pycom01g00580

Belongs to the helicase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
620248 .. 626925
6678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00580.5

Sequence Viewer

Length: 4422 bp
ATGAAACCACCCACTAACGTGGGAGTAAATGCATTCAAAATAAAAATATGGTTAAATACTTTAGCTTCTTTTGGTTCAATTGTAATTTATGAAATTCTTAAAGGACAATTTATGATAGATATAGATAATGCAAATTGTGAATTAGGTAGTCAAATGGTCTACAACTGTTTTAATTCCATTATGTTGCAAGCTAGCAAAGTAGAAGGACTACAATTGTATAGACCAATTGATTTAATGTATGTCCTCCTTGCACCTGATTTGAAAATTTTACGTTTTAACGATAAAGACAAAATAAAGGGTAAAGTAATAGCACTAGGATTGATATTTTACTTTTCATTAAAATTTCTTTTTTTAATTCATAAACAAAAAAAATGTAGTTTTACTATATCCTCCCTTGAAAAACACAGTGGAATTCTAATGAAAATCCGATTACCTCACCTCTCGCGCCCATCAATTCCCTCCAAATCCACGGCAATAGGCACGGCTCAACGCCAACACACTTGGGAATCCAAATACCCTTTTGTAGTTTTCTTTTCTTTCTTTTTTTTTGGAAAGTGGGATCCAAAAGGATCAAATGACACACCCCGACCTGAAATGTCCACTAGGATTCTGAAATCGAACTGTGTTGGCCGACACCTAGAAGGTGAAGAAGCCATAAAGTATAGTGATGTGAAAAATGTGAATAAATTTAAACCTAAAGTTCACATGCGACGTCAGAGCATAACGTCCACACCAAGATTTACCAATAATCCTCGTCGGTACGAAAGTTCTGCTACTAGAACCTGGAAGGGGCGCAAAACAGAAAACAATTTCCCAGAAAATAATAATACAAACGTAGATAGAAATCATACTCGAGAGTACGAAAAACCAAGTATGTGCCATGTCAAGTATCTCAACAATGAAATAAGTAAGCCAGGTGAAATAAATCAATGTAAAATGATATGTCATTCATCTACCAATTCCTGCACACGAGTCGGAACCACCTATGGTGGTTTGTATGACAGGTTAGGTGTAAATAAATACGCTCAAGTGCTACGATCACGTGAAGGCTGTGCAAAGTATGGCAAGTCACTTACGAGTCGGAACCACCTATGTGGTATGTACAACAGGTTGCCACCTGCCTTGGATCCAAGGCGAAGCTGTAACACCGGGGTCTTACCTAAGCATTTGCAGCTTCAAGCAACAATACACATAGCTATACTAACGCATATTCTAAACTATAAAGCAATTGACATGGCATCTAAAACGTATATATATGCGTATATAAAAACCAAAAGCCCACGCACAGATCATCTCACCGAGTCGAACCCGCCTTGCGGCCATTATATAATTATGAATAACCTATTAATGTATAAACGAGTTTTCCAAATTTTTTTTCGTGTTTTTCCCCTAAATTTAGGAGCTCATTTCAAGCTCAATTTTCAACCAAATTCAATGATTCAAAAGCCAACTAGAATGGCCAAATGGCCACAGGTCCAAGTTTTCCAGAATATGAGGAAATTTCATCCCAACTTCCAGAGTTCATTTCTAGCTCGATTCTCAATCAAATTTGATGATTCAAGAGCCATATTAAAGCTAGAATTATGGTCAAATGTTCACGACCAAAATTTCCAGAAATCTGGAAATTTCTTCCCGACTTTCATAACTAATTTCTATCATACCCTTAGGAGGCCCAATGGAGCTTGGAGTTGGCCGAAAAATGAGTTGAAAGTGACCAAATGGTCATGTTTCCTTTGCTGGAAAACTGGGGAATCTCCCCTCTCGAGATTTCTGTGCTATTCCGTTCATTCAAAACATGAACACAAGATCAATATCAAACCATGGGAATCAAATGAAGATCCGCTGGAAATGATGATGGTCACGATGCCTCTGCACAGTGAGGTAATGAATGAACTTTGGAAATGTGAAGGTGACTTGGTCGTGAGACTCACTAGAGTACAAGGGTTTGAGAGGAAGAGTCTAAGAGCAATTCCACCCCTAAAGACTTTGCGCCAGCACCCAGCGCATTTATTCACTCAAGCATCTCTACCCCTAAAAAAAAATATCAGAACCTTTCCACTAACCCTCTATACTCTTCCTCTAAACCCACAACCAGTTCTCTCTCTCTCTCTCTCTCTGTCTCTATTTTCTCTCCCTCTCTCTCTTTTCCAGCTCACTCTCGTGAGCTCTCCTTCTCCTTCCTCTTCAAAACCTTCAACAAATAAAAAACAAACTATTATTTTTGTAATCCCTGGAGCTCAAGGAACCCAACCATGGCCTTGCATGCGGCATCAGTGCATGGTGCGAGATCGATCTACCATTGAAGCCGAGAGCTTGAGCTCTCAATCTCTAACCCAGGTGATGTTTCTATCACTGTATTGGCTTAATTCCCTACATGTGATTCCGACAAAGGAAAACGGACAACTCCGACGAGTTCAAGGTCCAATCTCAGTGAAATCTCTTGCATTTCACCTGGGTAAGTTTTCAATCCTATTCTTATGGTTTCTAACATATAAATCGTTTTTTTTCAGATTTTCCGTTGAACTTGGGCCATCACTTTCAGGCCATTTGCCTTCTCCCTTCGTCGCTCCTTCCATCCCTGACATCAGCATGGCGTCATACAGCTTGGGCTGGGTGCCAGGCAATCTCGTGGGCTTGAAAGACTTCCCTAGGTGCCAGGCCATTTTTTTGGCTGTGTGCCGACCTATCCCACCCCCGGTAGAAGTGGATAAGGTGATGTGGCAGCCATCTAATGGAGGAGTGAGATGGGGAGATTCGAAAAAAAAAGAGATAAAAGTCTCCCGAAGGAGAGGGAGACACAGGATAGGGGAAAGGAATGTGGAGTCCTACGTGGGTGGTCAATTACCTAAAATAGCAAAATTACTAAAATTCCCTTCAACTTCATGCTCTCGTAAAATCTCCGTCGTAACTCCAAATTCAATTCTGCTTGCGCCTACGCATTCATACTTAACAGAAGTCAAAATCTTTGCCTCTAAGGGCATTTTCGTAAAATCACACCTTAAAAAATTTATAAAAATTCCTAGAAACAAACAAAGAATGGGCCTAAAACCAAAGAATACACAGAAAATGAGCCCAACAACAGTGAAGCCCAAACAAAAACGAACATCCAAGAAACATCCATTGTGCTCTCCACCACCAATCCGAGAAGTAGTTAGCCATCCAATCCTCCGTCCACCGTCGATCATCACTTCCACGGACTCCACCTGCACACAATCATCAATAAGAGATAGTCAGCGAAAGAGAAGCCAACCAACAAATCCAAAAATCCCTCTCAAGAGTATTAATACTATTGGGCTTCAATTTGAACTTACAAGAAAGCAGTTTCTAATGAAACTAAGTTTCTCTATCACCATAAACAAATCTCAATATCAGACAATACCACATGTAGGTATTTACCTTCCAGATTACGTCTTCATCAACTACAACCGTGTTAGTAAAAAATGGCTCCATAGTGGGCCAACAAGGTGTATTTACATGAAATGCAATATACAAAGAAATCTTGCTTCATTGCAGCTAATTATGATGTATATTTTTGTTCACCAATCAATTAACTATTTTTATTTGATTTTTAATTTTCTCACTATCGTTTGTAGATTGATAGACTTTGTGGGTATTGTGAATAATGTAAATCTTTGTTATGTAGCCTTTATATTATTTTGGTACCAATACTTAATGTTTTCATCTACTCTTTTTCTATTTACATCTACTTGCTATTGTTCATGGACTTTAGGTAGGAATTTCATTACTGTATGCAAACTGAAAACTAAAAACATGACAACTTGGGTGTGCATAATAAAGAAAAAGTCTCTCTTTTGCACAGGGCACGTGGTTCCCCTAATTAAAAAGATGCCTCTTCCACACACGCGAGTGCATGTGGAGAGACTACACCTCATCCCTAAAATCATTAAAAATTGTTTATTTCATCCATACTATTATATTCAAAGCTATTTTATTCAAATTTTCATCAATTTAAGTCACTTGACACACTTTAGAATTTACCCTCTAAAGTTAACTCCATACACTATTTTATTTTATGGAAAATTACCAATCTACTCTCAAATGTGTATCATGACACACCCCGACTGTAATCAAGGTATGCTGGCAGTCACGTCCAACCAAAGGTATCAATGGGTTCCTGAGCTTGCAAGGAACTCAAAAACACCAACAATGATCGATCCGTGCAAAAAATCTGAGAGGGAGGAAAGAGATAAGGGTCAACGAGATTGTTTGGGTGTGTGTGTGTGTCCAGATGGCAGTCCAAGGGTAAAATCGTCATTTCATGTCATCGATAAAATAATTCAGGATGGGTTTGAATATAGAAGCTTCGAATCTAAAATTAGGGATTTTCACTTAGATGATAATTCAAGAACTAAATTGATAACTCACCCTTTAAAAATAAACCCAAACCAGCCCAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1474

