Prupe.5G067000_v2.0.a1

isoform X1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
8142786 .. 8144529
1744 bp
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UTR
Exon/CDS
Intron
Prupe.5G067000.1

Sequence Viewer

Length: 174 bp
ATGCCTTTCAGGAGATTGATAGAGGTGGAACCGCCGAGCCCACTGAGATACGTGATCGGAGCGGCCATCATGATGATCGGAGTAGTCTTACCCGTCGGTTACATGATGTTCCGTAACAAGCGTGTTCCTTCTTCCTCTTCCTACTCCAAACAGACGAACAAAGTTTTAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.47

Weight (kDa)

10.61

Isoelectric Point (pI)

100.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16695 AT4G16695 AT4G16695
malus_domestica MD04G1062500.v1.1 MD06G1056600.v1.1
prunus_persica Prupe.5G067000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0203631
rosa_wichuraiana Rw7G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AciI CCGC 2 cut(s) 32, 62
AcoI YGGCCR 1 cut(s) 63
AoxI GGCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 41
BccI CCATC 1 cut(s) 74
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 52
BseMII CTCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 65
BsnI GGCC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 54, 75
BspACI CCGC 2 cut(s) 32, 62
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 62
BssMI GATC 2 cut(s) 54, 75
Bst6I CTCTTC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 44
BstKTI GATC 2 cut(s) 57, 78
BstMBI GATC 2 cut(s) 54, 75
BsuRI GGCC 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 41
CciI TCATGA 1 cut(s) 69
CviAII CATG 2 cut(s) 70, 103
CviJI RGCY 2 cut(s) 39, 65
CviKI_1 RGCY 2 cut(s) 39, 65
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 56, 77
DpnII GATC 2 cut(s) 54, 75
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 2 cut(s) 73, 106
FaiI YATR 3 cut(s) 71, 104, 172
FatI CATG 2 cut(s) 69, 102
Fnu4HI GCNGC 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 2 cut(s) 73, 106
Hpy188I TCNGA 2 cut(s) 59, 80
Hpy188III TCNNGA 2 cut(s) 10, 70
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 51
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 73, 106
Kzo9I GATC 2 cut(s) 54, 75
LmnI GCTCC 1 cut(s) 59
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 98, 113
MalI GATC 2 cut(s) 56, 77
MbiI CCGCTC 1 cut(s) 62
MboI GATC 2 cut(s) 54, 75
MboII GAAGA 2 cut(s) 123, 129
MhlI GDGCHC 1 cut(s) 41
MnlI CCTC 2 cut(s) 16, 145
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 71
NdeII GATC 2 cut(s) 54, 75
NlaIII CATG 2 cut(s) 73, 106
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 54, 75
SduI GDGCHC 1 cut(s) 41
SetI ASST 2 cut(s) 27, 54
SgeI CNNG 8 cut(s) 22, 48, 64, 82, 104, 115, 130, 134
SmiMI CAYNNNNRTG 1 cut(s) 71
SsiI CCGC 2 cut(s) 32, 62
TaiI ACGT 1 cut(s) 54
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.