Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0020990

Physical Location & Seq

Genomic Coordinates Forward (+)

36536725 .. 36538945

Gene Structure 2221 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1253000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGCCTTTCAAATTCCGACCGTTGAGAACCTTTTCCCGGGAAAACAACATCCAACGGAATTTCAATTTAAAATTCCAAACCCAACCCAGAAACCATCACTGCCACTATCCGATTTCACACAAAGCCCTCTCTTACCTTTCCAAATTTCACAAGTGCCGGAGCCCAACGAACGCAAAGCCAGAAATTTTCACCAAGAATTCCCAATTTTACTTTCTGGGTAGGAGTAGGACTTTCGTCCACTATGTTGCAGATGCTGAAGAAAATGCGCGGTTTGGGGAAGACCCGGATGATCAAACGGCTGTATTAATTCAAAACATCCTCAAGTTTCGAAGGGACAAGCCGGCCGAGGAGATTGAGTGGGCGCTCGACCGATGTGGGTTTGTGCTGACAGATTGTTTGGTTTTGGATGTGCTGCGGAGGCATCGGTCTGATTGGAAACCGGCGTATGCGTTCTTCAATTGGGTATGTAAAGGTGGAGGAGGAAGTGGGTATATGTCCGGGTCGGATTGTTACAATGAGATTCTTGACATTCTTGGCAAAATGCGGGCTTTTGATGAAGTCTACCAAATGCTCGACGAAATGCGCATGAGAGAGGGACTTATCAATGAAGGAACGTATGAGATTTTGCTCAATAGGTATGCGGCTGCACATAGGGTGGAGGAAGCAATTGATGTGTTTTATAAGAGAAAAGAGTTCGGTCTCGAGCTTGATTTGGTTGCTTTTCAGAAGCTTATGATGTGGTTATGCCGGTATAAGCATGTAGAAGCTGCAGAAACTTTGTTTAACGTGAAGGGGAAAGAGTTTGGGAAGTATATAAAGACGTGGAATATCATTCTTAATGGATGGTGTGTACGAGCAAATGTATGCGAGGCAAAAAGGTTTTGGAAAGATATAATCGCGTCTAATTGCAAGCCTGATCAGTTTACGTATGGGACTTTTATAAATGCACTGACCAAGAAGGGAAAGTTGGGTACGGCACTCAAGTTATTTCAAGCAATGTGGGATCAGGGTTGCAACCCAGACGTGGTGACATGCAATTGCATAATCGATGCCCTTTGTTTCAAGAAGAGGATTCCTCATGCTTTGGAAGTATTTAAGGAAATGAATGTCCGAGGATGTTGCCCAAATGCAGCAACATACAACTCACTTATTAAGCACCTATGCAAAATACGGCGTATGGAGAAGGTTTGTGAGCTTTTGGAAGAAATGGAACAGAGGAAGGGTAGTTGTCTGCCCAACGAAGTAACTTTCAATTACTTGCTTAAGTCGTCGAAGAAACCAGAGGAAATTCCTGGCCTGCTGGAGAGGATGCAGAGAAATCAGTGCAAGATGACTGGTGACACATACAATTTGCTGTTGAAGTTGTATATGGAGTGGGATTGTCAGGAAAGAGTGAGATATACATGGGATGAGATGGAGAAAAATGGGTTGGGACCTGACCGACGATCTTATACCATTATCATTCATGGGTTCCATGATAAGAGAAGGATCAAGGAAACTTTGCGCTATTTCCGTGAGATGACTTCAAAGGGGATGATACCAGAGCCAAGGACCGAAATATTGATGGATTCTATGAATGTCCAGTCAAAAAAGGAGGGTGGACAAGTGGAAAAGCAAGCGGAGGAAAATGACAGTTTGACATGGCCTTTGAGTACAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0022626 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

555

Amino Acids

65.09

Weight (kDa)

8.8

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	273 - 319	4e-09	PPR repeat family
PPR_3	PF13812	297 - 351	6.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	302 - 333	1.2e-07	PPR repeat
PPR_2	PF13041	309 - 344	8.9e-07	PPR repeat family
PPR_long	PF17177	313 - 458	1.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	328 - 386	1.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	337 - 368	1.5e-07	PPR repeat
