG	2 cut(s)	206, 274
Sse9I	AATT	2 cut(s)	440, 544
SsiI	CCGC	4 cut(s)	41, 104, 147, 404
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	325, 652
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	6 cut(s)	119, 267, 275, 411, 551, 582
TasI	AATT	2 cut(s)	440, 544
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	4 cut(s)	140, 220, 377, 484
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	5 cut(s)	5, 8, 163, 316, 337
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	422, 431, 546
TspGWI	ACGGA	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.