MD03G1251700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
33933939 .. 33934816
878 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1251700.v1.1.491

Sequence Viewer

Length: 333 bp
ATGAACTTCTACTTGATTTTTCTCCTAATCCTTCTAGTCTCCCTCTCCCATGATCTCTTTGCTCACTCAAGTTTGGCCACAAGAAAAGTACAAGATGAGGATACCAAGACTAAGGTAGCAAGAGAATCATCAAATGATTTCCGGGTCAAGCTCTACTATTCATCATCTGTTGAAGGAAATCATCATCATGTCAAAAGGAAAGCGTTGCACGAAGTACATTCAGGAGCAAATCCTGTCAGTAATTCTATAAATTCCTCAGCGATCGAAGAAGTACCTAGTAATCGTATGACTCTTATTTTCTTTATCATATATGTTTCTTTCTTTGCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

8.08

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024338)

Species Orthologous Gene IDs
malus_domestica MD03G1251700.v1.1 MD11G1272900.v1.1
prunus_persica Prupe.4G154600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 1 cut(s) 250
AfaI GTAC 3 cut(s) 90, 216, 273
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 43
AoxI GGCC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 143
BalI TGGCCA 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 256
BciVI GTATCC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 35, 276
BfuI GTATCC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 43
BsnI GGCC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 52, 261
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 269
BssMI GATC 2 cut(s) 52, 261
BstDEI CTNAG 2 cut(s) 111, 256
BstKTI GATC 2 cut(s) 55, 264
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 2 cut(s) 52, 261
BstMCI CGRYCG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 89, 215, 272
CviAII CATG 2 cut(s) 50, 188
CviJI RGCY 2 cut(s) 77, 151
CviKI_1 RGCY 2 cut(s) 77, 151
CviQI GTAC 3 cut(s) 89, 215, 272
DdeI CTNAG 2 cut(s) 111, 256
DpnI GATC 2 cut(s) 54, 263
DpnII GATC 2 cut(s) 52, 261
EaeI YGGCCR 1 cut(s) 75
FaeI CATG 2 cut(s) 53, 191
FaiI YATR 8 cut(s) 51, 189, 248, 287, 308, 310, 312, 328
FatI CATG 2 cut(s) 49, 187
FspBI CTAG 2 cut(s) 35, 276
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 142
Hin1II CATG 2 cut(s) 53, 191
HinfI GANTC 2 cut(s) 125, 289
HpaII CCGG 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 222
HpyAV CCTTC 2 cut(s) 41, 167
HpyCH4V TGCA 2 cut(s) 208, 326
HpyF3I CTNAG 2 cut(s) 111, 256
Hsp92II CATG 2 cut(s) 53, 191
Kzo9I GATC 2 cut(s) 52, 261
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 3 cut(s) 155, 207, 246
MaeI CTAG 2 cut(s) 35, 276
MalI GATC 2 cut(s) 54, 263
MboI GATC 2 cut(s) 52, 261
MboII GAAGA 1 cut(s) 278
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 2 cut(s) 241, 250
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 3 cut(s) 53, 91, 265
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 143
NciI CCSGG 1 cut(s) 143
NdeII GATC 2 cut(s) 52, 261
NlaIII CATG 2 cut(s) 53, 191
PfeI GAWTC 1 cut(s) 125
Ple19I CGATCG 1 cut(s) 264
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PvuI CGATCG 1 cut(s) 264
RsaI GTAC 3 cut(s) 90, 216, 273
RsaNI GTAC 3 cut(s) 89, 215, 272
RseI CAYNNNNRTG 1 cut(s) 186
Sau3AI GATC 2 cut(s) 52, 261
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 143
SetI ASST 3 cut(s) 117, 153, 277
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 241, 250
SspMI CTAG 2 cut(s) 35, 276
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 241, 250
TatI WGTACW 2 cut(s) 88, 214
TfiI GAWTC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 17, 150
XapI RAATTY 1 cut(s) 250
XspI CTAG 2 cut(s) 35, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.