Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015347

Physical Location & Seq

Genomic Coordinates Forward (+)

3868963 .. 3870143

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTGCAGCGCTGGAGTGCTGGTCCGGCCGAGCGAGTGCGGACGAGGACATGGTGGAGCAGGGGCTGATGAGGACGCATGACAGATCGGAGGGTGCGACGGCGGAGCCGGAGAGTTCGACTGGCGCCGGAGTGAAGGATTCGTCCGCGATGCAGAAGAAGCTGCAGAGGCTCAGCCGGAACGTATCCGAGGCCATCGCGTCGCTCAAGAACTCGCTGAATCTCGACTCGGCGAGTGACTCGGCGACGGCGTCGTTTGGAAAGATCGAGAGCTCGAGGAAGTTGGTGTGGGGGAGTGTGGTGCGAAACCTCACGCAGCTCTATCCTGGCAGTCAGCTGCCGGAGAAGCTTGTCTCCAACATTCGCAAGCATTACGATTCTCTTCCCCTCAGTTATGCTCAGGCGGGGTTCGAAATGAAAGAAGTGTTTCTTCATATAAAATTGATAGAGGAGGCATCATTGGATGGGCATCCTGCAATGTTGATTCAAGAGGTGTCTGACCTGGAGGCTCAGGGGTCTGTGTTCAAGCTCACATTTGCTTGTAATTGTTCGATTTCATGGCCATTGATGTCCGGTGCACTCGATAATGATTTGATTTGCTACAAGAAGATACAGATTTTTGAGAAAAAAGGGTGTACTATTGGTGTTGTTCTTCTTATGGTTGAAGCTGGAGAAGATAAATTGTTCAGAAACCGGGTTGAAAATGCTTTGAAGTCGGCCATAAGGAAGCCCAAATCGAGCACAGTGAAGCTCGCATTTGGGCTATGTGGGTGTCAAGAAGAGAATATTAAGGGGAGGGAGGTGGAGGATATTGACGACGACATTGGTGAACAAAACTATAGGAATGGGTTTGAGATTTCCAGCCACATGATTCAGCTTCCGAATCCTCTACCCACTTCGTCAGTTGTTGTATCAGTAGACGAATGGCAGACAATCCAATCTGGCGGGGATGGGATAGGAAAGTGGCTGTTGAACTCTGATAATTTCGACTTTGTTGATCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

336

Amino Acids

36.75

Weight (kDa)

