Prupe.4G154600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
8854412 .. 8855894
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G154600.1

Sequence Viewer

Length: 279 bp
ATGAACCTTTACTCAATTTTTCTTTTAATCCTAGTCTGCCATGATCTCTTACCTTACTCAAGTTTGGCCACAAGAAAACTACAAGATGTGGAGGAGACAAATAAAGTGAGAAAATCATCAGCAAATGATGATTTCCAGGACAAGCAGTCATTGTTTGAAGAAGCCACCGATCATGTCCAAAGGAAAGTGTTGCACGAAGTACATTCAGGACCAAATCCCATCGGTAATTCTATTCCTCATCAGCACAAGGCCAACACATCATTACGAAAAACTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.49

Weight (kDa)

7.01

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024338)

Species Orthologous Gene IDs
malus_domestica MD03G1251700.v1.1 MD11G1272900.v1.1
prunus_persica Prupe.4G154600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 66
AfaI GTAC 1 cut(s) 201
AgsI TTSAA 1 cut(s) 158
AhdI GACNNNNNGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 89
AoxI GGCC 2 cut(s) 66, 249
AspS9I GGNCC 1 cut(s) 209
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 68
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 32, 277
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 209
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 107
BshFI GGCC 2 cut(s) 68, 251
BsmAI GTCTC 1 cut(s) 89
BsnI GGCC 2 cut(s) 68, 251
Bsp143I GATC 2 cut(s) 43, 169
BspANI GGCC 2 cut(s) 68, 251
BssMI GATC 2 cut(s) 43, 169
Bst2UI CCWGG 1 cut(s) 137
BstKTI GATC 2 cut(s) 46, 172
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 43, 169
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 68, 251
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 200
CviAII CATG 2 cut(s) 41, 173
CviJI RGCY 3 cut(s) 68, 164, 251
CviKI_1 RGCY 3 cut(s) 68, 164, 251
CviQI GTAC 1 cut(s) 200
DpnI GATC 2 cut(s) 45, 171
DpnII GATC 2 cut(s) 43, 169
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 66
Eam1105I GACNNNNNGTC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 2 cut(s) 44, 176
FaiI YATR 2 cut(s) 42, 174
FatI CATG 2 cut(s) 40, 172
FspBI CTAG 2 cut(s) 32, 277
HaeIII GGCC 2 cut(s) 68, 251
Hin1II CATG 2 cut(s) 44, 176
Hpy188III TCNNGA 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 193
Hsp92II CATG 2 cut(s) 44, 176
Kzo9I GATC 2 cut(s) 43, 169
LpnPI CCDG 3 cut(s) 122, 149, 192
MaeI CTAG 2 cut(s) 32, 277
MalI GATC 2 cut(s) 45, 171
MboI GATC 2 cut(s) 43, 169
MboII GAAGA 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 2 cut(s) 15, 226
MluNI TGGCCA 1 cut(s) 68
MnlI CCTC 2 cut(s) 85, 246
Mox20I TGGCCA 1 cut(s) 68
MscI TGGCCA 1 cut(s) 68
MseI TTAA 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NdeII GATC 2 cut(s) 43, 169
NlaIII CATG 2 cut(s) 44, 176
PfoI TCCNGGA 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 1 cut(s) 209
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 26
Sau3AI GATC 2 cut(s) 43, 169
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 137
SetI ASST 2 cut(s) 9, 55
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 2 cut(s) 15, 226
SspMI CTAG 2 cut(s) 32, 277
StyD4I CCNGG 1 cut(s) 135
TasI AATT 2 cut(s) 15, 226
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 209
XspI CTAG 2 cut(s) 32, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.