Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0024329

Physical Location & Seq

Genomic Coordinates Forward (+)

64509424 .. 64509791

Gene Structure 368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0468600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGGCGCAGACCTTGCAGCCCATGCTTAGTATGTATTGTGAGTACCGTGTAGCTTTGAAGAAGTTGATGGTTGAATATCAAGCCAGAATCCACGCCTTTGGTGAAGCTTACTTTGTCTTGATCATTCATTTCAATGTTGTTAGAAATTCGAAAAGTCCAATTGGAAGTACAGCAAGCCGAAACCGAGTTTACCATATTGTTATAGGAAGAGATACCGAATTCGCAATTGGAACTTCTAAGCAAAGAGTTTTGGCCATTCTCTCAACGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0043207 GO:0045087 GO:0048507 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

91

Amino Acids

10.41

Weight (kDa)

9.73

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024329)

Species	Orthologous Gene IDs
malus_domestica	MD03G1131400.v1.1
rosa_rugosa	Rorug05G0468600 Rorug05G0549600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	148, 221
AfaI	GTAC	2 cut(s)	47, 172
AgsI	TTSAA	3 cut(s)	61, 77, 136
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	56, 110
AluI	AGCT	2 cut(s)	56, 110
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	148, 221
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	116
AsuII	TTCGAA	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	123
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	152
BssMI	GATC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	205
BstAPI	GCANNNNNTGC	2 cut(s)	16, 25
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	29, 240
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 25
BstV1I	GCAGC	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	46, 171
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	6 cut(s)	22, 56, 86, 110, 180, 257
CviKI_1	RGCY	6 cut(s)	22, 56, 86, 110, 180, 257
CviQI	GTAC	2 cut(s)	46, 171
DdeI	CTNAG	2 cut(s)	29, 240
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	221
FaeI	CATG	1 cut(s)	28
FaiI	YATR	4 cut(s)	26, 35, 198, 206
FatI	CATG	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	20
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	90
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 25
HpyF3I	CTNAG	2 cut(s)	29, 240
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	1 cut(s)	123
LpnPI	CCDG	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	31
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	73, 222
MfeI	CAATTG	2 cut(s)	162, 228
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	4 cut(s)	148, 162, 221, 228
MluNI	TGGCCA	1 cut(s)	257
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	257
MunI	CAATTG	2 cut(s)	162, 228
MwoI	GCNNNNNNNGC	2 cut(s)	16, 25
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	47, 172
RsaNI	GTAC	2 cut(s)	46, 171
RseI	CAYNNNNRTG	1 cut(s)	135
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	123
SetI	ASST	3 cut(s)	17, 58, 112
SfuI	TTCGAA	1 cut(s)	152
SgeI	CNNG	9 cut(s)	28, 37, 62, 95, 99, 107, 133, 189, 200
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	4 cut(s)	148, 162, 221, 228
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	1 cut(s)	152
TasI	AATT	4 cut(s)	148, 162, 221, 228
TatI	WGTACW	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	119
XapI	RAATTY	2 cut(s)	148, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.