Rorug07G0176300

Belongs to the class-I aminoacyl-tRNA synthetase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0022400
Physical Location & Seq
Forward (+)
14604958 .. 14605227
270 bp
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UTR
Exon/CDS
Intron
Rorug07G0176300.1

Sequence Viewer

Length: 270 bp
ATGTTTTGGAATGACGACGTGATGGTGAAGACGAGCACGACTTCTGCTCATCATATAGACCTGGAGATTGGAGGAGGGCCTGGTGATCCTCAATGGCGTCTGATAGGCTTTTATGGCTATGCACGAACTGCGGAGAGAGATCGTTCGTGGTTACTGTTGCGGGAGTTAAGTGACATGAGTTCTCTTCCATGGGTGGTGATAGGGGATTTTAATGAAATCCTCAACAACGGTGAAAGATTGATGGATCAGTCAGGTCGGAGAGTCAAATGA

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

5.2

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 27 - 81 4.9e-06 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022400)

Species Orthologous Gene IDs
malus_domestica MD04G1013000.v1.1
rosa_chinensis RchiOBHm_Chr1g0332211
rosa_rugosa Rorug07G0176300
rosa_samantha Rh1DG128100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 131, 160
AclWI GGATC 2 cut(s) 80, 252
AcyI GRCGYC 1 cut(s) 97
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 60, 79
Alw21I GWGCWC 1 cut(s) 38
AlwI GGATC 2 cut(s) 80, 252
AoxI GGCC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 4 cut(s) 37, 95, 208, 242
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 2 cut(s) 16, 235
BciT130I CCWGG 2 cut(s) 62, 81
Bme1390I CCNGG 2 cut(s) 62, 81
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 2 cut(s) 62, 81
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 188
BseBI CCWGG 2 cut(s) 62, 81
BseDI CCNNGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 87
BshFI GGCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 38
BsnI GGCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 85, 139, 244
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 2 cut(s) 131, 160
BspANI GGCC 1 cut(s) 79
BspPI GGATC 2 cut(s) 80, 252
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 85, 139, 244
BssNI GRCGYC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 2 cut(s) 62, 81
Bst4CI ACNGT 2 cut(s) 156, 230
Bst6I CTCTTC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 188
BstKTI GATC 3 cut(s) 88, 142, 247
BstMBI GATC 3 cut(s) 85, 139, 244
BstMWI GCNNNNNNNGC 2 cut(s) 114, 128
BstNI CCWGG 2 cut(s) 62, 81
BstSCI CCNGG 2 cut(s) 60, 79
BstV2I GAAGAC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 77
CseI GACGC 1 cut(s) 86
CviAII CATG 2 cut(s) 175, 189
CviJI RGCY 3 cut(s) 79, 108, 117
CviKI_1 RGCY 3 cut(s) 79, 108, 117
DpnI GATC 3 cut(s) 87, 141, 246
DpnII GATC 3 cut(s) 85, 139, 244
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 60, 79
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 178, 192
FaiI YATR 6 cut(s) 54, 56, 114, 120, 176, 190
FatI CATG 2 cut(s) 174, 188
FauI CCCGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 79
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 2 cut(s) 178, 192
HinfI GANTC 1 cut(s) 261
HphI GGTGA 4 cut(s) 37, 95, 208, 242
Hpy188I TCNGA 2 cut(s) 102, 258
Hpy99I CGWCG 1 cut(s) 20
HpyCH4III ACNGT 2 cut(s) 156, 230
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 128
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 2 cut(s) 178, 192
Kzo9I GATC 3 cut(s) 85, 139, 244
LpnPI CCDG 5 cut(s) 47, 66, 74, 93, 237
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 150, 170
MalI GATC 3 cut(s) 87, 141, 246
MboI GATC 3 cut(s) 85, 139, 244
MboII GAAGA 2 cut(s) 40, 176
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 4 cut(s) 65, 68, 99, 230
MseI TTAA 2 cut(s) 167, 210
MspR9I CCNGG 2 cut(s) 62, 81
MvaI CCWGG 2 cut(s) 62, 81
MwoI GCNNNNNNNGC 2 cut(s) 114, 128
NcoI CCATGG 1 cut(s) 188
NdeII GATC 3 cut(s) 85, 139, 244
NlaIII CATG 2 cut(s) 178, 192
NmuCI GTSAC 1 cut(s) 170
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 2 cut(s) 60, 79
PspGI CCWGG 2 cut(s) 60, 79
PspPI GGNCC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 167, 210
Sau3AI GATC 3 cut(s) 85, 139, 244
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 2 cut(s) 62, 81
SduI GDGCHC 1 cut(s) 38
SetI ASST 3 cut(s) 21, 63, 256
SsiI CCGC 2 cut(s) 131, 160
StyD4I CCNGG 2 cut(s) 60, 79
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 2 cut(s) 156, 230
TaiI ACGT 1 cut(s) 21
Tru1I TTAA 2 cut(s) 167, 210
Tru9I TTAA 2 cut(s) 167, 210
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.