Amino Acids

170.17

Weight (kDa)

9.97

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024340)

Species Orthologous Gene IDs
malus_domestica MD03G1133800.v1.1
pyrus_communis pycom01g00580 pycom14g15140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3011
AarI CACCTGC 2 cut(s) 1126, 3212
AasI GACNNNNNNGTC 1 cut(s) 1720
AatII GACGTC 1 cut(s) 715
Acc36I ACCTGC 2 cut(s) 1126, 3212
Acc65I GGTACC 1 cut(s) 3660
AccB1I GGYRCC 3 cut(s) 2614, 2652, 3660
AccB7I CCANNNNNTGG 1 cut(s) 2732
AccI GTMKAC 1 cut(s) 159
AccII CGCG 2 cut(s) 445, 3865
AciI CCGC 4 cut(s) 1310, 1317, 1841, 2266
AclWI GGATC 7 cut(s) 554, 567, 577, 1121, 1134, 1832, 4169
AcoI YGGCCR 5 cut(s) 628, 1318, 1458, 1466, 1691
AcvI CACGTG 2 cut(s) 1043, 3826
AcyI GRCGYC 2 cut(s) 712, 2594
AfaI GTAC 5 cut(s) 761, 860, 1103, 1938, 3662
AfiI CCNNNNNNNGG 8 cut(s) 789, 1316, 1668, 2253, 2695, 2732, 3386, 4119
AflIII ACRYGT 2 cut(s) 2374, 3382
AjiI CACGTC 1 cut(s) 4110
AjnI CCWGG 7 cut(s) 782, 913, 2230, 2334, 2451, 2617, 2655
AjuI GAANNNNNNNTTGG 2 cut(s) 1359, 1391
AleI CACNNNNGTG 4 cut(s) 17, 1092, 2159, 3866
Alw21I GWGCWC 5 cut(s) 1405, 2168, 2239, 2321, 3128
Alw26I GTCTC 6 cut(s) 1918, 2124, 2782, 2788, 3810, 3874
AlwI GGATC 7 cut(s) 554, 567, 577, 1121, 1134, 1832, 4169
Ama87I CYCGRG 2 cut(s) 852, 1762
ApeKI GCWGC 3 cut(s) 1171, 2722, 3511
AseI ATTAAT 2 cut(s) 1346, 3282
Asp700I GAANNNNTTC 1 cut(s) 2642
Asp718I GGTACC 1 cut(s) 3660
AspA2I CCTAGG 1 cut(s) 2648
AspLEI GCGC 5 cut(s) 447, 795, 1992, 2005, 2932
AspS9I GGNCC 6 cut(s) 1474, 1671, 2420, 2528, 3040, 3455
AsuC2I CCSGG 2 cut(s) 1150, 2696
AsuII TTCGAA 2 cut(s) 2756, 4326
AsuNHI GCTAGC 1 cut(s) 191
AvaI CYCGRG 2 cut(s) 852, 1762
AvaII GGWCC 2 cut(s) 1474, 2420
AvrII CCTAGG 1 cut(s) 2648
AxyI CCTNAGG 1 cut(s) 1664
BaeGI GKGCMC 1 cut(s) 3825
BaeI ACNNNNGTAYC 2 cut(s) 751, 784
BalI TGGCCA 2 cut(s) 1460, 1468
BamHI GGATCC 2 cut(s) 559, 1126
BanI GGYRCC 3 cut(s) 2614, 2652, 3660
BanII GRGCYC 5 cut(s) 1405, 2168, 2239, 2321, 3074
BauI CACGAG 3 cut(s) 969, 2159, 2627
BbrPI CACGTG 2 cut(s) 1043, 3826
BbsI GAAGAC 1 cut(s) 3403
Bbv12I GWGCWC 5 cut(s) 1405, 2168, 2239, 2321, 3128
BbvI GCAGC 3 cut(s) 1183, 2734, 3523
BccI CCATC 9 cut(s) 457, 1849, 2539, 2582, 2734, 2739, 3165, 4244, 4298
BceAI ACGGC 2 cut(s) 486, 498
