MD03G1158900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0021887
Physical Location & Seq
Forward (+)
18873314 .. 18876316
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1158900.v1.1.491

Sequence Viewer

Length: 750 bp
ATGCAATCACCGCCGGCAACAATGGCGGCGGCGATGCTGCTGCTCCTCCTCCTGCCGATGGCGTCAACTGTGGTGAATGTGGGAGCATCTAACACAAACAGCGTGTACAACCCATGCACAGACACCAAGATTCAGAGGTCCGACGGCTTTACATTCGGGATCGCATTCTCGTCCAAGACCTCCTTCTCCCTAAACGGGAACCAGTCGCATCAGCTCTCCCCCTGCGACCGCCGCCTCTCGCTGTCCTCCTCCAACTCGCAGCTCGCGCTCTTTAGACCCAAAGTCGATGAGATCTCCCTCCTCACTATCAACACCTCTTCTTTCCAACCGGATTCATATGGTGGGTACATGGTGGCGTTTGCTGGACGAAAATATGCTGCAAGGTCTCTCCCTGCGTTTGTTGGAAACAGCACATACATAGTGACAAGTTTTACGTTGGTACTCGAGTTTCAAAAGGGTAGGCTGCAAAACTTGTATTGGAAGAGAGATGGGTGTGCTAAATGCACAGGAAACTCCAATTTTGTTTGTCTTAACAAACAAGACTGTGCCATCAAAACATCAGGCTGTAAAAACCGAGGGGGTTCTGTAGATTGCAGTCTCGGGATACAACTGGCCTTTTCTGGTACAGATAAGCATCTCTCGGTTCTCAATTCATGGTATGAGGTGGAGAACCTTCGGCAGTATTCTCTCTATGGCTTGTACTCCAATCTCAGAGATTCTCTCACCAGCCAGTATAACAACTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.33

Weight (kDa)

