Rorug05G0408500

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002217
Physical Location & Seq
Forward (+)
56399003 .. 56402430
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0408500.1

Sequence Viewer

Length: 330 bp
ATGAGCCAGCCAAAACCGATAATGGCTTATAGATCGAATAGAGGCGAGCAGGAGTGGAGGGTCGGGAGTATCGATAGAAACCAGATGGATATGTTGATCCAAATCCGGGGCTCTCCTGGCCAGCTCCGCGAATTGTTTCAAGGTTCACCAGGGGGTCATTATGGAACAACAAGATCAATTAGAGGAAACGATCGTTCAATCTGTGAACCTGACTATTCCAGTAACTCAGGGAAGAAAGAAGGACTGAAGGAGAAGAAGAAGAGGTTCTTGCCTTATTGGTTCTATTCACTGGATTATGTAGTGATATATGAGTTTCCGGGGTGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

109

Amino Acids

12.63

Weight (kDa)

9.36

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 127
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 140, 198
AjnI CCWGG 2 cut(s) 115, 148
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 118
Asp700I GAANNNNTTC 2 cut(s) 135, 263
AsuC2I CCSGG 2 cut(s) 107, 318
AsuHPI GGTGA 1 cut(s) 138
BalI TGGCCA 1 cut(s) 120
BanII GRGCYC 1 cut(s) 113
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 2 cut(s) 117, 150
BcnI CCSGG 2 cut(s) 107, 318
Bme1390I CCNGG 4 cut(s) 107, 117, 150, 318
BmrFI CCNGG 4 cut(s) 107, 117, 150, 318
BpuMI CCSGG 2 cut(s) 107, 318
Bsa29I ATCGAT 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 3 cut(s) 106, 149, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 219, 294
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 2 cut(s) 117, 150
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 3 cut(s) 106, 149, 317
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 2 cut(s) 219, 294
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 1 cut(s) 120
BshVI ATCGAT 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 106, 317
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 4 cut(s) 32, 96, 173, 190
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 239
BspDI ATCGAT 1 cut(s) 72
BspFNI CGCG 1 cut(s) 129
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 2 cut(s) 219, 294
BssECI CCNNGG 3 cut(s) 106, 149, 317
BssMI GATC 4 cut(s) 32, 96, 173, 190
Bst2UI CCWGG 2 cut(s) 117, 150
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 3 cut(s) 8, 47, 122
BstDEI CTNAG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 4 cut(s) 35, 99, 176, 193
BstMBI GATC 4 cut(s) 32, 96, 173, 190
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 117, 126
BstNI CCWGG 2 cut(s) 117, 150
BstSCI CCNGG 4 cut(s) 105, 115, 148, 316
BstUI CGCG 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 8, 47, 122
ClaI ATCGAT 1 cut(s) 72
CviJI RGCY 6 cut(s) 6, 10, 26, 111, 120, 124
CviKI_1 RGCY 6 cut(s) 6, 10, 26, 111, 120, 124
DdeI CTNAG 1 cut(s) 226
DpnI GATC 4 cut(s) 34, 98, 175, 192
DpnII GATC 4 cut(s) 32, 96, 173, 190
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco24I GRGCYC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 115, 148
EcoT38I GRGCYC 1 cut(s) 113
FaiI YATR 6 cut(s) 30, 92, 162, 297, 307, 309
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FriOI GRGCYC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 106, 317
HpaII CCGG 2 cut(s) 106, 317
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 146, 206
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 146, 206
HpyAV CCTTC 2 cut(s) 233, 241
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 126
HpyF3I CTNAG 1 cut(s) 226
Kzo9I GATC 4 cut(s) 32, 96, 173, 190
LmnI GCTCC 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 221
MalI GATC 4 cut(s) 34, 98, 175, 192
MboI GATC 4 cut(s) 32, 96, 173, 190
MboII GAAGA 4 cut(s) 244, 265, 268, 271
MfeI CAATTG 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 113
MlsI TGGCCA 1 cut(s) 120
MluCI AATT 3 cut(s) 131, 177, 325
MluNI TGGCCA 1 cut(s) 120
MnlI CCTC 4 cut(s) 35, 51, 176, 255
Mox20I TGGCCA 1 cut(s) 120
MroXI GAANNNNTTC 2 cut(s) 135, 263
MscI TGGCCA 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 120
MspI CCGG 2 cut(s) 106, 317
MspR9I CCNGG 4 cut(s) 107, 117, 150, 318
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 2 cut(s) 117, 150
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 117, 126
NciI CCSGG 2 cut(s) 107, 318
NdeII GATC 4 cut(s) 32, 96, 173, 190
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 135, 263
Ple19I CGATCG 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 115, 148
PspGI CCWGG 2 cut(s) 115, 148
PvuI CGATCG 1 cut(s) 193
Sau3AI GATC 4 cut(s) 32, 96, 173, 190
ScrFI CCNGG 4 cut(s) 107, 117, 150, 318
SduI GDGCHC 1 cut(s) 113
SetI ASST 4 cut(s) 126, 145, 211, 266
Sse9I AATT 3 cut(s) 131, 177, 325
SsiI CCGC 1 cut(s) 127
StyD4I CCNGG 4 cut(s) 105, 115, 148, 316
TaqI TCGA 2 cut(s) 35, 72
TasI AATT 3 cut(s) 131, 177, 325
TscAI CASTG 1 cut(s) 294
TspRI CASTG 1 cut(s) 294
XmnI GAANNNNTTC 2 cut(s) 135, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.