BcgI CGANNNNNNTGC 6 cut(s) 752, 786, 955, 989, 1852, 1886
BciT130I CCWGG 7 cut(s) 784, 915, 2232, 2336, 2453, 2619, 2657
BcnI CCSGG 2 cut(s) 1150, 2696
BcoDI GTCTC 6 cut(s) 1918, 2124, 2782, 2788, 3810, 3874
BfuAI ACCTGC 2 cut(s) 1126, 3212
BisI GCNGC 5 cut(s) 1172, 1318, 2267, 2723, 3512
BlnI CCTAGG 1 cut(s) 2648
BlsI GCNGC 5 cut(s) 1173, 1319, 2268, 2724, 3513
Bme1390I CCNGG 9 cut(s) 784, 915, 1150, 2232, 2336, 2453, 2619, 2657, 2696
Bme18I GGWCC 2 cut(s) 1474, 2420
BmeT110I CYCGRG 2 cut(s) 852, 1762
BmgBI CACGTC 1 cut(s) 4110
BmgT120I GGNCC 6 cut(s) 1474, 1671, 2420, 2528, 3040, 3455
BmrFI CCNGG 9 cut(s) 784, 915, 1150, 2232, 2336, 2453, 2619, 2657, 2696
BmrI ACTGGG 1 cut(s) 1755
BmsI GCATC 5 cut(s) 1247, 1854, 2030, 2278, 3837
BmtI GCTAGC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 1755
BpiI GAAGAC 1 cut(s) 3403
BpmI CTGGAG 1 cut(s) 2253
Bpu10I CCTNAGC 2 cut(s) 1161, 4137
Bpu14I TTCGAA 2 cut(s) 2756, 4326
BpuEI CTTGAG 5 cut(s) 1011, 2001, 2223, 2335, 3257
BpuMI CCSGG 2 cut(s) 1150, 2696
Bsa29I ATCGAT 3 cut(s) 2290, 4173, 4287
BsaAI YACGTR 3 cut(s) 1043, 2830, 3826
BsaBI GATNNNNATC 2 cut(s) 843, 1811
BsaHI GRCGYC 2 cut(s) 712, 2594
Bsc4I CCNNNNNNNGG 8 cut(s) 789, 1316, 1668, 2253, 2695, 2732, 3386, 4119
Bse1I ACTGG 2 cut(s) 1750, 2093
Bse21I CCTNAGG 1 cut(s) 1664
Bse3DI GCAATG 1 cut(s) 3506
Bse8I GATNNNNATC 2 cut(s) 843, 1811
BseBI CCWGG 7 cut(s) 784, 915, 2232, 2336, 2453, 2619, 2657
BseCI ATCGAT 3 cut(s) 2290, 4173, 4287
BseGI GGATG 8 cut(s) 1504, 2574, 3104, 3115, 3157, 3891, 3922, 4309
BseJI GATNNNNATC 2 cut(s) 843, 1811
BseLI CCNNNNNNNGG 8 cut(s) 789, 1316, 1668, 2253, 2695, 2732, 3386, 4119
BseMI GCAATG 1 cut(s) 3506
BseMII CTCAG 3 cut(s) 2442, 4128, 4182
BseNI ACTGG 2 cut(s) 1750, 2093
BseRI GAGGAG 1 cut(s) 2751
BseSI GKGCMC 1 cut(s) 3825
BseXI GCAGC 3 cut(s) 1183, 2734, 3523
BseYI CCCAGC 2 cut(s) 1999, 2610
BsgI GTGCAG 3 cut(s) 949, 1856, 3190
Bsh1236I CGCG 2 cut(s) 445, 3865
BshNI GGYRCC 3 cut(s) 2614, 2652, 3660
BshVI ATCGAT 3 cut(s) 2290, 4173, 4287
BsiHKAI GWGCWC 5 cut(s) 1405, 2168, 2239, 2321, 3128
BsiHKCI CYCGRG 2 cut(s) 852, 1762
BsiSI CCGG 2 cut(s) 1149, 2696
BslI CCNNNNNNNGG 8 cut(s) 789, 1316, 1668, 2253, 2695, 2732, 3386, 4119
BsmAI GTCTC 6 cut(s) 1918, 2124, 2782, 2788, 3810, 3874
BsmI GAATGC 2 cut(s) 32, 2938
BsoBI CYCGRG 2 cut(s) 852, 1762
Bsp119I TTCGAA 2 cut(s) 2756, 4326