5.02

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58520
fragaria_vesca	FvH4_3g39380
malus_domestica	MD03G1062000.v1.1 MD11G1065600.v1.1
prunus_persica	Prupe.6G051800_v2.0.a1 Prupe.6G051800_v2.0.a1
pyrus_communis	pycom03g04940 pycom11g05560
rosa_chinensis	RchiOBHm_Chr5g0070921
rosa_laevigata	RLG00000036171
rosa_multiflora	Rmu_sc0002944.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010280
rosa_rugosa	Rorug05G0408500
rosa_samantha	Rh5AG464700 Rh5BG483400
rosa_wichuraiana	Rw5G043230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	918
AccII	CGCG	2 cut(s)	149, 200
AciI	CCGC	5 cut(s)	41, 104, 147, 404, 945
AcoI	YGGCCR	3 cut(s)	28, 560, 717
AcyI	GRCGYC	2 cut(s)	126, 251
AfaI	GTAC	1 cut(s)	637
AfeI	AGCGCT	1 cut(s)	12
AgsI	TTSAA	6 cut(s)	488, 526, 665, 701, 712, 973
AjnI	CCWGG	2 cut(s)	325, 501
AluBI	AGCT	9 cut(s)	163, 273, 319, 337, 349, 529, 668, 751, 877
AluI	AGCT	9 cut(s)	163, 273, 319, 337, 349, 529, 668, 751, 877
Alw21I	GWGCWC	3 cut(s)	275, 580, 743
Alw26I	GTCTC	1 cut(s)	358
Alw44I	GTGCAC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	4 cut(s)	28, 192, 560, 717
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	5 cut(s)	5, 8, 163, 316, 337
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	2 cut(s)	13, 128
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	695
AsuHPI	GGTGA	1 cut(s)	839
AsuII	TTCGAA	1 cut(s)	411
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	275
Bbv12I	GWGCWC	3 cut(s)	275, 580, 743
BbvI	GCAGC	4 cut(s)	20, 150, 324, 328
BccI	CCATC	3 cut(s)	203, 458, 944
BceAI	ACGGC	2 cut(s)	117, 264
BciT130I	CCWGG	2 cut(s)	327, 503
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	997
BcnI	CCSGG	1 cut(s)	695
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	3 cut(s)	6, 164, 838
BfoI	RGCGCY	2 cut(s)	14, 129
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	5 cut(s)	7, 10, 165, 318, 339
Bme1390I	CCNGG	3 cut(s)	327, 503, 695
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	108, 127
BmrFI	CCNGG	3 cut(s)	327, 503, 695
BmsI	GCATC	3 cut(s)	141, 464, 478
BpmI	CTGGAG	3 cut(s)	35, 524, 690
Bpu10I	CCTNAGC	2 cut(s)	399, 510
Bpu1102I	GCTNAGC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	126, 251
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	327, 503
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	469, 469, 955
BseJI	GATNNNNATC	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	187, 403, 413, 524
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	580
BseX3I	CGGCCG	1 cut(s)	28
BseXI	GCAGC	4 cut(s)	20, 150, 324, 328
Bsh1236I	CGCG	2 cut(s)	149, 200
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	30, 194, 562, 719
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	3 cut(s)	275, 580, 743
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	7 cut(s)	27, 110, 129, 178, 341, 573, 694
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	4 cut(s)	30, 194, 562, 719
BsoBI	CYCGRG	1 cut(s)	274
Bsp119I	TTCGAA	1 cut(s)	411
Bsp1286I	GDGCHC	3 cut(s)	275, 580, 743
Bsp143I	GATC	3 cut(s)	86, 264, 997
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	5 cut(s)	41, 104, 147, 404, 945
BspANI	GGCC	4 cut(s)	30, 194, 562, 719
BspCNI	CTCAG	4 cut(s)	186, 402, 412, 523
BspFNI	CGCG	2 cut(s)	149, 200
BspLI	GGNNCC	2 cut(s)	108, 127
BspMAI	CTGCAG	2 cut(s)	10, 168
BspT104I	TTCGAA	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	86, 264, 997
BssNI	GRCGYC	2 cut(s)	126, 251
Bst2UI	CCWGG	2 cut(s)	327, 503
Bst4CI	ACNGT	1 cut(s)	745
Bst6I	CTCTTC	2 cut(s)	387, 774
BstACI	GRCGYC	2 cut(s)	126, 251
BstBI	TTCGAA	1 cut(s)	411
BstC8I	GCNNGC	2 cut(s)	368, 753
BstDEI	CTNAG	4 cut(s)	173, 389, 399, 510
BstF5I	GGATG	3 cut(s)	469, 469, 955
BstFNI	CGCG	2 cut(s)	149, 200
BstH2I	RGCGCY	2 cut(s)	14, 129
BstHHI	GCGC	2 cut(s)	13, 128
BstKTI	GATC	3 cut(s)	89, 267, 1000
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	86, 264, 997
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 160, 169, 346
BstNI	CCWGG	2 cut(s)	327, 503
BstSCI	CCNGG	3 cut(s)	325, 501, 693
BstSFI	CTRYAG	3 cut(s)	6, 164, 838
BstSLI	GKGCMC	1 cut(s)	580
BstUI	CGCG	2 cut(s)	149, 200
BstV1I	GCAGC	4 cut(s)	20, 150, 324, 328
BstZI	CGGCCG	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	30, 194, 562, 719
BtgZI	GCGATG	2 cut(s)	164, 181
BtsCI	GGATG	3 cut(s)	469, 469, 955
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	368, 753
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	2 cut(s)	13, 128
Cfr13I	GGNCC	1 cut(s)	24
CseI	GACGC	3 cut(s)	85, 189, 240
Csp6I	GTAC	1 cut(s)	636
CviAII	CATG	4 cut(s)	52, 80, 558, 868
CviQI	GTAC	1 cut(s)	636
DdeI	CTNAG	4 cut(s)	173, 389, 399, 510
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	88, 266, 999
DpnII	GATC	3 cut(s)	86, 264, 997
EaeI	YGGCCR	3 cut(s)	28, 560, 717
EagI	CGGCCG	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	387, 774
EarI	CTCTTC	2 cut(s)	387, 774
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	28
Eco53kI	GAGCTC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	325, 501
