Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0022400

Physical Location & Seq

Genomic Coordinates Reverse (-)

26735945 .. 26736292

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG128100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTTCCGTAGAATTGGCCAGCACTGAAAATCATGTGCCTGCCAGAAACCAACTCTTTACAGCGACTATTGCAAAAACTTCTCTGTACCCAAATTCTTCCTCAAGCAGTCAGTGCATAAGTTTATCTGTTTGCAGAGTTTCAGACAATCTTAGACGTCCATGCATGAATAGATTTATACACTGTTTTATTCCCGATTGGGGCATCTTTCAGGTTGAGTTGGTTGATCCACCAATATCTGCTCAAGTTGGGGAGGGAATTACATTTCCGGGGTTCGAAGGTGAGCCTGATGATGTGTTGAACCTTGAGCAGGTCTGGGAGACCCTGCAGGGTAGAATTGCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g tRNA_bind

Protein Analysis

115

Amino Acids

12.73

Weight (kDa)

4.66

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022400)

Species	Orthologous Gene IDs
malus_domestica	MD04G1013000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0332211
rosa_rugosa	Rorug07G0176300
rosa_samantha	Rh1DG128100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	157
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	200, 310
AgsI	TTSAA	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	276
BalI	TGGCCA	1 cut(s)	20
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	276
BpuEI	CTTGAG	3 cut(s)	88, 228, 326
BpuMI	CCSGG	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 310
BseDI	CCNNGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	2 cut(s)	200, 310
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	200, 310
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	20
Bso31I	GGTCTC	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	1 cut(s)	20
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	185, 345
BstACI	GRCGYC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	22, 42
BstDEI	CTNAG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 114
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	24, 119, 181
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	22, 42
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	35, 162, 166
CviJI	RGCY	3 cut(s)	5, 20, 286
CviKI_1	RGCY	3 cut(s)	5, 20, 286
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	167
FaeI	CATG	3 cut(s)	38, 165, 169
FaiI	YATR	5 cut(s)	36, 119, 163, 167, 179
FatI	CATG	3 cut(s)	34, 161, 165
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	269
Hin1I	GRCGYC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	38, 165, 169
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	185, 345
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	6 cut(s)	74, 117, 135, 165, 328, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 114
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	38, 165, 169
Kzo9I	GATC	1 cut(s)	226
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	157
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	20
MluCI	AATT	4 cut(s)	14, 94, 258, 336
MluNI	TGGCCA	1 cut(s)	20
MnlI	CCTC	2 cut(s)	112, 247
Mox20I	TGGCCA	1 cut(s)	20
Mph1103I	ATGCAT	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	20
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	71, 114
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	38, 165, 169
NsiI	ATGCAT	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	276
PstI	CTGCAG	1 cut(s)	330
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	226
SbfI	CCTGCAGG	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	270
SdaI	CCTGCAGG	1 cut(s)	330
SetI	ASST	5 cut(s)	160, 216, 283, 306, 315
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	326
SfuI	TTCGAA	1 cut(s)	276
SmlI	CTYRAG	3 cut(s)	103, 243, 305
SmoI	CTYRAG	3 cut(s)	103, 243, 305
Sse8387I	CCTGCAGG	1 cut(s)	330
Sse9I	AATT	4 cut(s)	14, 94, 258, 336
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	2 cut(s)	185, 345
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	276
TasI	AATT	4 cut(s)	14, 94, 258, 336
TscAI	CASTG	3 cut(s)	31, 119, 188
TspDTI	ATGAA	1 cut(s)	182
TspRI	CASTG	3 cut(s)	31, 119, 188
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	94
ZraI	GACGTC	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.