PPR_2	PF13041	340 - 389	4.4e-18	PPR repeat family
PPR_3	PF13812	364 - 422	3.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	371 - 404	7.7e-09	PPR repeat
PPR_2	PF13041	375 - 422	3.8e-12	PPR repeat family
PPR	PF01535	379 - 406	8.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15200
malus_domestica	MD03G1231900.v1.1 MD11G1253000.v1.1
prunus_persica	Prupe.4G176100_v2.0.a1
pyrus_communis	pycom03g17930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	681, 941
Acc16I	TGCGCA	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	2 cut(s)	268, 899
AciI	CCGC	5 cut(s)	268, 415, 544, 641, 1619
AclWI	GGATC	2 cut(s)	1011, 1496
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	8 cut(s)	11, 58, 71, 143, 183, 196, 1287, 1659
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	3 cut(s)	852, 973, 1654
AfiI	CCNNNNNNNGG	2 cut(s)	36, 1024
AflII	CTTAAG	1 cut(s)	1262
AgsI	TTSAA	9 cut(s)	10, 64, 311, 457, 992, 1063, 1252, 1360, 1527
AjiI	CACGTC	2 cut(s)	822, 1024
AjnI	CCWGG	1 cut(s)	1291
AjuI	GAANNNNNNNTTGG	6 cut(s)	195, 227, 950, 982, 1412, 1444
AluBI	AGCT	4 cut(s)	706, 730, 767, 1195
AluI	AGCT	4 cut(s)	706, 730, 767, 1195
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	2 cut(s)	1011, 1496
AlwNI	CAGNNNCTG	1 cut(s)	254
Ama87I	CYCGRG	2 cut(s)	36, 701
AoxI	GGCC	3 cut(s)	342, 1294, 1643
ApeKI	GCWGC	4 cut(s)	412, 644, 767, 1130
ApoI	RAATTY	8 cut(s)	11, 58, 71, 143, 183, 196, 1287, 1659
ArsI	GACNNNNNNTTYG	4 cut(s)	379, 411, 1630, 1662
AseI	ATTAAT	1 cut(s)	305
Asp700I	GAANNNNTTC	1 cut(s)	31
AspLEI	GCGC	4 cut(s)	268, 364, 585, 1506
AspS9I	GGNCC	2 cut(s)	1433, 1551
AsuC2I	CCSGG	4 cut(s)	37, 38, 284, 499
AsuHPI	GGTGA	3 cut(s)	181, 1039, 1349
AsuII	TTCGAA	1 cut(s)	328
AvaI	CYCGRG	2 cut(s)	36, 701
AvaII	GGWCC	2 cut(s)	1433, 1551
BanII	GRGCYC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	437, 469
BbsI	GAAGAC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	399, 631, 754, 1142
BccI	CCATC	4 cut(s)	102, 837, 1408, 1558
BceAI	ACGGC	3 cut(s)	312, 990, 1187
BcgI	CGANNNNNNTGC	2 cut(s)	1101, 1135
BciT130I	CCWGG	1 cut(s)	1293
BclI	TGATCA	2 cut(s)	289, 916
BcnI	CCSGG	4 cut(s)	37, 38, 284, 499
BcoDI	GTCTC	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	1 cut(s)	365
BfrI	CTTAAG	1 cut(s)	1262
BisI	GCNGC	5 cut(s)	413, 642, 645, 768, 1131
BlsI	GCNGC	5 cut(s)	414, 643, 646, 769, 1132
Bme1390I	CCNGG	5 cut(s)	37, 38, 284, 499, 1293
Bme18I	GGWCC	2 cut(s)	1433, 1551
BmeT110I	CYCGRG	2 cut(s)	36, 701