9.11

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021887)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44150
malus_domestica MD03G1158900.v1.1 MD11G1174300.v1.1
pyrus_communis pycom03g11060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 266
AciI CCGC 5 cut(s) 11, 26, 29, 229, 232
AclWI GGATC 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 5 cut(s) 107, 347, 441, 625, 701
AfiI CCNNNNNNNGG 2 cut(s) 58, 195
AgsI TTSAA 1 cut(s) 452
AhdI GACNNNNNGTC 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 2 cut(s) 214, 262
AluI AGCT 2 cut(s) 214, 262
Alw26I GTCTC 2 cut(s) 390, 602
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 2 cut(s) 443, 599
AoxI GGCC 1 cut(s) 612
ApeKI GCWGC 5 cut(s) 37, 40, 259, 377, 463
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 85, 715
AvaI CYCGRG 2 cut(s) 443, 599
AvaII GGWCC 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BarI GAAGNNNNNNTAC 1 cut(s) 725
BbvI GCAGC 5 cut(s) 24, 27, 271, 364, 450
BccI CCATC 3 cut(s) 52, 482, 557
BceAI ACGGC 1 cut(s) 160
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciVI GTATCC 1 cut(s) 597
BcoDI GTCTC 2 cut(s) 390, 602
BfmI CTRYAG 1 cut(s) 585
BfuI GTATCC 1 cut(s) 597
BglII AGATCT 1 cut(s) 291
BisI GCNGC 8 cut(s) 27, 30, 38, 41, 232, 260, 378, 464
BlsI GCNGC 8 cut(s) 28, 31, 39, 42, 233, 261, 379, 465
Bme18I GGWCC 1 cut(s) 138
BmeRI GACNNNNNGTC 1 cut(s) 281
BmeT110I CYCGRG 2 cut(s) 443, 599
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 200
BmsI GCATC 4 cut(s) 24, 95, 217, 643
BplI GAGNNNNNCTC 2 cut(s) 705, 737
BsaBI GATNNNNATC 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 574
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 195
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 3 cut(s) 202, 615, 730
Bse8I GATNNNNATC 1 cut(s) 633
BseDI CCNNGG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 2 cut(s) 58, 195
BseMII CTCAG 1 cut(s) 724
BseNI ACTGG 3 cut(s) 202, 615, 730
BseRI GAGGAG 4 cut(s) 35, 38, 238, 290
BseXI GCAGC 5 cut(s) 24, 27, 271, 364, 450
Bsh1236I CGCG 1 cut(s) 266
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 229
BsiHKCI CYCGRG 2 cut(s) 443, 599
BsiSI CCGG 2 cut(s) 14, 329
BslI CCNNNNNNNGG 2 cut(s) 58, 195
BsmAI GTCTC 2 cut(s) 390, 602
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 614
Bso31I GGTCTC 1 cut(s) 390
BsoBI CYCGRG 2 cut(s) 443, 599
Bsp1407I TGTACA 1 cut(s) 105
Bsp143I GATC 2 cut(s) 159, 291
BspACI CCGC 5 cut(s) 11, 26, 29, 229, 232
BspANI GGCC 1 cut(s) 614
BspCNI CTCAG 1 cut(s) 723
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 105
BsrI ACTGG 3 cut(s) 202, 615, 730
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 2 cut(s) 159, 291
BssNI GRCGYC 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 70, 545
Bst6I CTCTTC 2 cut(s) 322, 476
BstACI GRCGYC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 15, 264
BstDEI CTNAG 1 cut(s) 710
BstFNI CGCG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 2 cut(s) 162, 294
BstMAI GTCTC 2 cut(s) 390, 602
BstMBI GATC 2 cut(s) 159, 291
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 4 cut(s) 10, 23, 231, 265
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 5 cut(s) 24, 27, 271, 364, 450
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BsuI GTATCC 1 cut(s) 597
BsuRI GGCC 1 cut(s) 614
BtgZI GCGATG 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 15, 264
CfoI GCGC 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 51
Csp6I GTAC 5 cut(s) 106, 346, 440, 624, 700
CviAII CATG 3 cut(s) 114, 349, 654
CviJI RGCY 8 cut(s) 147, 214, 262, 463, 564, 614, 696, 729
CviKI_1 RGCY 8 cut(s) 147, 214, 262, 463, 564, 614, 696, 729
CviQI GTAC 5 cut(s) 106, 346, 440, 624, 700
DdeI CTNAG 1 cut(s) 710
DpnI GATC 2 cut(s) 161, 293
DpnII GATC 2 cut(s) 159, 291
DriI GACNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 2 cut(s) 322, 476
Eam1105I GACNNNNNGTC 1 cut(s) 281
EarI CTCTTC 2 cut(s) 322, 476
Eco31I GGTCTC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 138
Eco88I CYCGRG 2 cut(s) 443, 599
FaeI CATG 3 cut(s) 117, 352, 657
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 3 cut(s) 113, 348, 653
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 8 cut(s) 27, 30, 38, 41, 232, 260, 378, 464
Fsp4HI GCNGC 8 cut(s) 27, 30, 38, 41, 232, 260, 378, 464
GlaI GCGC 1 cut(s) 267
GluI GCNGC 8 cut(s) 27, 30, 38, 41, 232, 260, 378, 464
HaeIII GGCC 1 cut(s) 614
HapII CCGG 2 cut(s) 14, 329
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 268
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 117, 352, 657
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 3 cut(s) 130, 332, 716
HpaII CCGG 2 cut(s) 14, 329
HphI GGTGA 2 cut(s) 85, 715
Hpy166II GTNNAC 2 cut(s) 66, 106
Hpy188I TCNGA 3 cut(s) 135, 142, 713
Hpy188III TCNNGA 2 cut(s) 157, 601
Hpy8I GTNNAC 2 cut(s) 66, 106
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 2 cut(s) 193, 683
HpyCH4III ACNGT 2 cut(s) 70, 545
HpyCH4IV ACGT 1 cut(s) 434
HpyCH4V TGCA 6 cut(s) 4, 117, 380, 466, 504, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 23, 231, 265
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 1 cut(s) 434
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 117, 352, 657
HspAI GCGC 1 cut(s) 266
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 159, 291
LmnI GCTCC 2 cut(s) 48, 83
Lsp1109I GCAGC 5 cut(s) 24, 27, 271, 364, 450
LweI GCATC 4 cut(s) 24, 95, 217, 643
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 1 cut(s) 421
MalI GATC 2 cut(s) 161, 293
MboI GATC 2 cut(s) 159, 291
MboII GAAGA 2 cut(s) 309, 493
MflI RGATCY 1 cut(s) 291
MluCI AATT 2 cut(s) 517, 649
MmeI TCCRAC 4 cut(s) 165, 276, 349, 382
MroNI GCCGGC 1 cut(s) 13
MseI TTAA 2 cut(s) 531, 748
MspI CCGG 2 cut(s) 14, 329
Mva1269I GAATGC 1 cut(s) 164
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 10, 23, 231, 265
NaeI GCCGGC 1 cut(s) 15
NdeI CATATG 1 cut(s) 337
NdeII GATC 2 cut(s) 159, 291
NgoMIV GCCGGC 1 cut(s) 13
NlaIII CATG 3 cut(s) 117, 352, 657
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 443
PctI GAATGC 1 cut(s) 164
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 3 cut(s) 130, 332, 716
PkrI GCNGC 8 cut(s) 28, 31, 39, 42, 233, 261, 379, 465
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 138
PspXI VCTCGAGB 1 cut(s) 443
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 5 cut(s) 107, 347, 441, 625, 701
RsaNI GTAC 5 cut(s) 106, 346, 440, 624, 700
SaqAI TTAA 2 cut(s) 531, 748
SatI GCNGC 8 cut(s) 27, 30, 38, 41, 232, 260, 378, 464
Sau3AI GATC 2 cut(s) 159, 291
Sau96I GGNCC 1 cut(s) 138
SetI ASST 9 cut(s) 140, 182, 216, 264, 317, 386, 437, 666, 675
SfaNI GCATC 4 cut(s) 24, 95, 217, 643
SfcI CTRYAG 1 cut(s) 585
Sfr274I CTCGAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 2 cut(s) 517, 649
SsiI CCGC 5 cut(s) 11, 26, 29, 229, 232
TaaI ACNGT 2 cut(s) 70, 545
TaiI ACGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 285, 444
TasI AATT 2 cut(s) 517, 649
TatI WGTACW 2 cut(s) 105, 699
TauI GCSGC 3 cut(s) 29, 32, 234
TfiI GAWTC 3 cut(s) 130, 332, 716
Tru1I TTAA 2 cut(s) 531, 748
Tru9I TTAA 2 cut(s) 531, 748
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 5 cut(s) 37, 40, 259, 377, 463
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 324, 642
VpaK11BI GGWCC 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.