Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0022400

Physical Location & Seq

Genomic Coordinates Reverse (-)

1470410 .. 1471249

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1013000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTTCTTGCTGCTTCGAACAGTGGCCACACCACAGTTGAACTGGTTGAACCGCCAGAAGGTGCACAAGTTGGCGAGAGAGTTACATTTCCCGGGTTTGTAGTTGAGCCTGATGAGATTTTGAACCCGAAGAAGAGGGTGTGGGAGACCTTGCAGGTGGATCTGCACACGAACACTGAACTAGTGGCGTGCTACAAAGATATTCCGCTCACAACATCAGCCGGTGTTTGCACCGTGTTCTCTATTGCCGGTGGGTCAATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

89

Amino Acids

9.41

Weight (kDa)

4.77

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022400)

Species	Orthologous Gene IDs
malus_domestica	MD04G1013000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0332211
rosa_rugosa	Rorug07G0176300
rosa_samantha	Rh1DG128100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	208
AciI	CCGC	2 cut(s)	53, 206
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	41, 50, 124
AhlI	ACTAGT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	1 cut(s)	140
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	25
ApaLI	GTGCAC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	11
AsuC2I	CCSGG	2 cut(s)	93, 94
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	67
BcnI	CCSGG	2 cut(s)	93, 94
BcoDI	GTCTC	1 cut(s)	140
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	93, 94
BmeT110I	CYCGRG	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	93, 94
Bpu14I	TTCGAA	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	93, 94
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	2 cut(s)	221, 248
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	93, 222, 249
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	53, 206
BspANI	GGCC	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	208
BsrFI	RCCGGY	2 cut(s)	221, 248
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	2 cut(s)	221, 248
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	23, 37, 235
Bst6I	CTCTTC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	190
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	91, 92
BstSLI	GKGCMC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	28, 174
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	190
Cfr10I	RCCGGY	2 cut(s)	221, 248
Cfr9I	CCCGGG	1 cut(s)	92
CviJI	RGCY	3 cut(s)	27, 109, 221
CviKI_1	RGCY	3 cut(s)	27, 109, 221
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	12
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	3 cut(s)	93, 222, 249
HpaII	CCGG	3 cut(s)	93, 222, 249
Hpy166II	GTNNAC	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	3 cut(s)	23, 37, 235
HpyCH4V	TGCA	4 cut(s)	65, 154, 166, 231
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	7 cut(s)	29, 69, 106, 123, 140, 235, 262
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	208
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	142, 145
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	27
MnlI	CCTC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	27
MspI	CCGG	3 cut(s)	93, 222, 249
MspR9I	CCNGG	2 cut(s)	93, 94
NciI	CCSGG	2 cut(s)	93, 94
NdeII	GATC	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	93, 94
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	3 cut(s)	64, 152, 159
SfuI	TTCGAA	1 cut(s)	17
SmaI	CCCGGG	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	53, 206
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	91, 92
TaaI	ACNGT	3 cut(s)	23, 37, 235
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	28, 181
TseI	GCWGC	1 cut(s)	11
TspMI	CCCGGG	1 cut(s)	92
TspRI	CASTG	2 cut(s)	28, 181
VneI	GTGCAC	1 cut(s)	63
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.