Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0024329

Physical Location & Seq

Genomic Coordinates Forward (+)

12957648 .. 12959555

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1131400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACCTGGTTTACCACAGCCTGTGCACTTTGGTTTACCTTCATACCAGCACTTCCCATAGTGCAACCTGTCACACCACTTACAATCACCCTGAGCATTGTTTTGCTTCTGGACATAATTAGGCCTATGATCCCAATTCCTTTGAATATTGTTCTGTCTCTGAGGATAATTTGGTTTGTGATCCCAATTCCTTTGAATATTGCTCTGTCTCTGAGGATAATTTGGTGGTTAAGTGGGGACAGTATCGGTGTTGTTAGAGTGGGACGGGCCCGGCGATCCAACAATTCCAACAGTTGTGAGCTCACTGGTCAAATACCATTTTGGTTATCTAAGCTCAAGAAGCTAGAGATCTTGAATTTGGATTTTAACAGAATCACAGGGTCAGTCCCTAATTGGTTATGGACTCTTCCTAGGCTCTTTTACATAAATTTAGGGCCCAACCAAATTTCAGGTGAATTTCCGAAGGAACTTTGCAGACTAGCGATGTTGCTATATGAAGAAACTTCAGCTCAAGTGTATCAGAACTACCTTGAATTGCCTATGTTCATCCAAATTCGCGACGATGCAAAAGCGTTACGGTACAATTATTTATGTTTCTTCCCACCATCTATATACCTATACAACAATAGCATCAGTGGCAATATACCAACTGAAATTGGCCAACTGCGGCTTCTCCATAAGTTGGACCTTGGCTTCAACAACTTCTCTGGAAGCATCCCAGACCAAATATCCAACCTCAAAAACTTGGATACATTGGATCTCTCCAAAAATCATCTGACTGGAAAAATCCCAGAATCATTGAAGGGCCTTAATTTCTTGTCATATTTGAATGTCTCATACAATGATCTTGAAGGGCCAATACCAACAAGCACTCAGCTTCGAAGCTTCCAATCCTCTGCATTTGAGGGGAATCCGAAACTTTGCGGTGCCCCGCTACCAAACGAATGCAGAACAACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

321

Amino Acids

36.27

Weight (kDa)

8.7

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	106 - 149	2.4e-07	Leucine rich repeat
LRR_8	PF13855	224 - 283	2.6e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024329)