EcoT38I	GRGCYC	1 cut(s)	275
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	4 cut(s)	55, 83, 561, 871
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	4 cut(s)	51, 79, 557, 867
FauI	CCCGC	2 cut(s)	397, 938
FbaI	TGATCA	1 cut(s)	997
FblI	GTMKAC	1 cut(s)	918
Fnu4HI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
FokI	GGATG	3 cut(s)	456, 476, 962
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
GlaI	GCGC	2 cut(s)	12, 127
GluI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
GsuI	CTGGAG	3 cut(s)	35, 524, 690
HaeII	RGCGCY	2 cut(s)	14, 129
HaeIII	GGCC	4 cut(s)	30, 194, 562, 719
HapII	CCGG	7 cut(s)	27, 110, 129, 178, 341, 573, 694
HgaI	GACGC	3 cut(s)	85, 189, 240
HhaI	GCGC	2 cut(s)	13, 128
Hin1I	GRCGYC	2 cut(s)	126, 251
Hin1II	CATG	4 cut(s)	55, 83, 561, 871
Hin6I	GCGC	2 cut(s)	11, 126
HinP1I	GCGC	2 cut(s)	11, 126
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	8 cut(s)	140, 220, 227, 239, 377, 484, 871, 883
HpaII	CCGG	7 cut(s)	27, 110, 129, 178, 341, 573, 694
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	4 cut(s)	578, 636, 830, 919
Hpy188I	TCNGA	7 cut(s)	91, 190, 499, 689, 882, 979, 1002
Hpy188III	TCNNGA	5 cut(s)	208, 224, 268, 488, 776
Hpy8I	GTNNAC	4 cut(s)	578, 636, 830, 919
Hpy99I	CGWCG	5 cut(s)	103, 205, 250, 256, 821
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	745
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	8, 154, 166, 476, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 160, 169, 346
HpyF3I	CTNAG	4 cut(s)	173, 389, 399, 510
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	2 cut(s)	126, 251
Hsp92II	CATG	4 cut(s)	55, 83, 561, 871
HspAI	GCGC	2 cut(s)	11, 126
KasI	GGCGCC	1 cut(s)	125
Ksp22I	TGATCA	1 cut(s)	997
Kzo9I	GATC	3 cut(s)	86, 264, 997
LmnI	GCTCC	2 cut(s)	58, 106
Lsp1109I	GCAGC	4 cut(s)	20, 150, 324, 328
LweI	GCATC	3 cut(s)	141, 464, 478
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	3 cut(s)	88, 266, 999
MboI	GATC	3 cut(s)	86, 264, 997
MboII	GAAGA	7 cut(s)	169, 374, 422, 619, 644, 686, 791
MhlI	GDGCHC	3 cut(s)	275, 580, 743
MlsI	TGGCCA	1 cut(s)	562
MluCI	AATT	4 cut(s)	440, 544, 680, 982
MluNI	TGGCCA	1 cut(s)	562
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	221, 233
MmeI	TCCRAC	1 cut(s)	381
Mox20I	TGGCCA	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	562
MseI	TTAA	1 cut(s)	789
Msp20I	TGGCCA	1 cut(s)	562
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	7 cut(s)	27, 110, 129, 178, 341, 573, 694
MspR9I	CCNGG	3 cut(s)	327, 503, 695
MvaI	CCWGG	2 cut(s)	327, 503
MvnI	CGCG	2 cut(s)	149, 200
MwoI	GCNNNNNNNGC	4 cut(s)	27, 160, 169, 346
NarI	GGCGCC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	695
NdeII	GATC	3 cut(s)	86, 264, 997
NlaIII	CATG	4 cut(s)	55, 83, 561, 871
NlaIV	GGNNCC	2 cut(s)	108, 127
NmeAIII	GCCGAG	3 cut(s)	56, 209, 221
NmuCI	GTSAC	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	411
PaeR7I	CTCGAG	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 248
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	6 cut(s)	140, 220, 377, 484, 871, 883
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	5 cut(s)	7, 10, 165, 318, 339
PleI	GAGTC	2 cut(s)	221, 233
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	2 cut(s)	221, 233
Psp124BI	GAGCTC	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	325, 501
PspGI	CCWGG	2 cut(s)	325, 501
PspN4I	GGNNCC	2 cut(s)	108, 127
PspPI	GGNCC	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	274
PstI	CTGCAG	2 cut(s)	10, 168
PstNI	CAGNNNCTG	1 cut(s)	67
PsyI	GACNNNGTC	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	637
RsaNI	GTAC	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	5 cut(s)	6, 9, 164, 317, 338
Sau3AI	GATC	3 cut(s)	86, 264, 997
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	2 cut(s)	221, 233
ScrFI	CCNGG	3 cut(s)	327, 503, 695
SduI	GDGCHC	3 cut(s)	275, 580, 743
SfaNI	GCATC	3 cut(s)	141, 464, 478
SfcI	CTRYAG	3 cut(s)	6, 164, 838
SfoI	GGCGCC	1 cut(s)	127
Sfr274I	CTCGAG	1 cut(s)	274
SfuI	TTCGAA	1 cut(s)	411
SinI	GGWCC	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	206, 274
SmoI	CTYRAG	2 cut(s)	206, 274
Sse9I	AATT	4 cut(s)	440, 544, 680, 982
SsiI	CCGC	5 cut(s)	41, 104, 147, 404, 945
SspDI	GGCGCC	1 cut(s)	125
SspI	AATATT	1 cut(s)	787
SstI	GAGCTC	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	325, 501, 693
TaaI	ACNGT	1 cut(s)	745
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	9 cut(s)	119, 225, 267, 275, 411, 551, 582, 737, 987
TasI	AATT	4 cut(s)	440, 544, 680, 982
TatI	WGTACW	1 cut(s)	635
TfiI	GAWTC	6 cut(s)	140, 220, 377, 484, 871, 883
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	5 cut(s)	5, 8, 163, 316, 337
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	3 cut(s)	422, 431, 546
TspRI	CASTG	1 cut(s)	750
Tth111I	GACNNNGTC	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	576
VpaK11BI	GGWCC	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	918
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.