MD11G1272900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
38975949 .. 38976710
762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1272900.v1.1.491

Sequence Viewer

Length: 258 bp
ATGAACTTGAATTTGTTTTTTCTCCTAATCCTTCTAGTCTCCCATGATCTGTTTGCTCACTCAAGTTTGGTCACAAGAAAACTACAAGATATGGAGACCAAGACTAAGAAATTAAGAGGAGCATCAAATAATTTTCGGGACAAGCAGCTGTACTATTCATCATCTGTCGAAGGAAGTCATCATGTCAAAAGGAAAGCGTTGCATGAAGTACATTCAGGAGCAAATCCTATCAGTAATTCTATCAATTCCTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.58

Weight (kDa)

9.9

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0024338)

Species Orthologous Gene IDs
malus_domestica MD03G1251700.v1.1 MD11G1272900.v1.1
prunus_persica Prupe.4G154600_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 2 cut(s) 152, 210
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 43, 89
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 43, 89
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmsI GCATC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 157
BslFI GGGAC 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 43, 89
BsmFI GGGAC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 89
BssMI GATC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 105, 250
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 43, 89
BstMBI GATC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 151, 209
CviAII CATG 3 cut(s) 44, 182, 203
CviJI RGCY 1 cut(s) 148
CviKI_1 RGCY 1 cut(s) 148
CviQI GTAC 2 cut(s) 151, 209
DdeI CTNAG 2 cut(s) 105, 250
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 89
FaeI CATG 3 cut(s) 47, 185, 206
FaiI YATR 5 cut(s) 45, 92, 183, 204, 256
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 43, 181, 202
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 47, 185, 206
Hpy188III TCNNGA 2 cut(s) 137, 216
HpyAV CCTTC 2 cut(s) 41, 164
HpyCH4V TGCA 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 105, 250
Hsp92II CATG 3 cut(s) 47, 185, 206
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 119, 218
LpnPI CCDG 1 cut(s) 201
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 1 cut(s) 131
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 70
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MluCI AATT 5 cut(s) 10, 110, 130, 235, 244
MnlI CCTC 1 cut(s) 110
MseI TTAA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 148
NdeII GATC 1 cut(s) 46
NlaIII CATG 3 cut(s) 47, 185, 206
NmuCI GTSAC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 147
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 152, 210
RsaNI GTAC 2 cut(s) 151, 209
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 1 cut(s) 46
SetI ASST 1 cut(s) 150
SfaNI GCATC 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 5 cut(s) 10, 110, 130, 235, 244
SspMI CTAG 1 cut(s) 35
TaqI TCGA 1 cut(s) 168
TasI AATT 5 cut(s) 10, 110, 130, 235, 244
TatI WGTACW 2 cut(s) 150, 208
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 17, 147, 219
XapI RAATTY 1 cut(s) 10
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.