Species	Orthologous Gene IDs
malus_domestica	MD03G1131400.v1.1
rosa_rugosa	Rorug05G0468600 Rorug05G0549600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	926
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccII	CGCG	1 cut(s)	558
AciI	CCGC	3 cut(s)	667, 924, 932
AclWI	GGATC	4 cut(s)	124, 175, 270, 765
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	5 cut(s)	355, 427, 444, 455, 552
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	1 cut(s)	682
AgsI	TTSAA	8 cut(s)	145, 196, 355, 533, 697, 802, 829, 851
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	2 cut(s)	654, 686
AluBI	AGCT	6 cut(s)	301, 334, 343, 509, 877, 885
AluI	AGCT	6 cut(s)	301, 334, 343, 509, 877, 885
Alw21I	GWGCWC	2 cut(s)	28, 303
Alw26I	GTCTC	3 cut(s)	162, 213, 838
Alw44I	GTGCAC	1 cut(s)	24
AlwI	GGATC	4 cut(s)	124, 175, 270, 765
AoxI	GGCC	6 cut(s)	122, 267, 434, 658, 805, 854
ApaI	GGGCCC	2 cut(s)	271, 438
ApaLI	GTGCAC	1 cut(s)	24
ApoI	RAATTY	5 cut(s)	355, 427, 444, 455, 552
AspA2I	CCTAGG	1 cut(s)	410
AspS9I	GGNCC	7 cut(s)	267, 268, 434, 435, 685, 805, 854
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	79, 464
AsuII	TTCGAA	1 cut(s)	880
AvaII	GGWCC	1 cut(s)	685
AvrII	CCTAGG	1 cut(s)	410
BaeGI	GKGCMC	4 cut(s)	28, 271, 438, 931
BalI	TGGCCA	1 cut(s)	660
BanI	GGYRCC	1 cut(s)	926
BanII	GRGCYC	3 cut(s)	271, 303, 438
BarI	GAAGNNNNNNTAC	2 cut(s)	843, 875
Bbv12I	GWGCWC	2 cut(s)	28, 303
BccI	CCATC	1 cut(s)	613
BciT130I	CCWGG	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	742
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	3 cut(s)	162, 213, 838
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	4 cut(s)	344, 411, 479, 957
BfuI	GTATCC	1 cut(s)	742
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	1 cut(s)	668
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	669
Bme1390I	CCNGG	2 cut(s)	7, 271
Bme18I	GGWCC	1 cut(s)	685
BmgT120I	GGNCC	7 cut(s)	267, 268, 434, 435, 685, 805, 854
BmiI	GGNNCC	3 cut(s)	269, 436, 928
BmrFI	CCNGG	2 cut(s)	7, 271
BmsI	GCATC	3 cut(s)	553, 639, 723
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	880
BpuEI	CTTGAG	2 cut(s)	320, 495
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	410, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	310, 784
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	2 cut(s)	410, 688
BseGI	GGATG	2 cut(s)	546, 714
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMII	CTCAG	4 cut(s)	83, 152, 203, 887
BseNI	ACTGG	2 cut(s)	310, 784
BseSI	GKGCMC	4 cut(s)	28, 271, 438, 931
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	6 cut(s)	124, 269, 436, 660, 807, 856
BshNI	GGYRCC	1 cut(s)	926
BsiHKAI	GWGCWC	2 cut(s)	28, 303
BsiSI	CCGG	1 cut(s)	271
BslFI	GGGAC	3 cut(s)	251, 276, 371
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	3 cut(s)	162, 213, 838
BsmFI	GGGAC	3 cut(s)	251, 276, 371
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	6 cut(s)	124, 269, 436, 660, 807, 856
Bsp119I	TTCGAA	1 cut(s)	880
Bsp120I	GGGCCC	2 cut(s)	267, 434
Bsp1286I	GDGCHC	5 cut(s)	28, 271, 303, 438, 931
Bsp143I	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
Bsp68I	TCGCGA	1 cut(s)	558
BspACI	CCGC	3 cut(s)	667, 924, 932
BspANI	GGCC	6 cut(s)	124, 269, 436, 660, 807, 856
BspCNI	CTCAG	4 cut(s)	84, 153, 204, 886
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	269, 436, 928
BspPI	GGATC	4 cut(s)	124, 175, 270, 765
BspT104I	TTCGAA	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	926
BsrI	ACTGG	2 cut(s)	310, 784
BssECI	CCNNGG	2 cut(s)	410, 688
BssMI	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
BssT1I	CCWWGG	2 cut(s)	410, 688
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	3 cut(s)	242, 293, 579
Bst6I	CTCTTC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	880
BstDEI	CTNAG	5 cut(s)	92, 161, 212, 330, 873
BstF5I	GGATG	2 cut(s)	546, 714
BstFNI	CGCG	1 cut(s)	558
BstKTI	GATC	6 cut(s)	132, 183, 278, 351, 760, 847
BstMAI	GTCTC	3 cut(s)	162, 213, 838
BstMBI	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 636
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	5, 269
BstSLI	GKGCMC	4 cut(s)	28, 271, 438, 931
BstUI	CGCG	1 cut(s)	558
BstX2I	RGATCY	2 cut(s)	348, 757
BstYI	RGATCY	2 cut(s)	348, 757
BsuI	GTATCC	1 cut(s)	742
BsuRI	GGCC	6 cut(s)	124, 269, 436, 660, 807, 856
BtgZI	GCGATG	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	546, 714
