Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0020990

Physical Location & Seq

Genomic Coordinates Forward (+)

31727995 .. 31729096

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1231900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCGGGCTTTCAATGGAGTCTACCAAGTGCTCGAGGAAATGCACAAGAGAGAGGGACTTATCGGTGAAGGAACATATGAGATTTTGCTCAATGGGTATGCGGCTGCGCATAAGGTGGAGGAAGCAATTGATGTGTTTTACAAGAGAAAAGAGTTTGGTCTCGAGCTTGGTTTGGTTGCGTTTCAGAAGCTTATGCTGTGGGGAAAGAGTTCGGGCAAGATATACAGACGTAGAATATTGGATGGTGTGTGCGAGCGATGTGAGGCGAAAAGGTTTTGGAAAGATATAATCGCGTCTGAATGCAAGCCAGATCAGTTTGCGTCTGGAACTTTTATAAATGCACTGACCAAGAAAGGAAAGTTGGGTACGGCACTCAAGTTTTTTCGAGCAATGTGGGATCAGGGTTGCAACCCAGACGTGGTGACGTGCAATTGCATAATCGATGCTCTTTGTTTCAAGAAGAGGATTCCTTGTGCATTGGAAGTATATGCCCGACGATGTTGCCCAAATGCAGCAACATACAACTCACTAATTAAACACCTATGCAAAGTACGGTGTATGGAGATGGTTTACGAGCTTTTGGAAGAAATGGAACAGAGGAAGGGTAGTTGTCTGCCCAATGAAGTAACTTCCAATTACTTCCTCAAGTCGTCGAAGAAACCAGAGGAAGTTCCTGGCCTGTTGGAGAGAATGCAGAAAAATGGATGCAACCTGACTGGTGACACATACAACTTGCTGTTGAAGTTGTATATGGAATGGGATTGTCAGGAAAGAGTGCGATATAAGTGGGACGAGATGGAGAAAAAGGGGTTGGGACCTGACCGGCGATCTTATACCATTATGATTCACGGGTTCCATGATAAGAGAAGGGTCAAGGAAACTTTGCGCTATTTCCGTGAGATGACATCAAAGGGGATGATACCAGAGCCAAGGACCGAACTATTGATGGATTCTATGAATCTCCAGTCGAAAAAGGAAGGTGGACAAGCAGTAAAGCAAGCAGAGGAAAATGACAGCTTGACATTAGGGCCTTTGTGGAACAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

350

Amino Acids

40.41

Weight (kDa)