Bsp1286I GDGCHC 7 cut(s) 1405, 2168, 2239, 2321, 3074, 3128, 3825
Bsp1407I TGTACA 1 cut(s) 1101
Bsp19I CCATGG 2 cut(s) 1820, 2252
BspACI CCGC 4 cut(s) 1310, 1317, 1841, 2266
BspCNI CTCAG 3 cut(s) 2441, 4129, 4183
BspDI ATCGAT 3 cut(s) 2290, 4173, 4287
BspFNI CGCG 2 cut(s) 445, 3865
BspHI TCATGA 1 cut(s) 4068
BspMI ACCTGC 2 cut(s) 1126, 3212
BspOI GCTAGC 1 cut(s) 195
BspPI GGATC 7 cut(s) 554, 567, 577, 1121, 1134, 1832, 4169
BspT104I TTCGAA 2 cut(s) 2756, 4326
BspT107I GGYRCC 3 cut(s) 2614, 2652, 3660
BsrDI GCAATG 1 cut(s) 3506
BsrGI TGTACA 1 cut(s) 1101
BsrI ACTGG 2 cut(s) 1750, 2093
BssNI GRCGYC 2 cut(s) 712, 2594
BssSI CACGAG 3 cut(s) 969, 2159, 2627
BssT1I CCWWGG 6 cut(s) 1122, 1130, 1820, 2252, 2648, 4259
Bst2BI CACGAG 3 cut(s) 969, 2159, 2627
Bst2UI CCWGG 7 cut(s) 784, 915, 2232, 2336, 2453, 2619, 2657
Bst6I CTCTTC 4 cut(s) 1949, 2079, 2188, 3858
BstACI GRCGYC 2 cut(s) 712, 2594
BstAUI TGTACA 1 cut(s) 1101
BstBAI YACGTR 3 cut(s) 1043, 2830, 3826
BstBI TTCGAA 2 cut(s) 2756, 4326
BstC8I GCNNGC 7 cut(s) 189, 193, 1994, 2264, 2928, 4101, 4143
BstDEI CTNAG 9 cut(s) 1161, 1664, 1961, 2428, 2973, 3335, 4137, 4191, 4351
BstDSI CCRYGG 4 cut(s) 468, 1820, 2252, 3192
BstF5I GGATG 8 cut(s) 1504, 2574, 3104, 3115, 3157, 3891, 3922, 4309
BstFNI CGCG 2 cut(s) 445, 3865
BstHHI GCGC 5 cut(s) 447, 795, 1992, 2005, 2932
BstMAI GTCTC 6 cut(s) 1918, 2124, 2782, 2788, 3810, 3874
BstMWI GCNNNNNNNGC 3 cut(s) 1171, 2002, 2263
BstNI CCWGG 7 cut(s) 784, 915, 2232, 2336, 2453, 2619, 2657
BstNSI RCATGY 5 cut(s) 709, 2266, 2378, 3386, 3875
BstSCI CCNGG 9 cut(s) 782, 913, 1148, 2230, 2334, 2451, 2617, 2655, 2694
BstSLI GKGCMC 1 cut(s) 3825
BstUI CGCG 2 cut(s) 445, 3865
BstV1I GCAGC 3 cut(s) 1183, 2734, 3523
BstV2I GAAGAC 1 cut(s) 3403
BstX2I RGATCY 3 cut(s) 559, 1126, 1837
BstXI CCANNNNNNTGG 4 cut(s) 19, 1094, 1619, 2668
BstYI RGATCY 3 cut(s) 559, 1126, 1837
Bsu15I ATCGAT 3 cut(s) 2290, 4173, 4287
Bsu36I CCTNAGG 1 cut(s) 1664
BsuTUI ATCGAT 3 cut(s) 2290, 4173, 4287
BtgI CCRYGG 4 cut(s) 468, 1820, 2252, 3192
BtrI CACGTC 1 cut(s) 4110
BtsCI GGATG 8 cut(s) 1504, 2574, 3104, 3115, 3157, 3891, 3922, 4309
BtsIMutI CAGTG 6 cut(s) 412, 1882, 2279, 2351, 2436, 3087
BveI ACCTGC 2 cut(s) 1126, 3212
Cac8I GCNNGC 7 cut(s) 189, 193, 1994, 2264, 2928, 4101, 4143
CciI TCATGA 1 cut(s) 4068