BtsIMutI	CAGTG	2 cut(s)	303, 640
BtuMI	TCGCGA	1 cut(s)	558
Cfr13I	GGNCC	7 cut(s)	267, 268, 434, 435, 685, 805, 854
CsiI	ACCWGGT	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	580
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	5 cut(s)	92, 161, 212, 330, 873
DpnI	GATC	6 cut(s)	131, 182, 277, 350, 759, 846
DpnII	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	410, 688
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	3 cut(s)	271, 303, 438
Eco47I	GGWCC	1 cut(s)	685
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	2 cut(s)	434, 805
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	410, 688
EcoT38I	GRGCYC	3 cut(s)	271, 303, 438
ErhI	CCWWGG	2 cut(s)	410, 688
FaqI	GGGAC	3 cut(s)	251, 276, 371
FauI	CCCGC	1 cut(s)	939
Fnu4HI	GCNGC	1 cut(s)	668
FokI	GGATG	2 cut(s)	533, 701
FriOI	GRGCYC	3 cut(s)	271, 303, 438
Fsp4HI	GCNGC	1 cut(s)	668
FspBI	CTAG	4 cut(s)	344, 411, 479, 957
GluI	GCNGC	1 cut(s)	668
HaeIII	GGCC	6 cut(s)	124, 269, 436, 660, 807, 856
HapII	CCGG	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	883
HinfI	GANTC	4 cut(s)	372, 403, 794, 910
HpaII	CCGG	1 cut(s)	271
HphI	GGTGA	2 cut(s)	79, 464
Hpy166II	GTNNAC	3 cut(s)	12, 26, 36
Hpy188I	TCNGA	6 cut(s)	162, 213, 462, 522, 777, 915
Hpy188III	TCNNGA	6 cut(s)	110, 337, 352, 557, 708, 848
Hpy8I	GTNNAC	3 cut(s)	12, 26, 36
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	4 cut(s)	49, 457, 796, 845
HpyCH4III	ACNGT	3 cut(s)	242, 293, 579
HpyCH4V	TGCA	6 cut(s)	26, 64, 474, 566, 899, 948
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 636
HpyF3I	CTNAG	5 cut(s)	92, 161, 212, 330, 873
Kzo9I	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
LweI	GCATC	3 cut(s)	553, 639, 723
MabI	ACCWGGT	1 cut(s)	5
MaeI	CTAG	4 cut(s)	344, 411, 479, 957
MaeIII	GTNAC	2 cut(s)	70, 573
MalI	GATC	6 cut(s)	131, 182, 277, 350, 759, 846
MboI	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
MboII	GAAGA	3 cut(s)	398, 509, 589
MflI	RGATCY	2 cut(s)	348, 757
MhlI	GDGCHC	5 cut(s)	28, 271, 303, 438, 931
MlsI	TGGCCA	1 cut(s)	660
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	4 cut(s)	303, 312, 663, 756
MnlI	CCTC	5 cut(s)	156, 207, 746, 898, 904
Mox20I	TGGCCA	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	3 cut(s)	230, 366, 810
Msp20I	TGGCCA	1 cut(s)	660
MspI	CCGG	1 cut(s)	271
MspR9I	CCNGG	2 cut(s)	7, 271
Mva1269I	GAATGC	1 cut(s)	950
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	2 cut(s)	340, 636
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
NlaIV	GGNNCC	3 cut(s)	269, 436, 928
NmuCI	GTSAC	1 cut(s)	70
NruI	TCGCGA	1 cut(s)	558
NspV	TTCGAA	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	950
PfeI	GAWTC	3 cut(s)	372, 794, 910
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	1 cut(s)	669
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	269, 436, 928
PspOMI	GGGCCC	2 cut(s)	267, 434
PspPI	GGNCC	7 cut(s)	267, 268, 434, 435, 685, 805, 854
PsuI	RGATCY	2 cut(s)	348, 757
RruI	TCGCGA	1 cut(s)	558
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	230, 366, 810
SatI	GCNGC	1 cut(s)	668
Sau3AI	GATC	6 cut(s)	129, 180, 275, 348, 757, 844
Sau96I	GGNCC	7 cut(s)	267, 268, 434, 435, 685, 805, 854
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	7, 271
SduI	GDGCHC	5 cut(s)	28, 271, 303, 438, 931
SexAI	ACCWGGT	1 cut(s)	5
SfaNI	GCATC	3 cut(s)	553, 639, 723
SfuI	TTCGAA	1 cut(s)	880
SinI	GGWCC	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	335, 510
SmoI	CTYRAG	2 cut(s)	335, 510
SpeI	ACTAGT	1 cut(s)	956
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	3 cut(s)	667, 924, 932
SspI	AATATT	2 cut(s)	148, 199
SspMI	CTAG	4 cut(s)	344, 411, 479, 957
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	5, 269
StyI	CCWWGG	2 cut(s)	410, 688
TaaI	ACNGT	3 cut(s)	242, 293, 579
TaqI	TCGA	1 cut(s)	880
TauI	GCSGC	1 cut(s)	670
TfiI	GAWTC	3 cut(s)	372, 794, 910
Tru1I	TTAA	3 cut(s)	230, 366, 810
Tru9I	TTAA	3 cut(s)	230, 366, 810
TscAI	CASTG	2 cut(s)	310, 640
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	3 cut(s)	31, 510, 535
TspRI	CASTG	2 cut(s)	310, 640
Van91I	CCANNNNNTGG	1 cut(s)	682
VneI	GTGCAC	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	5 cut(s)	355, 427, 444, 455, 552
XmaJI	CCTAGG	1 cut(s)	410
XspI	CTAG	4 cut(s)	344, 411, 479, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.