8.83

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	103 - 151	3.3e-10	PPR repeat family
PPR_2	PF13041	169 - 216	1.6e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15200
malus_domestica	MD03G1231900.v1.1 MD11G1253000.v1.1
prunus_persica	Prupe.4G176100_v2.0.a1
pyrus_communis	pycom03g17930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
Acc16I	TGCGCA	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	21
AccII	CGCG	1 cut(s)	293
AciI	CCGC	2 cut(s)	4, 101
AclWI	GGATC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	367, 552
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	13, 457, 742
AjiI	CACGTC	2 cut(s)	418, 426
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	4 cut(s)	344, 376, 794, 826
AluBI	AGCT	4 cut(s)	166, 190, 577, 1017
AluI	AGCT	4 cut(s)	166, 190, 577, 1017
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	2 cut(s)	32, 161
AoxI	GGCC	2 cut(s)	676, 1028
ApeKI	GCWGC	2 cut(s)	104, 512
Asp700I	GAANNNNTTC	1 cut(s)	208
AspLEI	GCGC	2 cut(s)	109, 888
AspS9I	GGNCC	3 cut(s)	815, 933, 1028
AsuHPI	GGTGA	3 cut(s)	77, 433, 731
AvaI	CYCGRG	2 cut(s)	32, 161
AvaII	GGWCC	2 cut(s)	815, 933
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	91, 524
BccI	CCATC	4 cut(s)	236, 559, 790, 940
BceAI	ACGGC	1 cut(s)	384
BcgI	CGANNNNNNTGC	2 cut(s)	483, 517
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	102, 105, 513
BlsI	GCNGC	3 cut(s)	103, 106, 514
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	2 cut(s)	815, 933
BmeT110I	CYCGRG	2 cut(s)	32, 161
BmgBI	CACGTC	2 cut(s)	418, 426
BmgT120I	GGNCC	3 cut(s)	815, 933, 1028
BmiI	GGNNCC	2 cut(s)	816, 854
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	2 cut(s)	433, 695
BpmI	CTGGAG	1 cut(s)	947
BpuEI	CTTGAG	2 cut(s)	359, 629
Bsa29I	ATCGAT	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	929
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	822
Bse1I	ACTGG	2 cut(s)	721, 964
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	675
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	929
BseGI	GGATG	3 cut(s)	247, 710, 921
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	721, 964
BseXI	GCAGC	2 cut(s)	91, 524
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	678, 1030
BshVI	ATCGAT	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	2 cut(s)	32, 161
BsiSI	CCGG	1 cut(s)	823
BslFI	GGGAC	3 cut(s)	69, 803, 828
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	3 cut(s)	69, 803, 828
BsmI	GAATGC	2 cut(s)	305, 696
BsnI	GGCC	2 cut(s)	678, 1030
Bso31I	GGTCTC	1 cut(s)	164
BsoBI	CYCGRG	2 cut(s)	32, 161
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	310, 397, 827
BspACI	CCGC	2 cut(s)	4, 101
BspANI	GGCC	2 cut(s)	678, 1030
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	816, 854
BspPI	GGATC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	822
BsrI	ACTGG	2 cut(s)	721, 964
BssAI	RCCGGY	1 cut(s)	822
BssECI	CCNNGG	1 cut(s)	929
BssMI	GATC	3 cut(s)	310, 397, 827
BssT1I	CCWWGG	1 cut(s)	929
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	1 cut(s)	555
Bst6I	CTCTTC	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	6, 254, 305, 999
BstF5I	GGATG	3 cut(s)	247, 710, 921
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	109, 888
BstKTI	GATC	3 cut(s)	313, 400, 830
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	310, 397, 827
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	91, 524
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	678, 1030
BsuTUI	ATCGAT	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	271
BtrI	CACGTC	2 cut(s)	418, 426
BtsCI	GGATG	3 cut(s)	247, 710, 921
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	4 cut(s)	6, 254, 305, 999
CfoI	GCGC	2 cut(s)	109, 888
Cfr10I	RCCGGY	1 cut(s)	822
Cfr13I	GGNCC	3 cut(s)	815, 933, 1028
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	2 cut(s)	282, 309
Csp6I	GTAC	2 cut(s)	366, 551
CviAII	CATG	1 cut(s)	857
CviQI	GTAC	2 cut(s)	366, 551
DpnI	GATC	3 cut(s)	312, 399, 829