BmgBI	CACGTC	2 cut(s)	822, 1024
BmgT120I	GGNCC	2 cut(s)	1433, 1551
BmiI	GGNNCC	3 cut(s)	161, 1434, 1472
BmrFI	CCNGG	5 cut(s)	37, 38, 284, 499, 1293
BmsI	GCATC	4 cut(s)	241, 430, 1039, 1299
BoxI	GACNNNNGTC	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	1060, 1092
BpmI	CTGGAG	1 cut(s)	1322
Bpu14I	TTCGAA	1 cut(s)	328
BpuEI	CTTGAG	2 cut(s)	305, 965
BpuMI	CCSGG	4 cut(s)	37, 38, 284, 499
Bsa29I	ATCGAT	1 cut(s)	1047
BsaAI	YACGTR	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	4 cut(s)	36, 345, 1111, 1547
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 1024
Bse118I	RCCGGY	3 cut(s)	340, 439, 747
Bse1I	ACTGG	2 cut(s)	1339, 1582
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	1293
BseCI	ATCGAT	1 cut(s)	1047
BseDI	CCNNGG	4 cut(s)	36, 345, 1111, 1547
BseGI	GGATG	9 cut(s)	48, 292, 315, 412, 848, 1121, 1314, 1414, 1539
BseLI	CCNNNNNNNGG	2 cut(s)	36, 1024
BseMI	GCAATG	1 cut(s)	1002
BseNI	ACTGG	2 cut(s)	1339, 1582
BseRI	GAGGAG	2 cut(s)	362, 492
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	4 cut(s)	399, 631, 754, 1142
BsgI	GTGCAG	1 cut(s)	630
Bsh1236I	CGCG	2 cut(s)	268, 899
Bsh1285I	CGRYCG	3 cut(s)	20, 345, 370
BshFI	GGCC	3 cut(s)	344, 1296, 1645
BshVI	ATCGAT	1 cut(s)	1047
BsiEI	CGRYCG	3 cut(s)	20, 345, 370
BsiHKCI	CYCGRG	2 cut(s)	36, 701
BsiSI	CCGG	7 cut(s)	37, 157, 284, 341, 440, 498, 748
BslFI	GGGAC	4 cut(s)	347, 609, 946, 1446
BslI	CCNNNNNNNGG	2 cut(s)	36, 1024
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	4 cut(s)	347, 609, 946, 1446
BsnI	GGCC	3 cut(s)	344, 1296, 1645
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	2 cut(s)	36, 701
Bsp119I	TTCGAA	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
BspACI	CCGC	5 cut(s)	268, 415, 544, 641, 1619
BspANI	GGCC	3 cut(s)	344, 1296, 1645
BspDI	ATCGAT	1 cut(s)	1047
BspFNI	CGCG	2 cut(s)	268, 899
BspLI	GGNNCC	3 cut(s)	161, 1434, 1472
BspMAI	CTGCAG	1 cut(s)	772
BspPI	GGATC	2 cut(s)	1011, 1496
BspT104I	TTCGAA	1 cut(s)	328
BspTI	CTTAAG	1 cut(s)	1262
BspTNI	GGTCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	1002
BsrFI	RCCGGY	3 cut(s)	340, 439, 747
BsrI	ACTGG	2 cut(s)	1339, 1582
BssAI	RCCGGY	3 cut(s)	340, 439, 747
BssECI	CCNNGG	4 cut(s)	36, 345, 1111, 1547
BssMI	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
BssT1I	CCWWGG	1 cut(s)	1547
Bst2UI	CCWGG	1 cut(s)	1293
Bst4CI	ACNGT	2 cut(s)	21, 1634
Bst6I	CTCTTC	1 cut(s)	1061
BstAFI	CTTAAG	1 cut(s)	1262
BstBAI	YACGTR	1 cut(s)	927
BstBI	TTCGAA	1 cut(s)	328
BstC8I	GCNNGC	5 cut(s)	342, 546, 911, 1298, 1617
