MD04G1062500.v1.1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0019179
Physical Location & Seq
Reverse (-)
8215031 .. 8216039
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1062500.v1.1.491

Sequence Viewer

Length: 174 bp
ATGCCTTTCAGGAGATTGATAGAGGTGGAACCGCCGAGCCCGCTGAGATACGTAATCGGAGCGGCGATCATGATGATCGGAGTAGTCTTACCCGTCGGTTACATGATGTTCCGTAACAAGCGCGTCCCCACTTCCTCTTCGTACTCCAAACAGACGAGCAAAGTTTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.46

Weight (kDa)

10.61

Isoelectric Point (pI)

92.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16695 AT4G16695 AT4G16695
malus_domestica MD04G1062500.v1.1 MD06G1056600.v1.1
prunus_persica Prupe.5G067000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203631
rosa_wichuraiana Rw7G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 32, 41, 62
AfaI GTAC 1 cut(s) 143
AspLEI GCGC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 41
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 52
BseMII CTCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 66, 75
BspACI CCGC 3 cut(s) 32, 41, 62
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 62
BssMI GATC 2 cut(s) 66, 75
Bst6I CTCTTC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 2 cut(s) 69, 78
BstMBI GATC 2 cut(s) 66, 75
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstSNI TACGTA 1 cut(s) 52
BstUI CGCG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 41
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 123
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 70, 103
CviJI RGCY 1 cut(s) 39
CviKI_1 RGCY 1 cut(s) 39
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 68, 77
DpnII GATC 2 cut(s) 66, 75
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco105I TACGTA 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 2 cut(s) 73, 106
FaiI YATR 3 cut(s) 71, 104, 172
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 69, 102
FauI CCCGC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 63
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 123
Hin1II CATG 2 cut(s) 73, 106
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 59, 80
Hpy188III TCNNGA 2 cut(s) 10, 70
Hpy99I CGWCG 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 73, 106
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 2 cut(s) 66, 75
LmnI GCTCC 1 cut(s) 59
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 98, 113
MalI GATC 2 cut(s) 68, 77
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 66, 75
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 41
MnlI CCTC 2 cut(s) 16, 145
MspA1I CMGCKG 1 cut(s) 43
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 2 cut(s) 66, 75
NlaIII CATG 2 cut(s) 73, 106
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 30
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 66, 75
SduI GDGCHC 1 cut(s) 41
SetI ASST 2 cut(s) 27, 54
SgeI CNNG 9 cut(s) 22, 48, 52, 82, 104, 115, 130, 134, 168
SnaBI TACGTA 1 cut(s) 52
SsiI CCGC 3 cut(s) 32, 41, 62
TaiI ACGT 1 cut(s) 54
TauI GCSGC 1 cut(s) 65
TspGWI ACGGA 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.