Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0024333

Physical Location & Seq

Genomic Coordinates Forward (+)

14690379 .. 14690889

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATGTGCCTCTTCTCCAATTACTCAATAGAGGAGTTATGTGCTGTGGCGGCAAATAGTGAACACCCAATAGCAAAATCGGTGGTGGAGCATGCTAAGAGGCTGCTAAAGACGTTTGGATCAACTAAACATGTGATGGAGGCCAAGGACTTTGAGGTGCACACAGGAGCGGGCGTTAGTGGAAGAGTTGGTGACAAAATGGTTTTGGCTGGGAATAAGAGACTCATGCGGGAAAACAATGTCCTGATTGGTTCTGAGGTTGACATGTATGTTTCAAAACATGAGAATCTGGCTCGAATGTGTGTGTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

105

Amino Acids

11.48

Weight (kDa)

7.77

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024333)

Species	Orthologous Gene IDs
malus_domestica	MD03G1138300.v1.1
pyrus_communis	pycom02g15630 pycom03g13580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	170
AciI	CCGC	3 cut(s)	50, 170, 229
AclWI	GGATC	1 cut(s)	127
AflIII	ACRYGT	2 cut(s)	130, 264
AgsI	TTSAA	1 cut(s)	276
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	141
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	51, 104
BlsI	GCNGC	2 cut(s)	52, 105
BsaJI	CCNNGG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
BseDI	CCNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	119
BspACI	CCGC	3 cut(s)	50, 170, 229
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	144
Bst6I	CTCTTC	2 cut(s)	17, 178
BstC8I	GCNNGC	2 cut(s)	93, 172
BstDEI	CTNAG	2 cut(s)	96, 255
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNSI	RCATGY	3 cut(s)	95, 134, 268
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	93, 172
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	5 cut(s)	92, 131, 226, 265, 281
CviJI	RGCY	4 cut(s)	103, 143, 209, 293
CviKI_1	RGCY	4 cut(s)	103, 143, 209, 293
DdeI	CTNAG	2 cut(s)	96, 255
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	17, 178
EarI	CTCTTC	2 cut(s)	17, 178
Eco130I	CCWWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	95, 134, 229, 268, 284
FaiI	YATR	7 cut(s)	40, 93, 132, 227, 266, 270, 282
FatI	CATG	5 cut(s)	91, 130, 225, 264, 280
FauI	CCCGC	2 cut(s)	163, 222
Fnu4HI	GCNGC	2 cut(s)	51, 104
Fsp4HI	GCNGC	2 cut(s)	51, 104
GluI	GCNGC	2 cut(s)	51, 104
GsaI	CCCAGC	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	95, 134, 229, 268, 284
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	222, 286
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	62, 160, 262
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	3 cut(s)	62, 160, 262
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	2 cut(s)	96, 255
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	95, 134, 229, 268, 284
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	2 cut(s)	88, 167
LpnPI	CCDG	4 cut(s)	150, 195, 257, 275
Lsp1109I	GCAGC	1 cut(s)	90
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	121
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	1 cut(s)	119
MboII	GAAGA	2 cut(s)	4, 195
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	20, 25, 93, 133, 148, 250
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	5 cut(s)	95, 134, 229, 268, 284
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	3 cut(s)	95, 134, 268
PaeI	GCATGC	1 cut(s)	95
PciI	ACATGT	2 cut(s)	130, 264
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	52, 105
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PscI	ACATGT	2 cut(s)	130, 264
PspFI	CCCAGC	1 cut(s)	209
SatI	GCNGC	2 cut(s)	51, 104
Sau3AI	GATC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	3 cut(s)	116, 159, 261
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	3 cut(s)	50, 170, 229
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	158
XceI	RCATGY	3 cut(s)	95, 134, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.