BstF5I	GGATG	9 cut(s)	48, 292, 315, 412, 848, 1121, 1314, 1414, 1539
BstFNI	CGCG	2 cut(s)	268, 899
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	4 cut(s)	268, 364, 585, 1506
BstKTI	GATC	5 cut(s)	292, 919, 1006, 1448, 1491
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
BstMCI	CGRYCG	3 cut(s)	20, 345, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	418
BstNI	CCWGG	1 cut(s)	1293
BstNSI	RCATGY	2 cut(s)	761, 1035
BstPAI	GACNNNNGTC	1 cut(s)	233
BstSCI	CCNGG	5 cut(s)	35, 36, 282, 497, 1291
BstSFI	CTRYAG	1 cut(s)	768
BstSNI	TACGTA	1 cut(s)	927
BstUI	CGCG	2 cut(s)	268, 899
BstV1I	GCAGC	4 cut(s)	399, 631, 754, 1142
BstV2I	GAAGAC	1 cut(s)	285
BstZI	CGGCCG	1 cut(s)	342
Bsu15I	ATCGAT	1 cut(s)	1047
BsuRI	GGCC	3 cut(s)	344, 1296, 1645
BsuTUI	ATCGAT	1 cut(s)	1047
BtrI	CACGTC	2 cut(s)	822, 1024
BtsCI	GGATG	9 cut(s)	48, 292, 315, 412, 848, 1121, 1314, 1414, 1539
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	3 cut(s)	97, 947, 1328
Cac8I	GCNNGC	5 cut(s)	342, 546, 911, 1298, 1617
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	4 cut(s)	268, 364, 585, 1506
Cfr10I	RCCGGY	3 cut(s)	340, 439, 747
Cfr13I	GGNCC	2 cut(s)	1433, 1551
Cfr9I	CCCGGG	1 cut(s)	36
ClaI	ATCGAT	1 cut(s)	1047
CseI	GACGC	1 cut(s)	888
Csp6I	GTAC	3 cut(s)	851, 972, 1653
CspCI	CAANNNNNGTGG	2 cut(s)	980, 1015
CviAII	CATG	8 cut(s)	586, 758, 1032, 1079, 1404, 1466, 1475, 1641
CviQI	GTAC	3 cut(s)	851, 972, 1653
DpnI	GATC	5 cut(s)	291, 918, 1005, 1447, 1490
DpnII	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
DraI	TTTAAA	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	342
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	1061
EarI	CTCTTC	1 cut(s)	1061
EclXI	CGGCCG	1 cut(s)	342
Eco105I	TACGTA	1 cut(s)	927
Eco130I	CCWWGG	1 cut(s)	1547
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	2 cut(s)	1433, 1551
Eco52I	CGGCCG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	2 cut(s)	36, 701
EcoO109I	RGGNCCY	1 cut(s)	1433
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	1291
EcoT14I	CCWWGG	1 cut(s)	1547
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	1547
FaeI	CATG	8 cut(s)	589, 761, 1035, 1082, 1407, 1469, 1478, 1644
FaqI	GGGAC	4 cut(s)	347, 609, 946, 1446
FatI	CATG	8 cut(s)	585, 757, 1031, 1078, 1403, 1465, 1474, 1640
FauI	CCCGC	1 cut(s)	537
FbaI	TGATCA	2 cut(s)	289, 916
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	413, 642, 645, 768, 1131
FokI	GGATG	9 cut(s)	35, 299, 302, 419, 855, 1128, 1321, 1421, 1546