CfoI GCGC 5 cut(s) 447, 795, 1992, 2005, 2932
Cfr13I GGNCC 6 cut(s) 1474, 1671, 2420, 2528, 3040, 3455
ClaI ATCGAT 3 cut(s) 2290, 4173, 4287
CseI GACGC 1 cut(s) 2583
Csp6I GTAC 5 cut(s) 760, 859, 1102, 1937, 3661
CspCI CAANNNNNGTGG 2 cut(s) 1104, 1139
CviQI GTAC 5 cut(s) 760, 859, 1102, 1937, 3661
DdeI CTNAG 9 cut(s) 1161, 1664, 1961, 2428, 2973, 3335, 4137, 4191, 4351
DraI TTTAAA 2 cut(s) 691, 4392
DrdI GACNNNNNNGTC 1 cut(s) 1720
DseDI GACNNNNNNGTC 1 cut(s) 1720
EaeI YGGCCR 5 cut(s) 628, 1318, 1458, 1466, 1691
Eam1104I CTCTTC 4 cut(s) 1949, 2079, 2188, 3858
EarI CTCTTC 4 cut(s) 1949, 2079, 2188, 3858
Ecl136II GAGCTC 4 cut(s) 1403, 2166, 2237, 2319
Eco130I CCWWGG 6 cut(s) 1122, 1130, 1820, 2252, 2648, 4259
Eco24I GRGCYC 5 cut(s) 1405, 2168, 2239, 2321, 3074
Eco47I GGWCC 2 cut(s) 1474, 2420
Eco53kI GAGCTC 4 cut(s) 1403, 2166, 2237, 2319
Eco72I CACGTG 2 cut(s) 1043, 3826
Eco81I CCTNAGG 1 cut(s) 1664
Eco88I CYCGRG 2 cut(s) 852, 1762
EcoICRI GAGCTC 4 cut(s) 1403, 2166, 2237, 2319
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 7 cut(s) 782, 913, 2230, 2334, 2451, 2617, 2655
EcoT14I CCWWGG 6 cut(s) 1122, 1130, 1820, 2252, 2648, 4259
EcoT22I ATGCAT 1 cut(s) 34
EcoT38I GRGCYC 5 cut(s) 1405, 2168, 2239, 2321, 3074
ErhI CCWWGG 6 cut(s) 1122, 1130, 1820, 2252, 2648, 4259
FalI AAGNNNNNCTT 2 cut(s) 3794, 3826
FauI CCCGC 1 cut(s) 1317
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 5 cut(s) 1172, 1318, 2267, 2723, 3512
FokI GGATG 8 cut(s) 1491, 2561, 3091, 3102, 3144, 3878, 3909, 4316
FriOI GRGCYC 5 cut(s) 1405, 2168, 2239, 2321, 3074
Fsp4HI GCNGC 5 cut(s) 1172, 1318, 2267, 2723, 3512
GlaI GCGC 5 cut(s) 446, 794, 1991, 2004, 2931
GluI GCNGC 5 cut(s) 1172, 1318, 2267, 2723, 3512
GsaI CCCAGC 2 cut(s) 2003, 2614
GsuI CTGGAG 1 cut(s) 2253
HapII CCGG 2 cut(s) 1149, 2696
HgaI GACGC 1 cut(s) 2583
HhaI GCGC 5 cut(s) 447, 795, 1992, 2005, 2932
Hin1I GRCGYC 2 cut(s) 712, 2594
Hin6I GCGC 5 cut(s) 445, 793, 1990, 2003, 2930
HinP1I GCGC 5 cut(s) 445, 793, 1990, 2003, 2930
HincII GTYRAC 2 cut(s) 4011, 4217
HindII GTYRAC 2 cut(s) 4011, 4217
HindIII AAGCTT 1 cut(s) 4321
HpaI GTTAAC 1 cut(s) 4011
HpaII CCGG 2 cut(s) 1149, 2696
Hpy166II GTNNAC 9 cut(s) 160, 600, 703, 729, 1597, 3173, 3538, 4011, 4217
Hpy8I GTNNAC 9 cut(s) 160, 600, 703, 729, 1597, 3173, 3538, 4011, 4217
Hpy99I CGWCG 6 cut(s) 714, 759, 2412, 2567, 2906, 3181
