MD03G1133800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
13379462 .. 13379972
511 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1133800.v1.1.491

Sequence Viewer

Length: 150 bp
ATGCGTCATCGGTGTATGGTGCGAGATCCTACCATTGAAGCCGAGAGCTTGAGCTCTCAATCTCTAACCCAGGTGATGTTTCTATCACTGTATTGTGTTATTGAGTTTTTTAAATCCTGTTGTGTGTTGCAAGTTTTGTGGTTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.76

Weight (kDa)

6.51

Isoelectric Point (pI)

67.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024340)

Species Orthologous Gene IDs
malus_domestica MD03G1133800.v1.1
pyrus_communis pycom01g00580 pycom14g15140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 2 cut(s) 48, 54
AluI AGCT 2 cut(s) 48, 54
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 20
AsuHPI GGTGA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 25
BspPI GGATC 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 90
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 86
CspCI CAANNNNNGTGG 1 cut(s) 119
CviJI RGCY 3 cut(s) 41, 48, 54
CviKI_1 RGCY 3 cut(s) 41, 48, 54
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
DraI TTTAAA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 56
FaiI YATR 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 56
FspEI CC 9 cut(s) 2, 42, 46, 55, 56, 82, 83, 124, 130
HphI GGTGA 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 56, 83, 130
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 144
MseI TTAA 2 cut(s) 111, 143
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
NdeII GATC 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PsuI RGATCY 1 cut(s) 25
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 111, 143
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 56
SetI ASST 3 cut(s) 50, 56, 75
SgeI CNNG 7 cut(s) 35, 55, 61, 82, 83, 129, 143
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 144
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 90
TasI AATT 1 cut(s) 144
Tru1I TTAA 2 cut(s) 111, 143
Tru9I TTAA 2 cut(s) 111, 143
TscAI CASTG 1 cut(s) 93
TspRI CASTG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.