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	5 cut(s)	413, 642, 645, 768, 1131
FspAI	RTGCGCAY	1 cut(s)	584
FspI	TGCGCA	1 cut(s)	584
GlaI	GCGC	4 cut(s)	267, 363, 584, 1505
GluI	GCNGC	5 cut(s)	413, 642, 645, 768, 1131
GsuI	CTGGAG	1 cut(s)	1322
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	3 cut(s)	344, 1296, 1645
HapII	CCGG	7 cut(s)	37, 157, 284, 341, 440, 498, 748
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	4 cut(s)	268, 364, 585, 1506
Hin1II	CATG	8 cut(s)	589, 761, 1035, 1082, 1407, 1469, 1478, 1644
Hin6I	GCGC	4 cut(s)	266, 362, 583, 1504
HinP1I	GCGC	4 cut(s)	266, 362, 583, 1504
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	3 cut(s)	520, 1072, 1568
HpaII	CCGG	7 cut(s)	37, 157, 284, 341, 440, 498, 748
HphI	GGTGA	3 cut(s)	181, 1039, 1349
Hpy166II	GTNNAC	5 cut(s)	238, 562, 851, 924, 1601
Hpy188I	TCNGA	6 cut(s)	17, 111, 430, 505, 726, 1112
Hpy188III	TCNNGA	4 cut(s)	524, 701, 1063, 1385
Hpy8I	GTNNAC	5 cut(s)	238, 562, 851, 924, 1601
Hpy99I	CGWCG	3 cut(s)	578, 1273, 1446
HpyAV	CCTTC	7 cut(s)	324, 602, 784, 952, 1177, 1213, 1479
HpyCH4III	ACNGT	2 cut(s)	21, 1634
HpyCH4IV	ACGT	5 cut(s)	614, 786, 821, 926, 1023
HpyF10VI	GCNNNNNNNGC	1 cut(s)	418
HpySE526I	ACGT	5 cut(s)	614, 786, 821, 926, 1023
Hsp92II	CATG	8 cut(s)	589, 761, 1035, 1082, 1407, 1469, 1478, 1644
HspAI	GCGC	4 cut(s)	266, 362, 583, 1504
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Ksp22I	TGATCA	2 cut(s)	289, 916
Kzo9I	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
LmnI	GCTCC	1 cut(s)	159
Lsp1109I	GCAGC	4 cut(s)	399, 631, 754, 1142
LweI	GCATC	4 cut(s)	241, 430, 1039, 1299
MaeII	ACGT	5 cut(s)	614, 786, 821, 926, 1023
MaeIII	GTNAC	4 cut(s)	509, 1027, 1243, 1337
MalI	GATC	5 cut(s)	291, 918, 1005, 1447, 1490
MboI	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
MboII	GAAGA	6 cut(s)	269, 290, 445, 1078, 1214, 1285
MfeI	CAATTG	3 cut(s)	457, 666, 1036
MhlI	GDGCHC	1 cut(s)	164
MmeI	TCCRAC	3 cut(s)	40, 76, 483
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	31
MseI	TTAA	7 cut(s)	68, 305, 783, 837, 1095, 1152, 1263
MspCI	CTTAAG	1 cut(s)	1262
MspI	CCGG	7 cut(s)	37, 157, 284, 341, 440, 498, 748
MspR9I	CCNGG	5 cut(s)	37, 38, 284, 499, 1293
MunI	CAATTG	3 cut(s)	457, 666, 1036
MvaI	CCWGG	1 cut(s)	1293
MvnI	CGCG	2 cut(s)	268, 899
MwoI	GCNNNNNNNGC	1 cut(s)	418
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	4 cut(s)	37, 38, 284, 499
NdeII	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	8 cut(s)	589, 761, 1035, 1082, 1407, 1469, 1478, 1644