HpyF10VI GCNNNNNNNGC 3 cut(s) 1171, 2002, 2263
HpyF3I CTNAG 9 cut(s) 1161, 1664, 1961, 2428, 2973, 3335, 4137, 4191, 4351
Hsp92I GRCGYC 2 cut(s) 712, 2594
HspAI GCGC 5 cut(s) 445, 793, 1990, 2003, 2930
KpnI GGTACC 1 cut(s) 3664
KspAI GTTAAC 1 cut(s) 4011
LmnI GCTCC 5 cut(s) 1400, 1679, 2234, 2572, 3450
Lsp1109I GCAGC 3 cut(s) 1183, 2734, 3523
LweI GCATC 5 cut(s) 1247, 1854, 2030, 2278, 3837
MaeIII GTNAC 8 cut(s) 1068, 1142, 1711, 1858, 1910, 2905, 3974, 4105
MboII GAAGA 8 cut(s) 659, 1621, 1847, 1966, 2066, 2175, 3403, 3845
MfeI CAATTG 4 cut(s) 78, 212, 225, 1227
MflI RGATCY 3 cut(s) 559, 1126, 1837
MhlI GDGCHC 7 cut(s) 1405, 2168, 2239, 2321, 3074, 3128, 3825
MlsI TGGCCA 2 cut(s) 1460, 1468
MluNI TGGCCA 2 cut(s) 1460, 1468
MlyI GAGTC 7 cut(s) 981, 1087, 1310, 1920, 1966, 2831, 3191
MmeI TCCRAC 5 cut(s) 955, 1061, 2408, 2431, 4137
Mox20I TGGCCA 2 cut(s) 1460, 1468
Mph1103I ATGCAT 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 2642
MscI TGGCCA 2 cut(s) 1460, 1468
MslI CAYNNNNRTG 6 cut(s) 17, 1092, 2159, 2588, 3866, 4353
Msp20I TGGCCA 2 cut(s) 1460, 1468
MspA1I CMGCKG 1 cut(s) 1843
MspI CCGG 2 cut(s) 1149, 2696
MspR9I CCNGG 9 cut(s) 784, 915, 1150, 2232, 2336, 2453, 2619, 2657, 2696
MunI CAATTG 4 cut(s) 78, 212, 225, 1227
Mva1269I GAATGC 2 cut(s) 32, 2938
MvaI CCWGG 7 cut(s) 784, 915, 2232, 2336, 2453, 2619, 2657
MvnI CGCG 2 cut(s) 445, 3865
MwoI GCNNNNNNNGC 3 cut(s) 1171, 2002, 2263
NciI CCSGG 2 cut(s) 1150, 2696
NcoI CCATGG 2 cut(s) 1820, 2252
NheI GCTAGC 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 2332
NmuCI GTSAC 6 cut(s) 1068, 1711, 1858, 1910, 3974, 4105
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 5 cut(s) 709, 2266, 2378, 3386, 3875
NspV TTCGAA 2 cut(s) 2756, 4326
OliI CACNNNNGTG 4 cut(s) 17, 1092, 2159, 3866
PaeI GCATGC 1 cut(s) 2266
PaeR7I CTCGAG 2 cut(s) 852, 1762
PagI TCATGA 1 cut(s) 4068
PaqCI CACCTGC 2 cut(s) 1126, 3212
PciI ACATGT 2 cut(s) 2374, 3382
PctI GAATGC 2 cut(s) 32, 2938
PdmI GAANNNNTTC 1 cut(s) 2642
PflFI GACNNNGTC 1 cut(s) 1916
PflMI CCANNNNNTGG 1 cut(s) 2732
PkrI GCNGC 5 cut(s) 1173, 1319, 2268, 2724, 3513
PleI GAGTC 7 cut(s) 980, 1086, 1309, 1920, 1965, 2830, 3191
PmaCI CACGTG 2 cut(s) 1043, 3826
PmlI CACGTG 2 cut(s) 1043, 3826
PpsI GAGTC 7 cut(s) 980, 1086, 1309, 1920, 1965, 2830, 3191
Ppu21I YACGTR 3 cut(s) 1043, 2830, 3826
