Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0024333

Physical Location & Seq

Genomic Coordinates Forward (+)

14191671 .. 14192198

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1138300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATGTGCCTCTTCTCCAATTACTCAATGGAGGAGTTCTGTGCTGTGCTATTGCCACAAAGGTTGGCAAATAGTGAACACCCAATGGCAAAATCGGTGCTGGAGCATGCTAAGAGGCAGCTAAAGACATTTGGATCAACTAAGCATGTGATGGAGGCTAAGGACTTTGAGGTGCACGCAGGAGCTGGCGTTAGTGGAAGAGTTGGCGACAAAATGGTTTTGGCTGGGAACAACTGGCACATATGCGGGAAAACAATGTCCAGGTTGGTCCTGAGGTTGACAAGTATGTTTCAGAACATGAGAATCTGGCTCGAACGTGTGTGTTGGTTGCCATCGATGGAAAGATTGCTGGGTCATTTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

9.3

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024333)

Species	Orthologous Gene IDs
malus_domestica	MD03G1138300.v1.1
pyrus_communis	pycom02g15630 pycom03g13580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	121, 185
AluI	AGCT	2 cut(s)	121, 185
Alw21I	GWGCWC	1 cut(s)	177
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	1 cut(s)	142
AlwNI	CAGNNNCTG	1 cut(s)	185
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	118
AspS9I	GGNCC	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	145, 331, 340
BciT130I	CCWGG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse1I	ACTGG	1 cut(s)	239
Bse21I	CCTNAGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	130
BseYI	CCCAGC	2 cut(s)	224, 349
BshVI	ATCGAT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	264
BspDI	ATCGAT	1 cut(s)	335
BspPI	GGATC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	239
BssMI	GATC	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	262
Bst6I	CTCTTC	2 cut(s)	17, 193
BstC8I	GCNNGC	3 cut(s)	108, 177, 187
BstDEI	CTNAG	4 cut(s)	111, 141, 159, 272
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	2 cut(s)	110, 149
BstSCI	CCNGG	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	130
Bsu15I	ATCGAT	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	108, 177, 187
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	335
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	3 cut(s)	107, 146, 298
CviJI	RGCY	5 cut(s)	121, 158, 185, 224, 310
CviKI_1	RGCY	5 cut(s)	121, 158, 185, 224, 310
DdeI	CTNAG	4 cut(s)	111, 141, 159, 272
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	17, 193
EarI	CTCTTC	2 cut(s)	17, 193
Eco47I	GGWCC	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	110, 149, 301
FaiI	YATR	6 cut(s)	108, 147, 242, 244, 287, 299
FatI	CATG	3 cut(s)	106, 145, 297
FauI	CCCGC	1 cut(s)	239
FauNDI	CATATG	1 cut(s)	242
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	119
GsaI	CCCAGC	2 cut(s)	228, 353
GsuI	CTGGAG	1 cut(s)	122
Hin1II	CATG	3 cut(s)	110, 149, 301
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	1 cut(s)	303
Hpy166II	GTNNAC	3 cut(s)	77, 175, 279
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	77, 175, 279
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	4 cut(s)	111, 141, 159, 272
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	3 cut(s)	110, 149, 301
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	103, 182
Lsp1109I	GCAGC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	316
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	4, 210
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	6 cut(s)	20, 25, 108, 148, 163, 267
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	110, 149, 301
NspI	RCATGY	2 cut(s)	110, 149
PaeI	GCATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	2 cut(s)	224, 349
PspGI	CCWGG	1 cut(s)	260
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	185
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	7 cut(s)	65, 123, 174, 187, 266, 278, 319
SinI	GGWCC	1 cut(s)	268
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	260
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	312, 335
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	303
TseI	GCWGC	1 cut(s)	118
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	268
XceI	RCATGY	2 cut(s)	110, 149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.