NlaIV	GGNNCC	3 cut(s)	161, 1434, 1472
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	1027, 1337
NsbI	TGCGCA	1 cut(s)	584
NspI	RCATGY	2 cut(s)	761, 1035
NspV	TTCGAA	1 cut(s)	328
PaeR7I	CTCGAG	1 cut(s)	701
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	31
PfeI	GAWTC	3 cut(s)	520, 1072, 1568
PkrI	GCNGC	5 cut(s)	414, 643, 646, 769, 1132
Ppu21I	YACGTR	1 cut(s)	927
PpuMI	RGGWCCY	1 cut(s)	1433
PshAI	GACNNNNGTC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	305
PsiI	TTATAA	2 cut(s)	681, 941
Psp5II	RGGWCCY	1 cut(s)	1433
Psp6I	CCWGG	1 cut(s)	1291
PspGI	CCWGG	1 cut(s)	1291
PspN4I	GGNNCC	3 cut(s)	161, 1434, 1472
PspPI	GGNCC	2 cut(s)	1433, 1551
PspPPI	RGGWCCY	1 cut(s)	1433
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	254
RsaI	GTAC	3 cut(s)	852, 973, 1654
RsaNI	GTAC	3 cut(s)	851, 972, 1653
SaqAI	TTAA	7 cut(s)	68, 305, 783, 837, 1095, 1152, 1263
SatI	GCNGC	5 cut(s)	413, 642, 645, 768, 1131
Sau3AI	GATC	5 cut(s)	289, 916, 1003, 1445, 1488
Sau96I	GGNCC	2 cut(s)	1433, 1551
ScrFI	CCNGG	5 cut(s)	37, 38, 284, 499, 1293
SduI	GDGCHC	1 cut(s)	164
SfaNI	GCATC	4 cut(s)	241, 430, 1039, 1299
SfcI	CTRYAG	1 cut(s)	768
Sfr274I	CTCGAG	1 cut(s)	701
SfuI	TTCGAA	1 cut(s)	328
SinI	GGWCC	2 cut(s)	1433, 1551
SlaI	CTCGAG	1 cut(s)	701
SmaI	CCCGGG	1 cut(s)	38
SmlI	CTYRAG	4 cut(s)	320, 701, 980, 1262
SmoI	CTYRAG	4 cut(s)	320, 701, 980, 1262
SnaBI	TACGTA	1 cut(s)	927
SsiI	CCGC	5 cut(s)	268, 415, 544, 641, 1619
SspI	AATATT	1 cut(s)	1560
StyD4I	CCNGG	5 cut(s)	35, 36, 282, 497, 1291
StyI	CCWWGG	1 cut(s)	1547
TaaI	ACNGT	2 cut(s)	21, 1634
TaiI	ACGT	5 cut(s)	617, 789, 824, 929, 1026
TaqI	TCGA	6 cut(s)	328, 366, 573, 702, 1047, 1271
TaqII	GACCGA	5 cut(s)	384, 414, 686, 1455, 1568
TatI	WGTACW	1 cut(s)	1652
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	520, 1072, 1568
Tru1I	TTAA	7 cut(s)	68, 305, 783, 837, 1095, 1152, 1263
Tru9I	TTAA	7 cut(s)	68, 305, 783, 837, 1095, 1152, 1263
TscAI	CASTG	3 cut(s)	104, 954, 1328
TseFI	GTSAC	2 cut(s)	1027, 1337
TseI	GCWGC	4 cut(s)	412, 644, 767, 1130
Tsp45I	GTSAC	2 cut(s)	1027, 1337
TspDTI	ATGAA	5 cut(s)	570, 621, 1118, 1454, 1589
TspGWI	ACGGA	2 cut(s)	70, 1502
TspMI	CCCGGG	1 cut(s)	36
TspRI	CASTG	3 cut(s)	104, 954, 1328
Vha464I	CTTAAG	1 cut(s)	1262
VpaK11BI	GGWCC	2 cut(s)	1433, 1551
VspI	ATTAAT	1 cut(s)	305
XapI	RAATTY	8 cut(s)	11, 58, 71, 143, 183, 196, 1287, 1659
XceI	RCATGY	2 cut(s)	761, 1035
XhoI	CTCGAG	1 cut(s)	701
XmaI	CCCGGG	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.