PscI ACATGT 2 cut(s) 2374, 3382
PshBI ATTAAT 2 cut(s) 1346, 3282
PsiI TTATAA 1 cut(s) 3011
Psp124BI GAGCTC 4 cut(s) 1405, 2168, 2239, 2321
Psp6I CCWGG 7 cut(s) 782, 913, 2230, 2334, 2451, 2617, 2655
PspCI CACGTG 2 cut(s) 1043, 3826
PspFI CCCAGC 2 cut(s) 1999, 2610
PspGI CCWGG 7 cut(s) 782, 913, 2230, 2334, 2451, 2617, 2655
PspPI GGNCC 6 cut(s) 1474, 1671, 2420, 2528, 3040, 3455
PsuI RGATCY 3 cut(s) 559, 1126, 1837
PsyI GACNNNGTC 1 cut(s) 1916
RsaI GTAC 5 cut(s) 761, 860, 1103, 1938, 3662
RsaNI GTAC 5 cut(s) 760, 859, 1102, 1937, 3661
RseI CAYNNNNRTG 6 cut(s) 17, 1092, 2159, 2588, 3866, 4353
SacI GAGCTC 4 cut(s) 1405, 2168, 2239, 2321
SatI GCNGC 5 cut(s) 1172, 1318, 2267, 2723, 3512
Sau96I GGNCC 6 cut(s) 1474, 1671, 2420, 2528, 3040, 3455
SchI GAGTC 7 cut(s) 981, 1087, 1310, 1920, 1966, 2831, 3191
ScrFI CCNGG 9 cut(s) 784, 915, 1150, 2232, 2336, 2453, 2619, 2657, 2696
SduI GDGCHC 7 cut(s) 1405, 2168, 2239, 2321, 3074, 3128, 3825
SfaNI GCATC 5 cut(s) 1247, 1854, 2030, 2278, 3837
Sfr274I CTCGAG 2 cut(s) 852, 1762
SfuI TTCGAA 2 cut(s) 2756, 4326
SinI GGWCC 2 cut(s) 1474, 2420
SlaI CTCGAG 2 cut(s) 852, 1762
SmiMI CAYNNNNRTG 6 cut(s) 17, 1092, 2159, 2588, 3866, 4353
SmlI CTYRAG 7 cut(s) 852, 1026, 1762, 2016, 2238, 2314, 3272
SmoI CTYRAG 7 cut(s) 852, 1026, 1762, 2016, 2238, 2314, 3272
SphI GCATGC 1 cut(s) 2266
SsiI CCGC 4 cut(s) 1310, 1317, 1841, 2266
SstI GAGCTC 4 cut(s) 1405, 2168, 2239, 2321
StyD4I CCNGG 9 cut(s) 782, 913, 1148, 2230, 2334, 2451, 2617, 2655, 2694
StyI CCWWGG 6 cut(s) 1122, 1130, 1820, 2252, 2648, 4259
TatI WGTACW 2 cut(s) 1101, 1936
TauI GCSGC 2 cut(s) 1320, 2269
TscAI CASTG 6 cut(s) 412, 1882, 2279, 2358, 2436, 3087
TseFI GTSAC 6 cut(s) 1068, 1711, 1858, 1910, 3974, 4105
TseI GCWGC 3 cut(s) 1171, 2722, 3511
Tsp45I GTSAC 6 cut(s) 1068, 1711, 1858, 1910, 3974, 4105
TspGWI ACGGA 7 cut(s) 1771, 2412, 2506, 2890, 3158, 3209, 4167
TspRI CASTG 6 cut(s) 412, 1882, 2279, 2358, 2436, 3087
Tth111I GACNNNGTC 1 cut(s) 1916
Van91I CCANNNNNTGG 1 cut(s) 2732
VpaK11BI GGWCC 2 cut(s) 1474, 2420
VspI ATTAAT 2 cut(s) 1346, 3282
XceI RCATGY 5 cut(s) 709, 2266, 2378, 3386, 3875
XhoI CTCGAG 2 cut(s) 852, 1762
XmaJI CCTAGG 1 cut(s) 2648
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 2642
ZraI GACGTC 1 cut(s) 713
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.