DpnII	GATC	3 cut(s)	310, 397, 827
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	929
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	815, 933
Eco88I	CYCGRG	2 cut(s)	32, 161
EcoO109I	RGGNCCY	2 cut(s)	815, 1028
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	929
ErhI	CCWWGG	1 cut(s)	929
FaeI	CATG	1 cut(s)	860
FaqI	GGGAC	3 cut(s)	69, 803, 828
FatI	CATG	1 cut(s)	856
FauNDI	CATATG	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	102, 105, 513
FokI	GGATG	3 cut(s)	254, 717, 928
Fsp4HI	GCNGC	3 cut(s)	102, 105, 513
FspI	TGCGCA	1 cut(s)	108
GlaI	GCGC	2 cut(s)	108, 887
GluI	GCNGC	3 cut(s)	102, 105, 513
GsuI	CTGGAG	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	678, 1030
HapII	CCGG	1 cut(s)	823
HgaI	GACGC	2 cut(s)	282, 309
HhaI	GCGC	2 cut(s)	109, 888
Hin1II	CATG	1 cut(s)	860
Hin6I	GCGC	2 cut(s)	107, 886
HinP1I	GCGC	2 cut(s)	107, 886
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	5 cut(s)	18, 466, 844, 950, 958
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	3 cut(s)	77, 433, 731
Hpy166II	GTNNAC	3 cut(s)	22, 571, 983
Hpy188I	TCNGA	2 cut(s)	186, 298
Hpy188III	TCNNGA	4 cut(s)	161, 324, 457, 767
Hpy8I	GTNNAC	3 cut(s)	22, 571, 983
Hpy99I	CGWCG	2 cut(s)	498, 655
HpyAV	CCTTC	4 cut(s)	62, 595, 861, 971
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	3 cut(s)	229, 417, 425
HpySE526I	ACGT	3 cut(s)	229, 417, 425
Hsp92II	CATG	1 cut(s)	860
HspAI	GCGC	2 cut(s)	107, 886
Kzo9I	GATC	3 cut(s)	310, 397, 827
Lsp1109I	GCAGC	2 cut(s)	91, 524
LweI	GCATC	2 cut(s)	433, 695
MaeII	ACGT	3 cut(s)	229, 417, 425
MaeIII	GTNAC	3 cut(s)	421, 625, 719
MalI	GATC	3 cut(s)	312, 399, 829
MboI	GATC	3 cut(s)	310, 397, 827
MboII	GAAGA	3 cut(s)	472, 596, 667
MfeI	CAATTG	2 cut(s)	126, 430
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	5 cut(s)	126, 430, 531, 634, 1042
MlyI	GAGTC	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	9 cut(s)	28, 46, 112, 256, 456, 591, 653, 658, 997
MroXI	GAANNNNTTC	1 cut(s)	208
MseI	TTAA	1 cut(s)	534
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	1 cut(s)	675
MunI	CAATTG	2 cut(s)	126, 430
Mva1269I	GAATGC	2 cut(s)	305, 696
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	3 cut(s)	310, 397, 827
NlaIII	CATG	1 cut(s)	860
NlaIV	GGNNCC	2 cut(s)	816, 854
NmuCI	GTSAC	2 cut(s)	421, 719
NsbI	TGCGCA	1 cut(s)	108
PaeR7I	CTCGAG	2 cut(s)	32, 161
PctI	GAATGC	2 cut(s)	305, 696
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	4 cut(s)	466, 844, 950, 958
PkrI	GCNGC	3 cut(s)	103, 106, 514
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PpuMI	RGGWCCY	1 cut(s)	815
PsiI	TTATAA	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	815
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	816, 854
PspPI	GGNCC	3 cut(s)	815, 933, 1028
PspPPI	RGGWCCY	1 cut(s)	815
PspXI	VCTCGAGB	1 cut(s)	32
RsaI	GTAC	2 cut(s)	367, 552
RsaNI	GTAC	2 cut(s)	366, 551
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	3 cut(s)	102, 105, 513
Sau3AI	GATC	3 cut(s)	310, 397, 827
Sau96I	GGNCC	3 cut(s)	815, 933, 1028
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	433, 695
Sfr274I	CTCGAG	2 cut(s)	32, 161
SinI	GGWCC	2 cut(s)	815, 933
SlaI	CTCGAG	2 cut(s)	32, 161
SmlI	CTYRAG	4 cut(s)	32, 161, 374, 644
SmoI	CTYRAG	4 cut(s)	32, 161, 374, 644
Sse9I	AATT	5 cut(s)	126, 430, 531, 634, 1042
SsiI	CCGC	2 cut(s)	4, 101
SspI	AATATT	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	929
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	3 cut(s)	232, 420, 428
TaqI	TCGA	6 cut(s)	33, 162, 385, 441, 653, 968
TaqII	GACCGA	1 cut(s)	950
TasI	AATT	5 cut(s)	126, 430, 531, 634, 1042
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	4 cut(s)	466, 844, 950, 958
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	421, 719
TseI	GCWGC	2 cut(s)	104, 512
Tsp45I	GTSAC	2 cut(s)	421, 719
TspDTI	ATGAA	3 cut(s)	636, 971, 1035
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	2 cut(s)	815, 933
XhoI	CTCGAG	2 cut(s)	32, 161
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.